RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 RYR1P21817 5038 aa3.51□□□□□ -1.85
HMGB3-202ENST00000419110 FAT1Q14517 4588 aa3.51□□□□□ -1.85
HMGB3-202ENST00000419110 J3KT08 172 aa3.5□□□□□ -1.85
HMGB3-202ENST00000419110 HIST1H4AP62805 103 aaKnown RBP3.5□□□□□ -1.85
HMGB3-202ENST00000419110 LINC00304Q8N9R0 145 aa3.5□□□□□ -1.85
HMGB3-202ENST00000419110 SCGB1A1P11684 91 aa3.49□□□□□ -1.85
HMGB3-202ENST00000419110 SPAG11AQ6PDA7 123 aa3.49□□□□□ -1.85
HMGB3-202ENST00000419110 PRR26Q8N8Z3 221 aa3.49□□□□□ -1.85
HMGB3-202ENST00000419110 FAM236AA0A1B0GUQ0 79 aa3.48□□□□□ -1.85
HMGB3-202ENST00000419110 FAM236BA0A1B0GV22 79 aa3.48□□□□□ -1.85
HMGB3-202ENST00000419110 SPINK1P00995 79 aa3.48□□□□□ -1.85
HMGB3-202ENST00000419110 RPS29P62273 56 aaKnown RBP3.48□□□□□ -1.85
HMGB3-202ENST00000419110 NDUFB1O75438 58 aa3.47□□□□□ -1.85
HMGB3-202ENST00000419110 ASB16-AS1Q495Z4 193 aa3.47□□□□□ -1.85
HMGB3-202ENST00000419110 Q5XG85 94 aa3.47□□□□□ -1.85
HMGB3-202ENST00000419110 EPPK1P58107 5090 aaKnown RBP3.47□□□□□ -1.85
HMGB3-202ENST00000419110 A0A087WVE0 104 aa3.46□□□□□ -1.86
HMGB3-202ENST00000419110 A8MWP4 228 aa3.46□□□□□ -1.86
HMGB3-202ENST00000419110 IGKV4-1P06312 121 aa3.46□□□□□ -1.86
HMGB3-202ENST00000419110 LINC00472Q9H8W2 130 aa3.46□□□□□ -1.86
HMGB3-202ENST00000419110 KIAA1109Q2LD37 5005 aa3.46□□□□□ -1.86
HMGB3-202ENST00000419110 K7EQZ3 153 aa3.45□□□□□ -1.86
HMGB3-202ENST00000419110 ATOX1O00244 68 aa3.45□□□□□ -1.86
HMGB3-202ENST00000419110 Q8N9L7 120 aa3.45□□□□□ -1.86
HMGB3-202ENST00000419110 Q96NJ1 140 aa3.45□□□□□ -1.86
HMGB3-202ENST00000419110 DSCR10P59022 87 aa3.44□□□□□ -1.86
HMGB3-202ENST00000419110 DEFB116Q30KQ4 102 aa3.44□□□□□ -1.86
HMGB3-202ENST00000419110 FLG2Q5D862 2391 aaPredicted RBP3.44□□□□□ -1.86
HMGB3-202ENST00000419110 A0A1B0GVX0 72 aa3.43□□□□□ -1.86
HMGB3-202ENST00000419110 HCG22E2RYF7 251 aa3.43□□□□□ -1.86
HMGB3-202ENST00000419110 PRR15Q8IV56 129 aa3.43□□□□□ -1.86
HMGB3-202ENST00000419110 C8orf87E5RJ46 101 aa3.42□□□□□ -1.86
HMGB3-202ENST00000419110 PCP4P48539 62 aa3.42□□□□□ -1.86
HMGB3-202ENST00000419110 SMIM20Q8N5G0 67 aa3.42□□□□□ -1.86
HMGB3-202ENST00000419110 ANAPC13Q9BS18 74 aa3.42□□□□□ -1.86
HMGB3-202ENST00000419110 BIRC6Q9NR09 4857 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 IGHV6-1A0A0B4J1U7 121 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 OXTP01178 125 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 C1orf195Q5TG92 126 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 WFDC13Q8IUB5 93 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 C8orf17Q9NRJ1 99 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 FAT3Q8TDW7 4589 aa3.41□□□□□ -1.86
HMGB3-202ENST00000419110 MMP24-AS1A0A0U1RRL7 71 aa3.4□□□□□ -1.87
HMGB3-202ENST00000419110 CASC2Q6XLA1 102 aa3.4□□□□□ -1.87
HMGB3-202ENST00000419110 hDV103S1A0JD37 113 aa3.39□□□□□ -1.87
HMGB3-202ENST00000419110 TMEM254Q8TBM7 123 aa3.39□□□□□ -1.87
HMGB3-202ENST00000419110 TNXBP22105 4242 aa3.39□□□□□ -1.87
HMGB3-202ENST00000419110 KRTAP10-8P60410 259 aa3.38□□□□□ -1.87
HMGB3-202ENST00000419110 TRAV7A0A075B6U4 112 aa3.37□□□□□ -1.87
HMGB3-202ENST00000419110 FP248Q71RG6 208 aaPredicted RBP3.37□□□□□ -1.87
HMGB3-202ENST00000419110 SERP2Q8N6R1 65 aa3.37□□□□□ -1.87
HMGB3-202ENST00000419110 KRTAP29-1A8MX34 341 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-202ENST00000419110 NDUFS5O43920 106 aa3.36□□□□□ -1.87
HMGB3-202ENST00000419110 MT1HL1P0DM35 61 aa3.36□□□□□ -1.87
HMGB3-202ENST00000419110 RETNLBQ9BQ08 111 aa3.36□□□□□ -1.87
HMGB3-202ENST00000419110 MRPL34Q9BQ48 92 aaKnown RBP3.36□□□□□ -1.87
HMGB3-202ENST00000419110 LRP1Q07954 4544 aaKnown RBP3.36□□□□□ -1.87
HMGB3-202ENST00000419110 HERC2O95714 4834 aa3.36□□□□□ -1.87
HMGB3-202ENST00000419110 COX7CP15954 63 aa3.35□□□□□ -1.87
HMGB3-202ENST00000419110 LINC00313P59037 77 aa3.35□□□□□ -1.87
HMGB3-202ENST00000419110 MYCBP2O75592 4640 aa3.35□□□□□ -1.87
HMGB3-202ENST00000419110 UQCRQO14949 82 aa3.34□□□□□ -1.87
HMGB3-202ENST00000419110 KRTAP15-1Q3LI76 137 aa3.34□□□□□ -1.87
HMGB3-202ENST00000419110 OCR1Q9BZK8 76 aa3.34□□□□□ -1.87
HMGB3-202ENST00000419110 TP53AIP1Q9HCN2 124 aa3.34□□□□□ -1.87
HMGB3-202ENST00000419110 DMBT1Q9UGM3 2413 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-202ENST00000419110 TRAV22A0A0B4J277 110 aa3.33□□□□□ -1.88
HMGB3-202ENST00000419110 KRTAP23-1A1A580 65 aa3.33□□□□□ -1.88
HMGB3-202ENST00000419110 MP68P56378 58 aa3.33□□□□□ -1.88
HMGB3-202ENST00000419110 IGLV7-46A0A075B6I9 117 aa3.31□□□□□ -1.88
HMGB3-202ENST00000419110 C9orf92A6NGG3 77 aa3.31□□□□□ -1.88
HMGB3-202ENST00000419110 H0Y9P7 68 aa3.31□□□□□ -1.88
HMGB3-202ENST00000419110 NOTCH2NLQ7Z3S9 236 aa3.31□□□□□ -1.88
HMGB3-202ENST00000419110 C20orf197Q8N268 126 aa3.31□□□□□ -1.88
HMGB3-202ENST00000419110 ABCA13Q86UQ4 5058 aa3.3□□□□□ -1.88
HMGB3-202ENST00000419110 KRTAP16-1A8MUX0 517 aa3.3□□□□□ -1.88
HMGB3-202ENST00000419110 H3BPC8 53 aa3.3□□□□□ -1.88
HMGB3-202ENST00000419110 CCDC179H3BU77 68 aa3.3□□□□□ -1.88
HMGB3-202ENST00000419110 PRR4Q16378 134 aa3.3□□□□□ -1.88
HMGB3-202ENST00000419110 C5orf47Q569G3 176 aa3.29□□□□□ -1.88
HMGB3-202ENST00000419110 Q8N9P0 234 aaPredicted RBP3.29□□□□□ -1.88
HMGB3-202ENST00000419110 NDUFC1O43677 76 aa3.28□□□□□ -1.88
HMGB3-202ENST00000419110 KLKP1Q107X0 134 aa3.28□□□□□ -1.88
HMGB3-202ENST00000419110 TPRXLQ17RH7 258 aa3.28□□□□□ -1.88
HMGB3-202ENST00000419110 A0A0U1RQV1 116 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 LOC101927531A0A1B0GV80 90 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 A8MUU9 505 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 Q75L30 129 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 C20orf166-AS1Q96NR2 134 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 SNURFQ9Y675 71 aa3.27□□□□□ -1.89
HMGB3-202ENST00000419110 KRTAP13-3Q3SY46 172 aa3.26□□□□□ -1.89
HMGB3-202ENST00000419110 ZCCHC13Q8WW36 166 aaKnown RBP3.26□□□□□ -1.89
HMGB3-202ENST00000419110 LINC00208Q96KT6 92 aa3.26□□□□□ -1.89
HMGB3-202ENST00000419110 TMEM258P61165 79 aa3.25□□□□□ -1.89
HMGB3-202ENST00000419110 C1orf64Q8NEQ6 169 aa3.25□□□□□ -1.89
HMGB3-202ENST00000419110 ATP5EP56381 51 aaPredicted RBP3.24□□□□□ -1.89
HMGB3-202ENST00000419110 RPL37P61927 97 aaKnown RBP3.24□□□□□ -1.89
HMGB3-202ENST00000419110 Q5W150 140 aa3.24□□□□□ -1.89
HMGB3-202ENST00000419110 C7orf65Q6ZTY9 151 aa3.24□□□□□ -1.89
HMGB3-202ENST00000419110 FAM236DA0A1B0GTK5 79 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms