RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 KRTAP1-3Q8IUG1 177 aa4.64□□□□□ -1.67
CPSF6-202ENST00000435070 TRRAPQ9Y4A5 3859 aa4.64□□□□□ -1.67
CPSF6-202ENST00000435070 HRES1P13985 223 aa4.64□□□□□ -1.67
CPSF6-202ENST00000435070 PSORS1C2Q9UIG4 136 aa4.64□□□□□ -1.67
CPSF6-202ENST00000435070 SMR3BP02814 79 aaPredicted RBP4.63□□□□□ -1.67
CPSF6-202ENST00000435070 FLG2Q5D862 2391 aaPredicted RBP4.63□□□□□ -1.67
CPSF6-202ENST00000435070 NSD1Q96L73 2696 aaPredicted RBP4.62□□□□□ -1.67
CPSF6-202ENST00000435070 MMP24-AS1A0A0U1RRL7 71 aa4.62□□□□□ -1.67
CPSF6-202ENST00000435070 IGLV5-37A0A075B6J1 123 aa4.62□□□□□ -1.67
CPSF6-202ENST00000435070 LINC00472Q9H8W2 130 aa4.62□□□□□ -1.67
CPSF6-202ENST00000435070 CSAG1Q6PB30 78 aa4.61□□□□□ -1.67
CPSF6-202ENST00000435070 NBEAL1Q6ZS30 2694 aa4.61□□□□□ -1.67
CPSF6-202ENST00000435070 HECTD1Q9ULT8 2610 aa4.61□□□□□ -1.67
CPSF6-202ENST00000435070 SEC61BP60468 96 aaKnown RBP4.6□□□□□ -1.67
CPSF6-202ENST00000435070 CSMD3Q7Z407 3707 aa4.6□□□□□ -1.67
CPSF6-202ENST00000435070 MRPL34Q9BQ48 92 aaKnown RBP4.6□□□□□ -1.67
CPSF6-202ENST00000435070 LINC00304Q8N9R0 145 aa4.6□□□□□ -1.67
CPSF6-202ENST00000435070 DNAH10OSP0CZ25 163 aa4.6□□□□□ -1.67
CPSF6-202ENST00000435070 H3BNG1 76 aa4.59□□□□□ -1.67
CPSF6-202ENST00000435070 K7EIL1 84 aa4.59□□□□□ -1.67
CPSF6-202ENST00000435070 PLAC8Q9NZF1 115 aa4.58□□□□□ -1.68
CPSF6-202ENST00000435070 KRTAP10-11P60412 298 aa4.58□□□□□ -1.68
CPSF6-202ENST00000435070 KRTAP11-1Q8IUC1 163 aa4.57□□□□□ -1.68
CPSF6-202ENST00000435070 KRTAP1-1Q07627 177 aa4.56□□□□□ -1.68
CPSF6-202ENST00000435070 TENM2Q9NT68 2774 aa4.56□□□□□ -1.68
CPSF6-202ENST00000435070 STAB1Q9NY15 2570 aa4.55□□□□□ -1.68
CPSF6-202ENST00000435070 A0A087X002 238 aa4.54□□□□□ -1.68
CPSF6-202ENST00000435070 NOTCH2NLQ7Z3S9 236 aa4.54□□□□□ -1.68
CPSF6-202ENST00000435070 H1FX-AS1Q4G0G2 97 aa4.54□□□□□ -1.68
CPSF6-202ENST00000435070 ANAPC11Q9NYG5 84 aa4.54□□□□□ -1.68
CPSF6-202ENST00000435070 ANK3Q12955 4377 aaKnown RBP4.52□□□□□ -1.69
CPSF6-202ENST00000435070 A0A1B0GU33 70 aa4.52□□□□□ -1.69
CPSF6-202ENST00000435070 M0R2T5 61 aa4.51□□□□□ -1.69
CPSF6-202ENST00000435070 Q6ZR54 194 aa4.51□□□□□ -1.69
CPSF6-202ENST00000435070 Q5W150 140 aa4.5□□□□□ -1.69
CPSF6-202ENST00000435070 A0A087WTM6 91 aa4.49□□□□□ -1.69
CPSF6-202ENST00000435070 Q8N1X5 172 aa4.49□□□□□ -1.69
CPSF6-202ENST00000435070 A0A1B0GVX0 72 aa4.49□□□□□ -1.69
CPSF6-202ENST00000435070 ZNF861PO60384 105 aa4.48□□□□□ -1.69
CPSF6-202ENST00000435070 ROMO1P60602 79 aa4.48□□□□□ -1.69
CPSF6-202ENST00000435070 STAB2Q8WWQ8 2551 aa4.47□□□□□ -1.69
CPSF6-202ENST00000435070 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
CPSF6-202ENST00000435070 TENM4Q6N022 2769 aa4.46□□□□□ -1.69
CPSF6-202ENST00000435070 MGAM2Q2M2H8 2515 aa4.46□□□□□ -1.7
CPSF6-202ENST00000435070 SPRR1BP22528 89 aa4.46□□□□□ -1.7
CPSF6-202ENST00000435070 ASB16-AS1Q495Z4 193 aa4.45□□□□□ -1.7
CPSF6-202ENST00000435070 Q6ZSA8 131 aa4.45□□□□□ -1.7
CPSF6-202ENST00000435070 KRTAP1-5Q9BYS1 174 aa4.44□□□□□ -1.7
CPSF6-202ENST00000435070 SPATA8Q6RVD6 105 aa4.44□□□□□ -1.7
CPSF6-202ENST00000435070 PANO1I0J062 215 aa4.43□□□□□ -1.7
CPSF6-202ENST00000435070 KMT2BQ9UMN6 2715 aaPredicted RBP4.41□□□□□ -1.7
CPSF6-202ENST00000435070 DNAH10Q8IVF4 4471 aa4.41□□□□□ -1.7
CPSF6-202ENST00000435070 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.39□□□□□ -1.71
CPSF6-202ENST00000435070 DMBT1Q9UGM3 2413 aaPredicted RBP4.38□□□□□ -1.71
CPSF6-202ENST00000435070 TGP01266 2768 aa4.37□□□□□ -1.71
CPSF6-202ENST00000435070 C20orf166-AS1Q96NR2 134 aa4.36□□□□□ -1.71
CPSF6-202ENST00000435070 KRTAP13-3Q3SY46 172 aa4.35□□□□□ -1.71
CPSF6-202ENST00000435070 LYSTQ99698 3801 aa4.35□□□□□ -1.71
CPSF6-202ENST00000435070 ANK2Q01484 3957 aa4.34□□□□□ -1.71
CPSF6-202ENST00000435070 KRTAP13-1Q8IUC0 172 aa4.34□□□□□ -1.71
CPSF6-202ENST00000435070 S4R3F8 94 aa4.34□□□□□ -1.72
CPSF6-202ENST00000435070 RPL37P61927 97 aaKnown RBP4.33□□□□□ -1.72
CPSF6-202ENST00000435070 R4GN34 69 aa4.31□□□□□ -1.72
CPSF6-202ENST00000435070 MEGF8Q7Z7M0 2845 aa4.29□□□□□ -1.72
CPSF6-202ENST00000435070 KRTAP25-1Q3LHN0 102 aa4.27□□□□□ -1.73
CPSF6-202ENST00000435070 FBN3Q75N90 2809 aa4.27□□□□□ -1.73
CPSF6-202ENST00000435070 ALMS1Q8TCU4 4167 aa4.27□□□□□ -1.73
CPSF6-202ENST00000435070 Q5VSD8 79 aa4.25□□□□□ -1.73
CPSF6-202ENST00000435070 DNAH9Q9NYC9 4486 aa4.25□□□□□ -1.73
CPSF6-202ENST00000435070 DNAH1Q9P2D7 4330 aa4.24□□□□□ -1.73
CPSF6-202ENST00000435070 A8MUU9 505 aa4.23□□□□□ -1.73
CPSF6-202ENST00000435070 H0YAA0 97 aa4.23□□□□□ -1.73
CPSF6-202ENST00000435070 P0C880 135 aa4.2□□□□□ -1.74
CPSF6-202ENST00000435070 FRAS1Q86XX4 4008 aa4.2□□□□□ -1.74
CPSF6-202ENST00000435070 M0QZ58 72 aa4.2□□□□□ -1.74
CPSF6-202ENST00000435070 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
CPSF6-202ENST00000435070 DNAH8Q96JB1 4490 aa4.17□□□□□ -1.74
CPSF6-202ENST00000435070 HUWE1Q7Z6Z7 4374 aaKnown RBP4.16□□□□□ -1.74
CPSF6-202ENST00000435070 Q6ZRN7 208 aaPredicted RBP4.16□□□□□ -1.74
CPSF6-202ENST00000435070 PP632Q6XCG6 107 aa4.14□□□□□ -1.75
CPSF6-202ENST00000435070 DNAH7Q8WXX0 4024 aa4.13□□□□□ -1.75
CPSF6-202ENST00000435070 DNAH17Q9UFH2 4485 aa4.12□□□□□ -1.75
CPSF6-202ENST00000435070 KRTAP13-2Q52LG2 175 aa4.12□□□□□ -1.75
CPSF6-202ENST00000435070 CMYA5Q8N3K9 4069 aa4.11□□□□□ -1.75
CPSF6-202ENST00000435070 KRTAP10-1P60331 282 aa4.11□□□□□ -1.75
CPSF6-202ENST00000435070 KRTAP10-2P60368 255 aa4.1□□□□□ -1.75
CPSF6-202ENST00000435070 PLECQ15149 4684 aaKnown RBP4.07□□□□□ -1.76
CPSF6-202ENST00000435070 TPRXLQ17RH7 258 aa4.04□□□□□ -1.76
CPSF6-202ENST00000435070 KRTAP3-1Q9BYR8 98 aa4.03□□□□□ -1.76
CPSF6-202ENST00000435070 DNAH3Q8TD57 4116 aa3.98□□□□□ -1.77
CPSF6-202ENST00000435070 HECTD4Q9Y4D8 3996 aa3.98□□□□□ -1.77
CPSF6-202ENST00000435070 TNP1P09430 55 aa3.97□□□□□ -1.77
CPSF6-202ENST00000435070 KMT2AQ03164 3969 aa3.97□□□□□ -1.77
CPSF6-202ENST00000435070 KRTAP1-4P0C5Y4 121 aa3.96□□□□□ -1.77
CPSF6-202ENST00000435070 DNAH11Q96DT5 4516 aa3.96□□□□□ -1.78
CPSF6-202ENST00000435070 DNAH2Q9P225 4427 aa3.95□□□□□ -1.78
CPSF6-202ENST00000435070 KRTAP13-4Q3LI77 160 aa3.95□□□□□ -1.78
CPSF6-202ENST00000435070 VPS13DQ5THJ4 4388 aa3.94□□□□□ -1.78
CPSF6-202ENST00000435070 LRP1BQ9NZR2 4599 aa3.94□□□□□ -1.78
CPSF6-202ENST00000435070 STARD9Q9P2P6 4700 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms