RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 COX6CP09669 75 aa4.09□□□□□ -1.75
CD44-211ENST00000442151 FABP2P12104 132 aa4.09□□□□□ -1.75
CD44-211ENST00000442151 SPATA45Q537H7 98 aa4.09□□□□□ -1.75
CD44-211ENST00000442151 H3BUT2 72 aa4.09□□□□□ -1.76
CD44-211ENST00000442151 DNAL4O96015 105 aa4.09□□□□□ -1.76
CD44-211ENST00000442151 CEND1Q8N111 149 aa4.08□□□□□ -1.76
CD44-211ENST00000442151 KRTAP5-1Q6L8H4 278 aa4.07□□□□□ -1.76
CD44-211ENST00000442151 A0A087WSZ3 146 aa4.07□□□□□ -1.76
CD44-211ENST00000442151 TMEM256-PLSCR3K7ERE1 68 aa4.07□□□□□ -1.76
CD44-211ENST00000442151 ANKRD29Q8N6D5 301 aa4.07□□□□□ -1.76
CD44-211ENST00000442151 C20orf166-AS1Q96NR2 134 aa4.07□□□□□ -1.76
CD44-211ENST00000442151 PSMB2P49721 201 aa4.06□□□□□ -1.76
CD44-211ENST00000442151 LINC00313P59037 77 aa4.06□□□□□ -1.76
CD44-211ENST00000442151 ORMDL1Q9P0S3 153 aa4.06□□□□□ -1.76
CD44-211ENST00000442151 A8MUU9 505 aa4.05□□□□□ -1.76
CD44-211ENST00000442151 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
CD44-211ENST00000442151 TRBV7-4A0A0J9YYF1 115 aa4.05□□□□□ -1.76
CD44-211ENST00000442151 KRTAP5-4Q6L8H1 288 aa4.05□□□□□ -1.76
CD44-211ENST00000442151 COL5A1-AS1Q5SY13 56 aa4.04□□□□□ -1.76
CD44-211ENST00000442151 SIGMAR1Q99720 223 aa4.04□□□□□ -1.76
CD44-211ENST00000442151 IGKV4-1P06312 121 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 HSD52Q0P140 79 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 FAM218AQ96MZ4 157 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 RBM12B-AS1Q9P1G2 102 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 TRACP01848 142 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 C2orf91Q6ZV80 131 aa4.02□□□□□ -1.77
CD44-211ENST00000442151 FAM236DA0A1B0GTK5 79 aa4.01□□□□□ -1.77
CD44-211ENST00000442151 A0A1B0GV90 55 aa4.01□□□□□ -1.77
CD44-211ENST00000442151 FAM236CP0DP71 79 aa4.01□□□□□ -1.77
CD44-211ENST00000442151 MTURNQ8N3F0 131 aa4.01□□□□□ -1.77
CD44-211ENST00000442151 A0A1W2PNM2 257 aa4□□□□□ -1.77
CD44-211ENST00000442151 C8orf87E5RJ46 101 aa4□□□□□ -1.77
CD44-211ENST00000442151 DSCR10P59022 87 aa4□□□□□ -1.77
CD44-211ENST00000442151 SCGB1C2P0DMR2 95 aa4□□□□□ -1.77
CD44-211ENST00000442151 DSCR8Q96T75 97 aa4□□□□□ -1.77
CD44-211ENST00000442151 J3KT08 172 aa3.99□□□□□ -1.77
CD44-211ENST00000442151 CCKP06307 115 aa3.99□□□□□ -1.77
CD44-211ENST00000442151 FXYD2P54710 66 aa3.99□□□□□ -1.77
CD44-211ENST00000442151 RBM3P98179 157 aaKnown RBP3.98□□□□□ -1.77
CD44-211ENST00000442151 BATFQ16520 125 aa3.98□□□□□ -1.77
CD44-211ENST00000442151 NDUFB1O75438 58 aa3.98□□□□□ -1.77
CD44-211ENST00000442151 LINC00472Q9H8W2 130 aa3.97□□□□□ -1.77
CD44-211ENST00000442151 A0A1B0GW54 56 aa3.96□□□□□ -1.78
CD44-211ENST00000442151 SEC61GP60059 68 aa3.96□□□□□ -1.78
CD44-211ENST00000442151 KRTAP4-4Q9BYR3 166 aa3.96□□□□□ -1.78
CD44-211ENST00000442151 IGHV6-1A0A0B4J1U7 121 aa3.95□□□□□ -1.78
CD44-211ENST00000442151 C9JAW5 83 aa3.95□□□□□ -1.78
CD44-211ENST00000442151 VPS25Q9BRG1 176 aa3.95□□□□□ -1.78
CD44-211ENST00000442151 A0A1B0GVX0 72 aa3.94□□□□□ -1.78
CD44-211ENST00000442151 PDE6GP18545 87 aa3.94□□□□□ -1.78
CD44-211ENST00000442151 JMJD7-PLA2G4BH0Y9G9 81 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 TAX1BP3O14907 124 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 BAALC-AS2P0C853 105 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 A0A1B0GV72 72 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 KRTAP16-1A8MUX0 517 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 LINC00846Q9NV44 126 aa3.93□□□□□ -1.78
CD44-211ENST00000442151 K7ERJ3 54 aa3.92□□□□□ -1.78
CD44-211ENST00000442151 DEFB116Q30KQ4 102 aa3.92□□□□□ -1.78
CD44-211ENST00000442151 LYRM7Q5U5X0 104 aa3.92□□□□□ -1.78
CD44-211ENST00000442151 ATXN8Q156A1 80 aa3.91□□□□□ -1.78
CD44-211ENST00000442151 GTF2H5Q6ZYL4 71 aa3.91□□□□□ -1.78
CD44-211ENST00000442151 FLGP20930 4061 aaPredicted RBP3.91□□□□□ -1.78
CD44-211ENST00000442151 LCE1AQ5T7P2 110 aa3.9□□□□□ -1.79
CD44-211ENST00000442151 MPLKIPQ8TAP9 179 aa3.9□□□□□ -1.79
CD44-211ENST00000442151 ZCCHC13Q8WW36 166 aaKnown RBP3.9□□□□□ -1.79
CD44-211ENST00000442151 Q6ZQT0 140 aa3.89□□□□□ -1.79
CD44-211ENST00000442151 HRES1P13985 223 aa3.88□□□□□ -1.79
CD44-211ENST00000442151 NOTCH2NLQ7Z3S9 236 aa3.88□□□□□ -1.79
CD44-211ENST00000442151 A0A1W2PPM0 123 aa3.88□□□□□ -1.79
CD44-211ENST00000442151 K7EP34 96 aa3.88□□□□□ -1.79
CD44-211ENST00000442151 LOC110117498A0A087WWA1 95 aa3.87□□□□□ -1.79
CD44-211ENST00000442151 A8MWP4 228 aa3.87□□□□□ -1.79
CD44-211ENST00000442151 SPINK7P58062 85 aa3.87□□□□□ -1.79
CD44-211ENST00000442151 Q8N9P0 234 aaPredicted RBP3.86□□□□□ -1.79
CD44-211ENST00000442151 KRTAP10-10P60014 251 aa3.86□□□□□ -1.79
CD44-211ENST00000442151 NREPQ16612 68 aa3.86□□□□□ -1.79
CD44-211ENST00000442151 C8orf17Q9NRJ1 99 aa3.86□□□□□ -1.79
CD44-211ENST00000442151 SPCS1Q9Y6A9 102 aa3.86□□□□□ -1.79
CD44-211ENST00000442151 Q6ZVQ6 151 aa3.84□□□□□ -1.79
CD44-211ENST00000442151 WFDC13Q8IUB5 93 aa3.84□□□□□ -1.79
CD44-211ENST00000442151 USH2AO75445 5202 aa3.84□□□□□ -1.8
CD44-211ENST00000442151 K7ERU9 68 aa3.84□□□□□ -1.8
CD44-211ENST00000442151 F8W1H4 67 aa3.83□□□□□ -1.8
CD44-211ENST00000442151 MT2AP02795 61 aa3.83□□□□□ -1.8
CD44-211ENST00000442151 IGKV3D-7A0A0C4DH55 119 aa3.82□□□□□ -1.8
CD44-211ENST00000442151 PRR15Q8IV56 129 aa3.82□□□□□ -1.8
CD44-211ENST00000442151 TMEM254Q8TBM7 123 aa3.82□□□□□ -1.8
CD44-211ENST00000442151 MRPL34Q9BQ48 92 aaKnown RBP3.81□□□□□ -1.8
CD44-211ENST00000442151 SSPOA2VEC9 5147 aa3.81□□□□□ -1.8
CD44-211ENST00000442151 J3QR89 54 aa3.8□□□□□ -1.8
CD44-211ENST00000442151 NAA38Q9BRA0 125 aaKnown RBP3.8□□□□□ -1.8
CD44-211ENST00000442151 C14orf132Q9NPU4 83 aa3.79□□□□□ -1.8
CD44-211ENST00000442151 NDUFS5O43920 106 aa3.79□□□□□ -1.8
CD44-211ENST00000442151 hDV103S1A0JD37 113 aa3.78□□□□□ -1.8
CD44-211ENST00000442151 H3BT86 120 aa3.78□□□□□ -1.8
CD44-211ENST00000442151 MT1FP04733 61 aa3.78□□□□□ -1.8
CD44-211ENST00000442151 H1FX-AS1Q4G0G2 97 aa3.78□□□□□ -1.8
CD44-211ENST00000442151 BPY2O14599 106 aa3.77□□□□□ -1.81
CD44-211ENST00000442151 PRO0461Q9UI25 63 aa3.77□□□□□ -1.81
CD44-211ENST00000442151 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms