RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 LINC00313P59037 77 aa13.15□□□□□ -0.3
VEGFA-209ENST00000425836 IGHV6-1A0A0B4J1U7 121 aa13.14□□□□□ -0.31
VEGFA-209ENST00000425836 NOTCH2NLQ7Z3S9 236 aa13.14□□□□□ -0.31
VEGFA-209ENST00000425836 A0A1B0GVX0 72 aa13.13□□□□□ -0.31
VEGFA-209ENST00000425836 PCOTHQ58A44 107 aa13.13□□□□□ -0.31
VEGFA-209ENST00000425836 Q75L30 129 aa13.1□□□□□ -0.31
VEGFA-209ENST00000425836 A8MWP4 228 aa13.09□□□□□ -0.31
VEGFA-209ENST00000425836 NDUFB1O75438 58 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 C20orf166-AS1Q96NR2 134 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 KRTAP4-1Q9BYQ7 146 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 KRTAP16-1A8MUX0 517 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 C8orf87E5RJ46 101 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 Q6ZVQ6 151 aa13.07□□□□□ -0.32
VEGFA-209ENST00000425836 LINC00846Q9NV44 126 aa13.06□□□□□ -0.32
VEGFA-209ENST00000425836 IGKV3D-7A0A0C4DH55 119 aa13.05□□□□□ -0.32
VEGFA-209ENST00000425836 A8MUU9 505 aa13.05□□□□□ -0.32
VEGFA-209ENST00000425836 BPY2O14599 106 aa13.01□□□□□ -0.33
VEGFA-209ENST00000425836 PRR15Q8IV56 129 aa13□□□□□ -0.33
VEGFA-209ENST00000425836 ATP11AUNQ6ZP68 121 aa12.98□□□□□ -0.33
VEGFA-209ENST00000425836 UBL5Q9BZL1 73 aa12.98□□□□□ -0.33
VEGFA-209ENST00000425836 C8orf17Q9NRJ1 99 aa12.97□□□□□ -0.33
VEGFA-209ENST00000425836 K7EQZ3 153 aa12.94□□□□□ -0.34
VEGFA-209ENST00000425836 MMP24-AS1A0A0U1RRL7 71 aa12.87□□□□□ -0.35
VEGFA-209ENST00000425836 Q8N9L7 120 aa12.86□□□□□ -0.35
VEGFA-209ENST00000425836 A0A0U1RQV1 116 aa12.86□□□□□ -0.35
VEGFA-209ENST00000425836 J3QR89 54 aa12.85□□□□□ -0.35
VEGFA-209ENST00000425836 ACYP1P07311 99 aa12.84□□□□□ -0.35
VEGFA-209ENST00000425836 Q8N9P0 234 aaPredicted RBP12.84□□□□□ -0.35
VEGFA-209ENST00000425836 FAM240AA0A1B0GVK7 77 aa12.81□□□□□ -0.36
VEGFA-209ENST00000425836 K7ERU9 68 aa12.81□□□□□ -0.36
VEGFA-209ENST00000425836 FAT4Q6V0I7 4981 aa12.8□□□□□ -0.36
VEGFA-209ENST00000425836 hDV103S1A0JD37 113 aa12.79□□□□□ -0.36
VEGFA-209ENST00000425836 TMEM254Q8TBM7 123 aa12.79□□□□□ -0.36
VEGFA-209ENST00000425836 MRPL34Q9BQ48 92 aaKnown RBP12.77□□□□□ -0.36
VEGFA-209ENST00000425836 CXCL6P80162 114 aa12.75□□□□□ -0.37
VEGFA-209ENST00000425836 ZCCHC13Q8WW36 166 aaKnown RBP12.72□□□□□ -0.37
VEGFA-209ENST00000425836 WFDC13Q8IUB5 93 aa12.71□□□□□ -0.37
VEGFA-209ENST00000425836 CASC2Q6XLA1 102 aa12.7□□□□□ -0.38
VEGFA-209ENST00000425836 KRTAP19-2Q3LHN2 52 aa12.69□□□□□ -0.38
VEGFA-209ENST00000425836 HCG22E2RYF7 251 aa12.65□□□□□ -0.38
VEGFA-209ENST00000425836 NDUFS5O43920 106 aa12.64□□□□□ -0.39
VEGFA-209ENST00000425836 LCE2CQ5TA81 110 aa12.63□□□□□ -0.39
VEGFA-209ENST00000425836 ATP5EP2Q5VTU8 51 aa12.6□□□□□ -0.39
VEGFA-209ENST00000425836 LCE2AQ5TA79 106 aaPredicted RBP12.57□□□□□ -0.4
VEGFA-209ENST00000425836 LINC00643Q86TS7 51 aa12.57□□□□□ -0.4
VEGFA-209ENST00000425836 SPINK7P58062 85 aa12.52□□□□□ -0.41
VEGFA-209ENST00000425836 Q5W150 140 aa12.51□□□□□ -0.41
VEGFA-209ENST00000425836 COX6B2Q6YFQ2 88 aa12.5□□□□□ -0.41
VEGFA-209ENST00000425836 HRES1P13985 223 aa12.49□□□□□ -0.41
VEGFA-209ENST00000425836 HIST1H4AP62805 103 aaKnown RBP12.48□□□□□ -0.41
VEGFA-209ENST00000425836 MPLKIPQ8TAP9 179 aa12.44□□□□□ -0.42
VEGFA-209ENST00000425836 MT1HP80294 61 aa12.43□□□□□ -0.42
VEGFA-209ENST00000425836 MT-ATP8P03928 68 aa12.39□□□□□ -0.43
VEGFA-209ENST00000425836 TP53AIP1Q9HCN2 124 aa12.39□□□□□ -0.43
VEGFA-209ENST00000425836 A0A087WVE0 104 aa12.38□□□□□ -0.43
VEGFA-209ENST00000425836 RBM12B-AS1Q9P1G2 102 aa12.37□□□□□ -0.43
VEGFA-209ENST00000425836 PCP4P48539 62 aa12.35□□□□□ -0.43
VEGFA-209ENST00000425836 IGKV2D-30A0A075B6S6 120 aa12.34□□□□□ -0.43
VEGFA-209ENST00000425836 IGKV2-30P06310 120 aa12.34□□□□□ -0.43
VEGFA-209ENST00000425836 FAM236DA0A1B0GTK5 79 aa12.31□□□□□ -0.44
VEGFA-209ENST00000425836 FAM236CP0DP71 79 aa12.31□□□□□ -0.44
VEGFA-209ENST00000425836 C7orf65Q6ZTY9 151 aa12.3□□□□□ -0.44
VEGFA-209ENST00000425836 FLGP20930 4061 aaPredicted RBP12.28□□□□□ -0.44
VEGFA-209ENST00000425836 IMUPQ9GZP8 106 aa12.28□□□□□ -0.44
VEGFA-209ENST00000425836 M0R2T5 61 aa12.21□□□□□ -0.46
VEGFA-209ENST00000425836 UQCRQO14949 82 aa12.18□□□□□ -0.46
VEGFA-209ENST00000425836 TRAV22A0A0B4J277 110 aa12.17□□□□□ -0.46
VEGFA-209ENST00000425836 KRTAP10-6P60371 365 aaPredicted RBP12.1□□□□□ -0.47
VEGFA-209ENST00000425836 OCR1Q9BZK8 76 aa12.09□□□□□ -0.47
VEGFA-209ENST00000425836 C4orf26Q17RF5 130 aa12.08□□□□□ -0.48
VEGFA-209ENST00000425836 H0Y9P7 68 aa12.07□□□□□ -0.48
VEGFA-209ENST00000425836 LORP23490 312 aaPredicted RBP12.07□□□□□ -0.48
VEGFA-209ENST00000425836 CYP4F30PQ9H0H9 118 aa12.06□□□□□ -0.48
VEGFA-209ENST00000425836 LOC101927531A0A1B0GV80 90 aa12.05□□□□□ -0.48
VEGFA-209ENST00000425836 FAM236AA0A1B0GUQ0 79 aa12.04□□□□□ -0.48
VEGFA-209ENST00000425836 FAM236BA0A1B0GV22 79 aa12.04□□□□□ -0.48
VEGFA-209ENST00000425836 ATOX1O00244 68 aa12.03□□□□□ -0.48
VEGFA-209ENST00000425836 SCGB1A1P11684 91 aa12.02□□□□□ -0.49
VEGFA-209ENST00000425836 H1FX-AS1Q4G0G2 97 aa12.01□□□□□ -0.49
VEGFA-209ENST00000425836 C1orf64Q8NEQ6 169 aa11.95□□□□□ -0.5
VEGFA-209ENST00000425836 MP68P56378 58 aa11.93□□□□□ -0.5
VEGFA-209ENST00000425836 C5orf47Q569G3 176 aa11.93□□□□□ -0.5
VEGFA-209ENST00000425836 KRTAP3-1Q9BYR8 98 aa11.93□□□□□ -0.5
VEGFA-209ENST00000425836 LINC00208Q96KT6 92 aa11.92□□□□□ -0.5
VEGFA-209ENST00000425836 KRTAP9-8Q9BYQ0 159 aa11.85□□□□□ -0.51
VEGFA-209ENST00000425836 SMIM20Q8N5G0 67 aa11.83□□□□□ -0.52
VEGFA-209ENST00000425836 H3BPC8 53 aa11.82□□□□□ -0.52
VEGFA-209ENST00000425836 SVIPQ8NHG7 77 aa11.82□□□□□ -0.52
VEGFA-209ENST00000425836 KLKP1Q107X0 134 aa11.8□□□□□ -0.52
VEGFA-209ENST00000425836 TRAV7A0A075B6U4 112 aa11.78□□□□□ -0.52
VEGFA-209ENST00000425836 KRTAP9-2Q9BYQ4 174 aa11.78□□□□□ -0.52
VEGFA-209ENST00000425836 LCE2DQ5TA82 110 aaPredicted RBP11.75□□□□□ -0.53
VEGFA-209ENST00000425836 SERP2Q8N6R1 65 aa11.74□□□□□ -0.53
VEGFA-209ENST00000425836 MT2AP02795 61 aa11.72□□□□□ -0.53
VEGFA-209ENST00000425836 ANAPC13Q9BS18 74 aa11.72□□□□□ -0.53
VEGFA-209ENST00000425836 S4R3F8 94 aa11.71□□□□□ -0.54
VEGFA-209ENST00000425836 LCA10Q71F78 164 aa11.66□□□□□ -0.54
VEGFA-209ENST00000425836 MT1FP04733 61 aa11.64□□□□□ -0.55
VEGFA-209ENST00000425836 COX7CP15954 63 aa11.64□□□□□ -0.55
VEGFA-209ENST00000425836 A8MUN3 132 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms