RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	C9orf92	A6NGG3	77 aa		7.26	□□□□□ -1.25
SF1-206	ENST00000413725	ETDB	Q3ZM63	59 aa		7.26	□□□□□ -1.25
SF1-206	ENST00000413725	LINC00472	Q9H8W2	130 aa		7.26	□□□□□ -1.25
SF1-206	ENST00000413725		J3KT08	172 aa		7.24	□□□□□ -1.25
SF1-206	ENST00000413725	KRTAP9-6	A0A140TA67	174 aa		7.23	□□□□□ -1.25
SF1-206	ENST00000413725	NREP	Q16612	68 aa		7.23	□□□□□ -1.25
SF1-206	ENST00000413725	DEFB116	Q30KQ4	102 aa		7.23	□□□□□ -1.25
SF1-206	ENST00000413725	UBR4	Q5T4S7	5183 aa		7.22	□□□□□ -1.25
SF1-206	ENST00000413725	NDUFB1	O75438	58 aa		7.17	□□□□□ -1.26
SF1-206	ENST00000413725		A0A1B0GVX0	72 aa		7.16	□□□□□ -1.26
SF1-206	ENST00000413725		Q6ZVQ6	151 aa		7.16	□□□□□ -1.26
SF1-206	ENST00000413725	UBL5	Q9BZL1	73 aa		7.16	□□□□□ -1.26
SF1-206	ENST00000413725	IGHV6-1	A0A0B4J1U7	121 aa		7.15	□□□□□ -1.26
SF1-206	ENST00000413725	LINC00313	P59037	77 aa		7.15	□□□□□ -1.26
SF1-206	ENST00000413725	SEC61B	P60468	96 aa	Known RBP	7.15	□□□□□ -1.26
SF1-206	ENST00000413725		A8MWP4	228 aa		7.14	□□□□□ -1.27
SF1-206	ENST00000413725	C8orf87	E5RJ46	101 aa		7.14	□□□□□ -1.27
SF1-206	ENST00000413725	DSCR10	P59022	87 aa		7.14	□□□□□ -1.27
SF1-206	ENST00000413725	LINC00846	Q9NV44	126 aa		7.14	□□□□□ -1.27
SF1-206	ENST00000413725	BPY2	O14599	106 aa		7.13	□□□□□ -1.27
SF1-206	ENST00000413725	RPL37	P61927	97 aa	Known RBP	7.11	□□□□□ -1.27
SF1-206	ENST00000413725	IGKV3D-7	A0A0C4DH55	119 aa		7.1	□□□□□ -1.27
SF1-206	ENST00000413725	ACYP1	P07311	99 aa		7.1	□□□□□ -1.27
SF1-206	ENST00000413725		Q75L30	129 aa		7.1	□□□□□ -1.27
SF1-206	ENST00000413725	FAM240A	A0A1B0GVK7	77 aa		7.09	□□□□□ -1.27
SF1-206	ENST00000413725	NOTCH2NL	Q7Z3S9	236 aa		7.09	□□□□□ -1.27
SF1-206	ENST00000413725	PRR15	Q8IV56	129 aa		7.09	□□□□□ -1.27
SF1-206	ENST00000413725	MUC17	Q685J3	4493 aa		7.08	□□□□□ -1.28
SF1-206	ENST00000413725	LCE3B	Q5TA77	95 aa		7.08	□□□□□ -1.28
SF1-206	ENST00000413725	C20orf166-AS1	Q96NR2	134 aa		7.08	□□□□□ -1.28
SF1-206	ENST00000413725	C8orf17	Q9NRJ1	99 aa		7.07	□□□□□ -1.28
SF1-206	ENST00000413725	KRTAP16-1	A8MUX0	517 aa		7.06	□□□□□ -1.28
SF1-206	ENST00000413725	PCOTH	Q58A44	107 aa		7.06	□□□□□ -1.28
SF1-206	ENST00000413725		A8MUU9	505 aa		7.05	□□□□□ -1.28
SF1-206	ENST00000413725		K7EQZ3	153 aa		7.05	□□□□□ -1.28
SF1-206	ENST00000413725	RNF213	Q63HN8	5207 aa		7.05	□□□□□ -1.28
SF1-206	ENST00000413725	ATP11AUN	Q6ZP68	121 aa		7.04	□□□□□ -1.28
SF1-206	ENST00000413725		J3QR89	54 aa		7.03	□□□□□ -1.28
SF1-206	ENST00000413725	CXCL6	P80162	114 aa		7.02	□□□□□ -1.29
SF1-206	ENST00000413725	MMP24-AS1	A0A0U1RRL7	71 aa		7.01	□□□□□ -1.29
SF1-206	ENST00000413725		Q8N9L7	120 aa		7.01	□□□□□ -1.29
SF1-206	ENST00000413725	hDV103S1	A0JD37	113 aa		6.99	□□□□□ -1.29
SF1-206	ENST00000413725		H3BS24	57 aa		6.99	□□□□□ -1.29
SF1-206	ENST00000413725	TMEM254	Q8TBM7	123 aa		6.99	□□□□□ -1.29
SF1-206	ENST00000413725	ATP5EP2	Q5VTU8	51 aa		6.98	□□□□□ -1.29
SF1-206	ENST00000413725		Q8N9P0	234 aa	Predicted RBP	6.98	□□□□□ -1.29
SF1-206	ENST00000413725	MRPL34	Q9BQ48	92 aa	Known RBP	6.97	□□□□□ -1.29
SF1-206	ENST00000413725	KRTAP4-12	Q9BQ66	201 aa		6.96	□□□□□ -1.3
SF1-206	ENST00000413725	CASC2	Q6XLA1	102 aa		6.95	□□□□□ -1.3
SF1-206	ENST00000413725	WFDC13	Q8IUB5	93 aa		6.95	□□□□□ -1.3
SF1-206	ENST00000413725		A0A0U1RQV1	116 aa		6.94	□□□□□ -1.3
SF1-206	ENST00000413725	HCG22	E2RYF7	251 aa		6.94	□□□□□ -1.3
SF1-206	ENST00000413725	LINC00643	Q86TS7	51 aa		6.94	□□□□□ -1.3
SF1-206	ENST00000413725	KRTAP4-1	Q9BYQ7	146 aa		6.94	□□□□□ -1.3
SF1-206	ENST00000413725	MUC2	Q02817	5179 aa		6.92	□□□□□ -1.3
SF1-206	ENST00000413725	NDUFS5	O43920	106 aa		6.92	□□□□□ -1.3
SF1-206	ENST00000413725	ZCCHC13	Q8WW36	166 aa	Known RBP	6.91	□□□□□ -1.3
SF1-206	ENST00000413725	KRTAP4-8	A0A0G2JLE6	195 aa		6.9	□□□□□ -1.3
SF1-206	ENST00000413725		K7ERU9	68 aa		6.9	□□□□□ -1.3
SF1-206	ENST00000413725	KRTAP9-9	Q9BYP9	154 aa		6.9	□□□□□ -1.3
SF1-206	ENST00000413725	KRTAP9-4	Q9BYQ2	154 aa		6.9	□□□□□ -1.3
SF1-206	ENST00000413725	HIST1H4A	P62805	103 aa	Known RBP	6.88	□□□□□ -1.31
SF1-206	ENST00000413725	TP53AIP1	Q9HCN2	124 aa		6.8	□□□□□ -1.32
SF1-206	ENST00000413725	FAT4	Q6V0I7	4981 aa		6.8	□□□□□ -1.32
SF1-206	ENST00000413725		A0A087WVE0	104 aa		6.78	□□□□□ -1.32
SF1-206	ENST00000413725	SPINK7	P58062	85 aa		6.78	□□□□□ -1.32
SF1-206	ENST00000413725		Q5W150	140 aa		6.77	□□□□□ -1.33
SF1-206	ENST00000413725	COX6B2	Q6YFQ2	88 aa		6.76	□□□□□ -1.33
SF1-206	ENST00000413725	KRTAP19-2	Q3LHN2	52 aa		6.73	□□□□□ -1.33
SF1-206	ENST00000413725	C7orf65	Q6ZTY9	151 aa		6.73	□□□□□ -1.33
SF1-206	ENST00000413725	RBM12B-AS1	Q9P1G2	102 aa		6.73	□□□□□ -1.33
SF1-206	ENST00000413725	IGKV2D-30	A0A075B6S6	120 aa		6.72	□□□□□ -1.33
SF1-206	ENST00000413725	IGKV2-30	P06310	120 aa		6.72	□□□□□ -1.33
SF1-206	ENST00000413725	HRES1	P13985	223 aa		6.72	□□□□□ -1.33
SF1-206	ENST00000413725	IMUP	Q9GZP8	106 aa		6.72	□□□□□ -1.33
SF1-206	ENST00000413725	MT-ATP8	P03928	68 aa		6.71	□□□□□ -1.34
SF1-206	ENST00000413725	KRTAP19-1	Q8IUB9	90 aa		6.71	□□□□□ -1.34
SF1-206	ENST00000413725	FAM236D	A0A1B0GTK5	79 aa		6.7	□□□□□ -1.34
SF1-206	ENST00000413725	FAM236C	P0DP71	79 aa		6.7	□□□□□ -1.34
SF1-206	ENST00000413725	UQCRQ	O14949	82 aa		6.69	□□□□□ -1.34
SF1-206	ENST00000413725	KRTAP4-7	Q9BYR0	210 aa		6.69	□□□□□ -1.34
SF1-206	ENST00000413725	TRAV22	A0A0B4J277	110 aa		6.68	□□□□□ -1.34
SF1-206	ENST00000413725	MPLKIP	Q8TAP9	179 aa		6.68	□□□□□ -1.34
SF1-206	ENST00000413725	SCGB1A1	P11684	91 aa		6.66	□□□□□ -1.34
SF1-206	ENST00000413725	ATOX1	O00244	68 aa		6.64	□□□□□ -1.35
SF1-206	ENST00000413725		H0Y9P7	68 aa		6.63	□□□□□ -1.35
SF1-206	ENST00000413725	OCR1	Q9BZK8	76 aa		6.63	□□□□□ -1.35
SF1-206	ENST00000413725	FLG	P20930	4061 aa	Predicted RBP	6.62	□□□□□ -1.35
SF1-206	ENST00000413725	MT1H	P80294	61 aa		6.62	□□□□□ -1.35
SF1-206	ENST00000413725	LOC101927531	A0A1B0GV80	90 aa		6.61	□□□□□ -1.35
SF1-206	ENST00000413725	LCE1D	Q5T752	114 aa		6.61	□□□□□ -1.35
SF1-206	ENST00000413725	FAM236A	A0A1B0GUQ0	79 aa		6.59	□□□□□ -1.35
SF1-206	ENST00000413725	FAM236B	A0A1B0GV22	79 aa		6.59	□□□□□ -1.35
SF1-206	ENST00000413725	MP68	P56378	58 aa		6.59	□□□□□ -1.35
SF1-206	ENST00000413725		M0R2T5	61 aa		6.58	□□□□□ -1.36
SF1-206	ENST00000413725	CYP4F30P	Q9H0H9	118 aa		6.58	□□□□□ -1.36
SF1-206	ENST00000413725	C5orf47	Q569G3	176 aa		6.57	□□□□□ -1.36
SF1-206	ENST00000413725	SMIM20	Q8N5G0	67 aa		6.56	□□□□□ -1.36
SF1-206	ENST00000413725	C4orf26	Q17RF5	130 aa		6.55	□□□□□ -1.36
SF1-206	ENST00000413725	C1orf64	Q8NEQ6	169 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms