RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 TPRXLQ17RH7 258 aa6.83□□□□□ -1.32
LINC00339-204ENST00000434233 HERC1Q15751 4861 aa6.82□□□□□ -1.32
LINC00339-204ENST00000434233 KRTAP13-3Q3SY46 172 aa6.81□□□□□ -1.32
LINC00339-204ENST00000434233 SIGMAR1Q99720 223 aa6.81□□□□□ -1.32
LINC00339-204ENST00000434233 BPY2O14599 106 aa6.8□□□□□ -1.32
LINC00339-204ENST00000434233 NDUFB1O75438 58 aa6.79□□□□□ -1.32
LINC00339-204ENST00000434233 A8MWP4 228 aa6.78□□□□□ -1.32
LINC00339-204ENST00000434233 DSCR10P59022 87 aa6.77□□□□□ -1.33
LINC00339-204ENST00000434233 A0A1B0GVX0 72 aa6.76□□□□□ -1.33
LINC00339-204ENST00000434233 C9orf92A6NGG3 77 aa6.76□□□□□ -1.33
LINC00339-204ENST00000434233 IGKV3D-7A0A0C4DH55 119 aa6.75□□□□□ -1.33
LINC00339-204ENST00000434233 C8orf87E5RJ46 101 aa6.75□□□□□ -1.33
LINC00339-204ENST00000434233 LINC00313P59037 77 aa6.75□□□□□ -1.33
LINC00339-204ENST00000434233 PRR15Q8IV56 129 aa6.75□□□□□ -1.33
LINC00339-204ENST00000434233 IGHV6-1A0A0B4J1U7 121 aa6.74□□□□□ -1.33
LINC00339-204ENST00000434233 K7ERU9 68 aa6.74□□□□□ -1.33
LINC00339-204ENST00000434233 CXCL6P80162 114 aa6.74□□□□□ -1.33
LINC00339-204ENST00000434233 HMCN2Q8NDA2 5059 aa6.73□□□□□ -1.33
LINC00339-204ENST00000434233 LINC00643Q86TS7 51 aa6.72□□□□□ -1.33
LINC00339-204ENST00000434233 LPAP08519 4548 aa6.71□□□□□ -1.34
LINC00339-204ENST00000434233 K7EQZ3 153 aa6.71□□□□□ -1.34
LINC00339-204ENST00000434233 XP32Q5T750 250 aa6.71□□□□□ -1.34
LINC00339-204ENST00000434233 NOTCH2NLQ7Z3S9 236 aa6.71□□□□□ -1.34
LINC00339-204ENST00000434233 ATP5EP2Q5VTU8 51 aa6.7□□□□□ -1.34
LINC00339-204ENST00000434233 C8orf17Q9NRJ1 99 aa6.7□□□□□ -1.34
LINC00339-204ENST00000434233 KRTAP16-1A8MUX0 517 aa6.67□□□□□ -1.34
LINC00339-204ENST00000434233 Q8N9L7 120 aa6.67□□□□□ -1.34
LINC00339-204ENST00000434233 MMP24-AS1A0A0U1RRL7 71 aa6.66□□□□□ -1.34
LINC00339-204ENST00000434233 A8MUU9 505 aa6.65□□□□□ -1.34
LINC00339-204ENST00000434233 Q75L30 129 aa6.65□□□□□ -1.34
LINC00339-204ENST00000434233 C20orf166-AS1Q96NR2 134 aa6.65□□□□□ -1.34
LINC00339-204ENST00000434233 RPL37P61927 97 aaKnown RBP6.64□□□□□ -1.35
LINC00339-204ENST00000434233 TMEM254Q8TBM7 123 aa6.64□□□□□ -1.35
LINC00339-204ENST00000434233 hDV103S1A0JD37 113 aa6.63□□□□□ -1.35
LINC00339-204ENST00000434233 LRP2P98164 4655 aa6.63□□□□□ -1.35
LINC00339-204ENST00000434233 SEC61BP60468 96 aaKnown RBP6.62□□□□□ -1.35
LINC00339-204ENST00000434233 Q8N9P0 234 aaPredicted RBP6.62□□□□□ -1.35
LINC00339-204ENST00000434233 MRPL34Q9BQ48 92 aaKnown RBP6.62□□□□□ -1.35
LINC00339-204ENST00000434233 CASC2Q6XLA1 102 aa6.61□□□□□ -1.35
LINC00339-204ENST00000434233 HCG22E2RYF7 251 aa6.6□□□□□ -1.35
LINC00339-204ENST00000434233 HIST1H4AP62805 103 aaKnown RBP6.6□□□□□ -1.35
LINC00339-204ENST00000434233 WFDC13Q8IUB5 93 aa6.6□□□□□ -1.35
LINC00339-204ENST00000434233 PCP4P48539 62 aa6.58□□□□□ -1.36
LINC00339-204ENST00000434233 ATP11AUNQ6ZP68 121 aa6.58□□□□□ -1.36
LINC00339-204ENST00000434233 MUC17Q685J3 4493 aa6.58□□□□□ -1.36
LINC00339-204ENST00000434233 PCOTHQ58A44 107 aa6.56□□□□□ -1.36
LINC00339-204ENST00000434233 IMUPQ9GZP8 106 aa6.55□□□□□ -1.36
LINC00339-204ENST00000434233 MT-ATP8P03928 68 aa6.54□□□□□ -1.36
LINC00339-204ENST00000434233 A0A087WVE0 104 aa6.53□□□□□ -1.36
LINC00339-204ENST00000434233 NDUFS5O43920 106 aa6.53□□□□□ -1.36
LINC00339-204ENST00000434233 ZCCHC13Q8WW36 166 aaKnown RBP6.51□□□□□ -1.37
LINC00339-204ENST00000434233 TP53AIP1Q9HCN2 124 aa6.49□□□□□ -1.37
LINC00339-204ENST00000434233 KRTAP4-1Q9BYQ7 146 aa6.46□□□□□ -1.38
LINC00339-204ENST00000434233 Q5W150 140 aa6.44□□□□□ -1.38
LINC00339-204ENST00000434233 UBR4Q5T4S7 5183 aa6.43□□□□□ -1.38
LINC00339-204ENST00000434233 UQCRQO14949 82 aa6.41□□□□□ -1.38
LINC00339-204ENST00000434233 SCGB1A1P11684 91 aa6.41□□□□□ -1.38
LINC00339-204ENST00000434233 OCR1Q9BZK8 76 aa6.39□□□□□ -1.39
LINC00339-204ENST00000434233 SPINK7P58062 85 aa6.38□□□□□ -1.39
LINC00339-204ENST00000434233 FAM236AA0A1B0GUQ0 79 aa6.37□□□□□ -1.39
LINC00339-204ENST00000434233 FAM236BA0A1B0GV22 79 aa6.37□□□□□ -1.39
LINC00339-204ENST00000434233 TRAV22A0A0B4J277 110 aa6.36□□□□□ -1.39
LINC00339-204ENST00000434233 RNF213Q63HN8 5207 aa6.35□□□□□ -1.39
LINC00339-204ENST00000434233 SMIM20Q8N5G0 67 aa6.35□□□□□ -1.39
LINC00339-204ENST00000434233 C5orf47Q569G3 176 aa6.34□□□□□ -1.39
LINC00339-204ENST00000434233 IGKV2-30P06310 120 aa6.33□□□□□ -1.4
LINC00339-204ENST00000434233 C7orf65Q6ZTY9 151 aa6.33□□□□□ -1.4
LINC00339-204ENST00000434233 IGKV2D-30A0A075B6S6 120 aa6.32□□□□□ -1.4
LINC00339-204ENST00000434233 H0Y9P7 68 aa6.32□□□□□ -1.4
LINC00339-204ENST00000434233 ATOX1O00244 68 aa6.32□□□□□ -1.4
LINC00339-204ENST00000434233 HRES1P13985 223 aa6.32□□□□□ -1.4
LINC00339-204ENST00000434233 TRAV7A0A075B6U4 112 aa6.3□□□□□ -1.4
LINC00339-204ENST00000434233 MP68P56378 58 aa6.3□□□□□ -1.4
LINC00339-204ENST00000434233 MUC2Q02817 5179 aa6.3□□□□□ -1.4
LINC00339-204ENST00000434233 A0A0U1RQV1 116 aa6.29□□□□□ -1.4
LINC00339-204ENST00000434233 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
LINC00339-204ENST00000434233 H3BPC8 53 aa6.28□□□□□ -1.4
LINC00339-204ENST00000434233 MPLKIPQ8TAP9 179 aa6.28□□□□□ -1.4
LINC00339-204ENST00000434233 CYP4F30PQ9H0H9 118 aa6.28□□□□□ -1.4
LINC00339-204ENST00000434233 C1orf64Q8NEQ6 169 aa6.27□□□□□ -1.41
LINC00339-204ENST00000434233 RBM12B-AS1Q9P1G2 102 aa6.27□□□□□ -1.41
LINC00339-204ENST00000434233 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
LINC00339-204ENST00000434233 LINC00208Q96KT6 92 aa6.26□□□□□ -1.41
LINC00339-204ENST00000434233 SERP2Q8N6R1 65 aa6.23□□□□□ -1.41
LINC00339-204ENST00000434233 A0A0A0MQY5 61 aa6.22□□□□□ -1.41
LINC00339-204ENST00000434233 COX6B2Q6YFQ2 88 aa6.21□□□□□ -1.42
LINC00339-204ENST00000434233 FAM236DA0A1B0GTK5 79 aa6.2□□□□□ -1.42
LINC00339-204ENST00000434233 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
LINC00339-204ENST00000434233 FAM236CP0DP71 79 aa6.2□□□□□ -1.42
LINC00339-204ENST00000434233 C4orf26Q17RF5 130 aa6.18□□□□□ -1.42
LINC00339-204ENST00000434233 COX7CP15954 63 aa6.16□□□□□ -1.42
LINC00339-204ENST00000434233 KLKP1Q107X0 134 aa6.16□□□□□ -1.42
LINC00339-204ENST00000434233 FAT4Q6V0I7 4981 aa6.13□□□□□ -1.43
LINC00339-204ENST00000434233 C20orf197Q8N268 126 aa6.13□□□□□ -1.43
LINC00339-204ENST00000434233 H1FX-AS1Q4G0G2 97 aa6.12□□□□□ -1.43
LINC00339-204ENST00000434233 ANAPC13Q9BS18 74 aa6.12□□□□□ -1.43
LINC00339-204ENST00000434233 KRTAP3-1Q9BYR8 98 aa6.12□□□□□ -1.43
LINC00339-204ENST00000434233 SNURFQ9Y675 71 aa6.11□□□□□ -1.43
LINC00339-204ENST00000434233 MT1HP80294 61 aa6.1□□□□□ -1.43
LINC00339-204ENST00000434233 A8MUN3 132 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms