RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 KRTAP4-12Q9BQ66 201 aa6.48□□□□□ -1.37
LINC00339-203ENST00000420503 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
LINC00339-203ENST00000420503 LYRM7Q5U5X0 104 aa6.46□□□□□ -1.38
LINC00339-203ENST00000420503 C20orf166-AS1Q96NR2 134 aa6.46□□□□□ -1.38
LINC00339-203ENST00000420503 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
LINC00339-203ENST00000420503 TRBV20-1A0A075B6N2 111 aa6.45□□□□□ -1.38
LINC00339-203ENST00000420503 A0A1W2PPM0 123 aa6.45□□□□□ -1.38
LINC00339-203ENST00000420503 A8MUU9 505 aa6.45□□□□□ -1.38
LINC00339-203ENST00000420503 BAALC-AS2P0C853 105 aa6.45□□□□□ -1.38
LINC00339-203ENST00000420503 KRTAP4-8A0A0G2JLE6 195 aa6.44□□□□□ -1.38
LINC00339-203ENST00000420503 TEN1Q86WV5 123 aa6.44□□□□□ -1.38
LINC00339-203ENST00000420503 A0A1W2PNM2 257 aa6.43□□□□□ -1.38
LINC00339-203ENST00000420503 TRBV7-4A0A0J9YYF1 115 aa6.42□□□□□ -1.38
LINC00339-203ENST00000420503 A0A1B0GV72 72 aa6.42□□□□□ -1.38
LINC00339-203ENST00000420503 DSCR10P59022 87 aa6.42□□□□□ -1.38
LINC00339-203ENST00000420503 COL5A1-AS1Q5SY13 56 aa6.42□□□□□ -1.38
LINC00339-203ENST00000420503 ANKRD29Q8N6D5 301 aa6.42□□□□□ -1.38
LINC00339-203ENST00000420503 PCP4L1A6NKN8 68 aa6.41□□□□□ -1.38
LINC00339-203ENST00000420503 KRTAP10-10P60014 251 aa6.41□□□□□ -1.38
LINC00339-203ENST00000420503 C9JAW5 83 aa6.39□□□□□ -1.39
LINC00339-203ENST00000420503 RBM3P98179 157 aaKnown RBP6.39□□□□□ -1.39
LINC00339-203ENST00000420503 A0A087WSZ3 146 aa6.38□□□□□ -1.39
LINC00339-203ENST00000420503 FAM236DA0A1B0GTK5 79 aa6.38□□□□□ -1.39
LINC00339-203ENST00000420503 FAM236CP0DP71 79 aa6.38□□□□□ -1.39
LINC00339-203ENST00000420503 SS18L2Q9UHA2 77 aa6.38□□□□□ -1.39
LINC00339-203ENST00000420503 CCKP06307 115 aa6.37□□□□□ -1.39
LINC00339-203ENST00000420503 HRES1P13985 223 aa6.37□□□□□ -1.39
LINC00339-203ENST00000420503 JMJD7-PLA2G4BH0Y9G9 81 aa6.36□□□□□ -1.39
LINC00339-203ENST00000420503 MPLKIPQ8TAP9 179 aa6.36□□□□□ -1.39
LINC00339-203ENST00000420503 DSCR8Q96T75 97 aa6.36□□□□□ -1.39
LINC00339-203ENST00000420503 SPCS1Q9Y6A9 102 aa6.36□□□□□ -1.39
LINC00339-203ENST00000420503 H3BT86 120 aa6.35□□□□□ -1.39
LINC00339-203ENST00000420503 NOTCH2NLQ7Z3S9 236 aa6.35□□□□□ -1.39
LINC00339-203ENST00000420503 MTURNQ8N3F0 131 aa6.34□□□□□ -1.39
LINC00339-203ENST00000420503 LOC110117498A0A087WWA1 95 aa6.33□□□□□ -1.4
LINC00339-203ENST00000420503 Q6ZQT0 140 aa6.33□□□□□ -1.4
LINC00339-203ENST00000420503 K7EP34 96 aa6.31□□□□□ -1.4
LINC00339-203ENST00000420503 KRTAP19-6Q3LI70 58 aa6.31□□□□□ -1.4
LINC00339-203ENST00000420503 SIGMAR1Q99720 223 aa6.31□□□□□ -1.4
LINC00339-203ENST00000420503 VPS25Q9BRG1 176 aa6.31□□□□□ -1.4
LINC00339-203ENST00000420503 C14orf132Q9NPU4 83 aa6.31□□□□□ -1.4
LINC00339-203ENST00000420503 LINC00472Q9H8W2 130 aa6.3□□□□□ -1.4
LINC00339-203ENST00000420503 PRO0461Q9UI25 63 aa6.3□□□□□ -1.4
LINC00339-203ENST00000420503 PDE6GP18545 87 aa6.29□□□□□ -1.4
LINC00339-203ENST00000420503 A0A1B0GW54 56 aa6.27□□□□□ -1.41
LINC00339-203ENST00000420503 C21orf62-AS1Q17RA5 79 aa6.27□□□□□ -1.41
LINC00339-203ENST00000420503 DEFB116Q30KQ4 102 aa6.26□□□□□ -1.41
LINC00339-203ENST00000420503 RBM12B-AS1Q9P1G2 102 aa6.26□□□□□ -1.41
LINC00339-203ENST00000420503 LINC00313P59037 77 aa6.25□□□□□ -1.41
LINC00339-203ENST00000420503 IGKV4-1P06312 121 aa6.24□□□□□ -1.41
LINC00339-203ENST00000420503 GTF2H5Q6ZYL4 71 aa6.24□□□□□ -1.41
LINC00339-203ENST00000420503 KRTAP4-7Q9BYR0 210 aa6.22□□□□□ -1.41
LINC00339-203ENST00000420503 F8W1H4 67 aa6.2□□□□□ -1.42
LINC00339-203ENST00000420503 J3KT08 172 aa6.19□□□□□ -1.42
LINC00339-203ENST00000420503 KRTAP6-3Q3LI67 103 aa6.19□□□□□ -1.42
LINC00339-203ENST00000420503 Q8N9P0 234 aaPredicted RBP6.19□□□□□ -1.42
LINC00339-203ENST00000420503 IGHV6-1A0A0B4J1U7 121 aa6.18□□□□□ -1.42
LINC00339-203ENST00000420503 A0A1B0GVX0 72 aa6.17□□□□□ -1.42
LINC00339-203ENST00000420503 NREPQ16612 68 aa6.16□□□□□ -1.42
LINC00339-203ENST00000420503 NEBP20929 6669 aa6.16□□□□□ -1.42
LINC00339-203ENST00000420503 ETDBQ3ZM63 59 aa6.14□□□□□ -1.43
LINC00339-203ENST00000420503 A8MWP4 228 aa6.13□□□□□ -1.43
LINC00339-203ENST00000420503 C8orf87E5RJ46 101 aa6.13□□□□□ -1.43
LINC00339-203ENST00000420503 SPINK7P58062 85 aa6.13□□□□□ -1.43
LINC00339-203ENST00000420503 LCE1DQ5T752 114 aa6.13□□□□□ -1.43
LINC00339-203ENST00000420503 LINC00846Q9NV44 126 aa6.13□□□□□ -1.43
LINC00339-203ENST00000420503 IGKV3D-7A0A0C4DH55 119 aa6.12□□□□□ -1.43
LINC00339-203ENST00000420503 Q6ZVQ6 151 aa6.11□□□□□ -1.43
LINC00339-203ENST00000420503 ZCCHC13Q8WW36 166 aaKnown RBP6.11□□□□□ -1.43
LINC00339-203ENST00000420503 A0A1B0GV90 55 aa6.1□□□□□ -1.43
LINC00339-203ENST00000420503 NDUFB1O75438 58 aa6.1□□□□□ -1.43
LINC00339-203ENST00000420503 PRR15Q8IV56 129 aa6.09□□□□□ -1.43
LINC00339-203ENST00000420503 WFDC13Q8IUB5 93 aa6.08□□□□□ -1.44
LINC00339-203ENST00000420503 C8orf17Q9NRJ1 99 aa6.08□□□□□ -1.44
LINC00339-203ENST00000420503 K7EQZ3 153 aa6.07□□□□□ -1.44
LINC00339-203ENST00000420503 BPY2O14599 106 aa6.07□□□□□ -1.44
LINC00339-203ENST00000420503 MMP24-AS1A0A0U1RRL7 71 aa6.05□□□□□ -1.44
LINC00339-203ENST00000420503 UBL5Q9BZL1 73 aa6.05□□□□□ -1.44
LINC00339-203ENST00000420503 MUC12Q9UKN1 5478 aa6.05□□□□□ -1.44
LINC00339-203ENST00000420503 Q8N9L7 120 aa6.01□□□□□ -1.45
LINC00339-203ENST00000420503 KRTAP4-9Q9BYQ8 210 aa6.01□□□□□ -1.45
LINC00339-203ENST00000420503 TMEM254Q8TBM7 123 aa6□□□□□ -1.45
LINC00339-203ENST00000420503 FAM240AA0A1B0GVK7 77 aa5.99□□□□□ -1.45
LINC00339-203ENST00000420503 hDV103S1A0JD37 113 aa5.99□□□□□ -1.45
LINC00339-203ENST00000420503 MRPL34Q9BQ48 92 aaKnown RBP5.99□□□□□ -1.45
LINC00339-203ENST00000420503 ACYP1P07311 99 aa5.98□□□□□ -1.45
LINC00339-203ENST00000420503 KRTAP4-2Q9BYR5 136 aa5.98□□□□□ -1.45
LINC00339-203ENST00000420503 CXCL6P80162 114 aa5.97□□□□□ -1.45
LINC00339-203ENST00000420503 CASC2Q6XLA1 102 aa5.94□□□□□ -1.46
LINC00339-203ENST00000420503 HCG22E2RYF7 251 aa5.91□□□□□ -1.46
LINC00339-203ENST00000420503 KRTAP20-1Q3LI63 56 aa5.91□□□□□ -1.46
LINC00339-203ENST00000420503 H1FX-AS1Q4G0G2 97 aa5.91□□□□□ -1.46
LINC00339-203ENST00000420503 MT1BP07438 61 aa5.9□□□□□ -1.46
LINC00339-203ENST00000420503 NDUFS5O43920 106 aa5.89□□□□□ -1.47
LINC00339-203ENST00000420503 A6NN06 94 aa5.88□□□□□ -1.47
LINC00339-203ENST00000420503 ATP5EP2Q5VTU8 51 aa5.88□□□□□ -1.47
LINC00339-203ENST00000420503 Q5W150 140 aa5.87□□□□□ -1.47
LINC00339-203ENST00000420503 LINC00643Q86TS7 51 aa5.85□□□□□ -1.47
LINC00339-203ENST00000420503 KMT2DO14686 5537 aa5.83□□□□□ -1.48
LINC00339-203ENST00000420503 J3QR89 54 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms