RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 MGAM2Q2M2H8 2515 aa6.67□□□□□ -1.34
LIMS1-207ENST00000422797 TGP01266 2768 aa6.66□□□□□ -1.34
LIMS1-207ENST00000422797 IGLV9-49A0A0B4J1Y8 123 aa6.66□□□□□ -1.34
LIMS1-207ENST00000422797 Q6ZRN7 208 aaPredicted RBP6.66□□□□□ -1.34
LIMS1-207ENST00000422797 SEC61GP60059 68 aa6.66□□□□□ -1.34
LIMS1-207ENST00000422797 CD164Q04900 197 aa6.66□□□□□ -1.34
LIMS1-207ENST00000422797 CMYA5Q8N3K9 4069 aa6.64□□□□□ -1.35
LIMS1-207ENST00000422797 WWC2-AS2Q96NR7 200 aa6.64□□□□□ -1.35
LIMS1-207ENST00000422797 IGHV6-1A0A0B4J1U7 121 aa6.63□□□□□ -1.35
LIMS1-207ENST00000422797 A6NED7 52 aa6.63□□□□□ -1.35
LIMS1-207ENST00000422797 NDUFS5O43920 106 aa6.63□□□□□ -1.35
LIMS1-207ENST00000422797 PLAC8Q9NZF1 115 aa6.63□□□□□ -1.35
LIMS1-207ENST00000422797 PCOTHQ58A44 107 aa6.62□□□□□ -1.35
LIMS1-207ENST00000422797 CDC42SE1Q9NRR8 79 aa6.62□□□□□ -1.35
LIMS1-207ENST00000422797 IGLV5-52A0A0A0MRZ9 124 aa6.61□□□□□ -1.35
LIMS1-207ENST00000422797 ZNF861PO60384 105 aa6.61□□□□□ -1.35
LIMS1-207ENST00000422797 HUWE1Q7Z6Z7 4374 aaKnown RBP6.61□□□□□ -1.35
LIMS1-207ENST00000422797 C8orf87E5RJ46 101 aa6.6□□□□□ -1.35
LIMS1-207ENST00000422797 PANO1I0J062 215 aa6.6□□□□□ -1.35
LIMS1-207ENST00000422797 KRTAP9-8Q9BYQ0 159 aa6.6□□□□□ -1.35
LIMS1-207ENST00000422797 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.6□□□□□ -1.35
LIMS1-207ENST00000422797 KTN1-AS1Q86SY8 53 aa6.59□□□□□ -1.35
LIMS1-207ENST00000422797 NOTCH1P46531 2555 aa6.58□□□□□ -1.36
LIMS1-207ENST00000422797 A0A087WTM6 91 aa6.58□□□□□ -1.36
LIMS1-207ENST00000422797 PSORS1C2Q9UIG4 136 aa6.57□□□□□ -1.36
LIMS1-207ENST00000422797 HRES1P13985 223 aa6.56□□□□□ -1.36
LIMS1-207ENST00000422797 KRTAP4-5Q9BYR2 181 aa6.56□□□□□ -1.36
LIMS1-207ENST00000422797 RTL8CO15255 209 aa6.55□□□□□ -1.36
LIMS1-207ENST00000422797 LCA10Q71F78 164 aa6.55□□□□□ -1.36
LIMS1-207ENST00000422797 DYNC2H1Q8NCM8 4307 aaKnown RBP6.55□□□□□ -1.36
LIMS1-207ENST00000422797 SPAG11AQ6PDA7 123 aa6.55□□□□□ -1.36
LIMS1-207ENST00000422797 SSBP3-AS1Q7Z2R9 100 aa6.55□□□□□ -1.36
LIMS1-207ENST00000422797 KRTAP4-11Q9BYQ6 195 aa6.55□□□□□ -1.36
LIMS1-207ENST00000422797 ACYP2P14621 99 aa6.54□□□□□ -1.36
LIMS1-207ENST00000422797 SPTSSBQ8NFR3 76 aa6.53□□□□□ -1.36
LIMS1-207ENST00000422797 KRTAP13-3Q3SY46 172 aa6.52□□□□□ -1.37
LIMS1-207ENST00000422797 A6NN06 94 aa6.51□□□□□ -1.37
LIMS1-207ENST00000422797 FAM229AH3BQW9 127 aa6.5□□□□□ -1.37
LIMS1-207ENST00000422797 PRKDCP78527 4128 aaKnown RBP6.5□□□□□ -1.37
LIMS1-207ENST00000422797 IGLV7-43P04211 117 aa6.5□□□□□ -1.37
LIMS1-207ENST00000422797 DMAC1Q96GE9 116 aa6.49□□□□□ -1.37
LIMS1-207ENST00000422797 A8MU10 97 aa6.48□□□□□ -1.37
LIMS1-207ENST00000422797 DNAH10Q8IVF4 4471 aa6.47□□□□□ -1.37
LIMS1-207ENST00000422797 C7orf65Q6ZTY9 151 aa6.47□□□□□ -1.37
LIMS1-207ENST00000422797 A0A087X002 238 aa6.46□□□□□ -1.37
LIMS1-207ENST00000422797 NOTCH2NLQ7Z3S9 236 aa6.46□□□□□ -1.37
LIMS1-207ENST00000422797 Q5W150 140 aa6.45□□□□□ -1.38
LIMS1-207ENST00000422797 SPINK6Q6UWN8 80 aa6.45□□□□□ -1.38
LIMS1-207ENST00000422797 DNAH9Q9NYC9 4486 aa6.44□□□□□ -1.38
LIMS1-207ENST00000422797 CIRBP-AS1Q8TBR5 109 aa6.44□□□□□ -1.38
LIMS1-207ENST00000422797 STAB2Q8WWQ8 2551 aa6.44□□□□□ -1.38
LIMS1-207ENST00000422797 KMT2CQ8NEZ4 4911 aaKnown RBP6.43□□□□□ -1.38
LIMS1-207ENST00000422797 SPINK7P58062 85 aa6.43□□□□□ -1.38
LIMS1-207ENST00000422797 LINC00313P59037 77 aa6.43□□□□□ -1.38
LIMS1-207ENST00000422797 PRR26Q8N8Z3 221 aa6.43□□□□□ -1.38
LIMS1-207ENST00000422797 C1orf134Q5TEV5 83 aa6.42□□□□□ -1.38
LIMS1-207ENST00000422797 ANAPC11Q9NYG5 84 aa6.42□□□□□ -1.38
LIMS1-207ENST00000422797 IGKV2-30P06310 120 aa6.4□□□□□ -1.38
LIMS1-207ENST00000422797 RYR3Q15413 4870 aa6.4□□□□□ -1.39
LIMS1-207ENST00000422797 TENM2Q9NT68 2774 aa6.39□□□□□ -1.39
LIMS1-207ENST00000422797 RBM12B-AS1Q9P1G2 102 aa6.39□□□□□ -1.39
LIMS1-207ENST00000422797 LYSTQ99698 3801 aa6.38□□□□□ -1.39
LIMS1-207ENST00000422797 A0A1B0GU69 56 aa6.37□□□□□ -1.39
LIMS1-207ENST00000422797 SRRM2Q9UQ35 2752 aaKnown RBP6.37□□□□□ -1.39
LIMS1-207ENST00000422797 VPS13DQ5THJ4 4388 aa6.35□□□□□ -1.39
LIMS1-207ENST00000422797 PLECQ15149 4684 aaKnown RBP6.34□□□□□ -1.39
LIMS1-207ENST00000422797 SPATA8Q6RVD6 105 aa6.33□□□□□ -1.4
LIMS1-207ENST00000422797 DNAH17Q9UFH2 4485 aa6.32□□□□□ -1.4
LIMS1-207ENST00000422797 KRTAP16-1A8MUX0 517 aa6.31□□□□□ -1.4
LIMS1-207ENST00000422797 UQCR11O14957 56 aa6.3□□□□□ -1.4
LIMS1-207ENST00000422797 KRTAP13-2Q52LG2 175 aa6.29□□□□□ -1.4
LIMS1-207ENST00000422797 DNAH8Q96JB1 4490 aa6.28□□□□□ -1.4
LIMS1-207ENST00000422797 IGKV2D-30A0A075B6S6 120 aa6.28□□□□□ -1.4
LIMS1-207ENST00000422797 Q6ZSA8 131 aa6.28□□□□□ -1.4
LIMS1-207ENST00000422797 PLA2G1BP04054 148 aaKnown RBP6.27□□□□□ -1.41
LIMS1-207ENST00000422797 COL7A1Q02388 2944 aa6.26□□□□□ -1.41
LIMS1-207ENST00000422797 BIRC6Q9NR09 4857 aa6.26□□□□□ -1.41
LIMS1-207ENST00000422797 MIR22HGQ0VDD5 57 aa6.26□□□□□ -1.41
LIMS1-207ENST00000422797 ALMS1Q8TCU4 4167 aa6.26□□□□□ -1.41
LIMS1-207ENST00000422797 HECTD4Q9Y4D8 3996 aa6.26□□□□□ -1.41
LIMS1-207ENST00000422797 SPINK1P00995 79 aa6.25□□□□□ -1.41
LIMS1-207ENST00000422797 RPS29P62273 56 aaKnown RBP6.25□□□□□ -1.41
LIMS1-207ENST00000422797 DNAH7Q8WXX0 4024 aa6.24□□□□□ -1.41
LIMS1-207ENST00000422797 CSMD3Q7Z407 3707 aa6.23□□□□□ -1.41
LIMS1-207ENST00000422797 LY6G6CO95867 125 aa6.22□□□□□ -1.41
LIMS1-207ENST00000422797 RETNLBQ9BQ08 111 aa6.21□□□□□ -1.42
LIMS1-207ENST00000422797 KRTAP1-4P0C5Y4 121 aa6.2□□□□□ -1.42
LIMS1-207ENST00000422797 STARD9Q9P2P6 4700 aa6.19□□□□□ -1.42
LIMS1-207ENST00000422797 KRTAP10-2P60368 255 aa6.19□□□□□ -1.42
LIMS1-207ENST00000422797 TYMSOSQ8TAI1 123 aa6.18□□□□□ -1.42
LIMS1-207ENST00000422797 EPPK1P58107 5090 aaKnown RBP6.17□□□□□ -1.42
LIMS1-207ENST00000422797 DNAH6Q9C0G6 4158 aa6.17□□□□□ -1.42
LIMS1-207ENST00000422797 DNAH2Q9P225 4427 aa6.17□□□□□ -1.42
LIMS1-207ENST00000422797 KRTAP10-1P60331 282 aa6.15□□□□□ -1.42
LIMS1-207ENST00000422797 RYR2Q92736 4967 aa6.13□□□□□ -1.43
LIMS1-207ENST00000422797 LINC00304Q8N9R0 145 aa6.11□□□□□ -1.43
LIMS1-207ENST00000422797 FRAS1Q86XX4 4008 aa6.1□□□□□ -1.43
LIMS1-207ENST00000422797 LINC01554Q52M75 96 aa6.09□□□□□ -1.43
LIMS1-207ENST00000422797 PRAC1Q96KF2 57 aa6.09□□□□□ -1.44
LIMS1-207ENST00000422797 SACSQ9NZJ4 4579 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms