RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 KLKP1Q107X0 134 aa15.19■□□□□ 0.02
LDB1-202ENST00000425280 SNURFQ9Y675 71 aa15.19■□□□□ 0.02
LDB1-202ENST00000425280 TMEM254Q8TBM7 123 aa15.18■□□□□ 0.02
LDB1-202ENST00000425280 NOTCH2NLQ7Z3S9 236 aa15.17■□□□□ 0.02
LDB1-202ENST00000425280 LINC00304Q8N9R0 145 aa15.17■□□□□ 0.02
LDB1-202ENST00000425280 HSPG2P98160 4391 aa15.16■□□□□ 0.02
LDB1-202ENST00000425280 PKHD1L1Q86WI1 4243 aa15.16■□□□□ 0.02
LDB1-202ENST00000425280 Q5VSD8 79 aa15.12■□□□□ 0.01
LDB1-202ENST00000425280 A0A0U1RQV1 116 aa15.12■□□□□ 0.01
LDB1-202ENST00000425280 SPAG11AQ6PDA7 123 aa15.1■□□□□ 0.01
LDB1-202ENST00000425280 RYR1P21817 5038 aa15.09■□□□□ 0.01
LDB1-202ENST00000425280 C5orf47Q569G3 176 aa15.08■□□□□ 0.01
LDB1-202ENST00000425280 RPS29P62273 56 aaKnown RBP15.08■□□□□ 0
LDB1-202ENST00000425280 MRPL34Q9BQ48 92 aaKnown RBP15.05■□□□□ 0
LDB1-202ENST00000425280 H7BZZ5 65 aa15.05■□□□□ -0
LDB1-202ENST00000425280 C8orf87E5RJ46 101 aa15.04■□□□□ -0
LDB1-202ENST00000425280 TMEM258P61165 79 aa15.02■□□□□ -0
LDB1-202ENST00000425280 KRTAP17-1Q9BYP8 105 aa15.02■□□□□ -0
LDB1-202ENST00000425280 NDUFC1O43677 76 aa14.98□□□□□ -0.01
LDB1-202ENST00000425280 LINC00313P59037 77 aa14.97□□□□□ -0.01
LDB1-202ENST00000425280 NDUFS5O43920 106 aa14.97□□□□□ -0.01
LDB1-202ENST00000425280 ZCCHC13Q8WW36 166 aaKnown RBP14.97□□□□□ -0.01
LDB1-202ENST00000425280 TP53AIP1Q9HCN2 124 aa14.97□□□□□ -0.01
LDB1-202ENST00000425280 H0Y9P7 68 aa14.96□□□□□ -0.02
LDB1-202ENST00000425280 MP68P56378 58 aa14.96□□□□□ -0.02
LDB1-202ENST00000425280 SVIPQ8NHG7 77 aa14.95□□□□□ -0.02
LDB1-202ENST00000425280 EPPK1P58107 5090 aaKnown RBP14.93□□□□□ -0.02
LDB1-202ENST00000425280 KIAA1109Q2LD37 5005 aa14.91□□□□□ -0.02
LDB1-202ENST00000425280 TRAV22A0A0B4J277 110 aa14.91□□□□□ -0.02
LDB1-202ENST00000425280 LINC00208Q96KT6 92 aa14.89□□□□□ -0.03
LDB1-202ENST00000425280 H3BPC8 53 aa14.86□□□□□ -0.03
LDB1-202ENST00000425280 Q8N1X5 172 aa14.86□□□□□ -0.03
LDB1-202ENST00000425280 KRTAP10-8P60410 259 aa14.85□□□□□ -0.03
LDB1-202ENST00000425280 KRTAP16-1A8MUX0 517 aa14.85□□□□□ -0.03
LDB1-202ENST00000425280 FAM236DA0A1B0GTK5 79 aa14.84□□□□□ -0.03
LDB1-202ENST00000425280 FAM236CP0DP71 79 aa14.84□□□□□ -0.03
LDB1-202ENST00000425280 LRP1Q07954 4544 aaKnown RBP14.82□□□□□ -0.04
LDB1-202ENST00000425280 Q8N9P0 234 aaPredicted RBP14.81□□□□□ -0.04
LDB1-202ENST00000425280 C1orf64Q8NEQ6 169 aa14.81□□□□□ -0.04
LDB1-202ENST00000425280 TNXBP22105 4242 aa14.8□□□□□ -0.04
LDB1-202ENST00000425280 RPS28P62857 69 aaKnown RBP14.75□□□□□ -0.05
LDB1-202ENST00000425280 Q5W150 140 aa14.75□□□□□ -0.05
LDB1-202ENST00000425280 FLG2Q5D862 2391 aaPredicted RBP14.74□□□□□ -0.05
LDB1-202ENST00000425280 KRTAP13-3Q3SY46 172 aa14.73□□□□□ -0.05
LDB1-202ENST00000425280 RETNLBQ9BQ08 111 aa14.73□□□□□ -0.05
LDB1-202ENST00000425280 FAT3Q8TDW7 4589 aa14.71□□□□□ -0.05
LDB1-202ENST00000425280 ATP5EP56381 51 aaPredicted RBP14.7□□□□□ -0.06
LDB1-202ENST00000425280 MT1HL1P0DM35 61 aa14.61□□□□□ -0.07
LDB1-202ENST00000425280 C9orf92A6NGG3 77 aa14.59□□□□□ -0.07
LDB1-202ENST00000425280 LOC101927531A0A1B0GV80 90 aa14.57□□□□□ -0.08
LDB1-202ENST00000425280 SERP1Q9Y6X1 66 aa14.57□□□□□ -0.08
LDB1-202ENST00000425280 PCOTHQ58A44 107 aa14.56□□□□□ -0.08
LDB1-202ENST00000425280 OXTP01178 125 aa14.55□□□□□ -0.08
LDB1-202ENST00000425280 MYCBP2O75592 4640 aa14.54□□□□□ -0.08
LDB1-202ENST00000425280 PRR4Q16378 134 aa14.53□□□□□ -0.08
LDB1-202ENST00000425280 SPANXA2-OT1Q8N9U9 137 aa14.53□□□□□ -0.08
LDB1-202ENST00000425280 KRTAP4-5Q9BYR2 181 aa14.52□□□□□ -0.09
LDB1-202ENST00000425280 CYP4F30PQ9H0H9 118 aa14.5□□□□□ -0.09
LDB1-202ENST00000425280 DMBT1Q9UGM3 2413 aaPredicted RBP14.48□□□□□ -0.09
LDB1-202ENST00000425280 C20orf166-AS1Q96NR2 134 aa14.46□□□□□ -0.09
LDB1-202ENST00000425280 A8MUU9 505 aa14.45□□□□□ -0.1
LDB1-202ENST00000425280 IGKV2-30P06310 120 aa14.44□□□□□ -0.1
LDB1-202ENST00000425280 FP248Q71RG6 208 aaPredicted RBP14.44□□□□□ -0.1
LDB1-202ENST00000425280 IGLV7-46A0A075B6I9 117 aa14.43□□□□□ -0.1
LDB1-202ENST00000425280 IGKV2D-30A0A075B6S6 120 aa14.33□□□□□ -0.12
LDB1-202ENST00000425280 Q75L30 129 aa14.29□□□□□ -0.12
LDB1-202ENST00000425280 HRES1P13985 223 aa14.28□□□□□ -0.12
LDB1-202ENST00000425280 C4orf26Q17RF5 130 aa14.27□□□□□ -0.13
LDB1-202ENST00000425280 BIRC6Q9NR09 4857 aa14.26□□□□□ -0.13
LDB1-202ENST00000425280 SMIM26A0A096LP01 95 aa14.21□□□□□ -0.13
LDB1-202ENST00000425280 C7orf65Q6ZTY9 151 aa14.21□□□□□ -0.13
LDB1-202ENST00000425280 ABCA13Q86UQ4 5058 aa14.18□□□□□ -0.14
LDB1-202ENST00000425280 HERC2O95714 4834 aa14.16□□□□□ -0.14
LDB1-202ENST00000425280 XP32Q5T750 250 aa14.16□□□□□ -0.14
LDB1-202ENST00000425280 COA5Q86WW8 74 aa14.14□□□□□ -0.15
LDB1-202ENST00000425280 RPL37P61927 97 aaKnown RBP14.11□□□□□ -0.15
LDB1-202ENST00000425280 DMAC1Q96GE9 116 aa14.1□□□□□ -0.15
LDB1-202ENST00000425280 ATP11AUNQ6ZP68 121 aa14.06□□□□□ -0.16
LDB1-202ENST00000425280 SPINK7P58062 85 aa14.04□□□□□ -0.16
LDB1-202ENST00000425280 ACYP2P14621 99 aa14.03□□□□□ -0.16
LDB1-202ENST00000425280 TPRXLQ17RH7 258 aa14.01□□□□□ -0.17
LDB1-202ENST00000425280 J3QL48 77 aa14□□□□□ -0.17
LDB1-202ENST00000425280 MPLKIPQ8TAP9 179 aa13.99□□□□□ -0.17
LDB1-202ENST00000425280 Q1T7F1 81 aa13.89□□□□□ -0.19
LDB1-202ENST00000425280 A8MUN3 132 aa13.83□□□□□ -0.2
LDB1-202ENST00000425280 CHKB-CPT1BH3BT56 60 aa13.82□□□□□ -0.2
LDB1-202ENST00000425280 KRTAP3-1Q9BYR8 98 aa13.78□□□□□ -0.2
LDB1-202ENST00000425280 PRO0628Q9UI54 55 aa13.78□□□□□ -0.2
LDB1-202ENST00000425280 LPAP08519 4548 aa13.77□□□□□ -0.2
LDB1-202ENST00000425280 V9GYY9 64 aa13.77□□□□□ -0.21
LDB1-202ENST00000425280 LRP2P98164 4655 aa13.74□□□□□ -0.21
LDB1-202ENST00000425280 COX6B2Q6YFQ2 88 aa13.71□□□□□ -0.21
LDB1-202ENST00000425280 PSPHP1O15172 72 aa13.67□□□□□ -0.22
LDB1-202ENST00000425280 BRK1Q8WUW1 75 aa13.67□□□□□ -0.22
LDB1-202ENST00000425280 LINC01558Q9Y6Z2 57 aa13.64□□□□□ -0.23
LDB1-202ENST00000425280 PRR15LQ9BU68 103 aa13.6□□□□□ -0.23
LDB1-202ENST00000425280 PCLOQ9Y6V0 5065 aa13.57□□□□□ -0.24
LDB1-202ENST00000425280 Q5VV11 94 aa13.54□□□□□ -0.24
LDB1-202ENST00000425280 SEC61BP60468 96 aaKnown RBP13.5□□□□□ -0.25
LDB1-202ENST00000425280 SPTSSBQ8NFR3 76 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms