RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 C14orf132Q9NPU4 83 aa15.01□□□□□ -0.01
HMGB1-205ENST00000399494 PDE6GP18545 87 aa15□□□□□ -0.01
HMGB1-205ENST00000399494 LINC00472Q9H8W2 130 aa15□□□□□ -0.01
HMGB1-205ENST00000399494 H3BT86 120 aa14.99□□□□□ -0.01
HMGB1-205ENST00000399494 MTURNQ8N3F0 131 aa14.98□□□□□ -0.01
HMGB1-205ENST00000399494 SPCS1Q9Y6A9 102 aa14.98□□□□□ -0.01
HMGB1-205ENST00000399494 DSCR10P59022 87 aa14.95□□□□□ -0.02
HMGB1-205ENST00000399494 Q75L30 129 aa14.95□□□□□ -0.02
HMGB1-205ENST00000399494 PCP4L1A6NKN8 68 aa14.94□□□□□ -0.02
HMGB1-205ENST00000399494 A0A1B0GW54 56 aa14.91□□□□□ -0.02
HMGB1-205ENST00000399494 ATP11AUNQ6ZP68 121 aa14.91□□□□□ -0.02
HMGB1-205ENST00000399494 LINC00313P59037 77 aa14.9□□□□□ -0.02
HMGB1-205ENST00000399494 IGHV6-1A0A0B4J1U7 121 aa14.86□□□□□ -0.03
HMGB1-205ENST00000399494 J3KT08 172 aa14.86□□□□□ -0.03
HMGB1-205ENST00000399494 C20orf166-AS1Q96NR2 134 aa14.85□□□□□ -0.03
HMGB1-205ENST00000399494 A8MUU9 505 aa14.82□□□□□ -0.04
HMGB1-205ENST00000399494 A0A1B0GVX0 72 aa14.8□□□□□ -0.04
HMGB1-205ENST00000399494 K7EP34 96 aa14.77□□□□□ -0.05
HMGB1-205ENST00000399494 NOTCH2NLQ7Z3S9 236 aa14.77□□□□□ -0.05
HMGB1-205ENST00000399494 C8orf87E5RJ46 101 aa14.76□□□□□ -0.05
HMGB1-205ENST00000399494 NDUFB1O75438 58 aa14.75□□□□□ -0.05
HMGB1-205ENST00000399494 NREPQ16612 68 aa14.75□□□□□ -0.05
HMGB1-205ENST00000399494 KRTAP16-1A8MUX0 517 aa14.74□□□□□ -0.05
HMGB1-205ENST00000399494 SMCPP49901 116 aaPredicted RBP14.72□□□□□ -0.05
HMGB1-205ENST00000399494 GTF2H5Q6ZYL4 71 aa14.69□□□□□ -0.06
HMGB1-205ENST00000399494 A8MWP4 228 aa14.67□□□□□ -0.06
HMGB1-205ENST00000399494 PRO0461Q9UI25 63 aa14.66□□□□□ -0.06
HMGB1-205ENST00000399494 IGKV3D-7A0A0C4DH55 119 aa14.6□□□□□ -0.07
HMGB1-205ENST00000399494 KRTAP9-8Q9BYQ0 159 aa14.6□□□□□ -0.07
HMGB1-205ENST00000399494 C8orf17Q9NRJ1 99 aa14.58□□□□□ -0.08
HMGB1-205ENST00000399494 KRTAP9-1A8MXZ3 250 aaPredicted RBP14.57□□□□□ -0.08
HMGB1-205ENST00000399494 KRTAP9-7A8MTY7 169 aa14.55□□□□□ -0.08
HMGB1-205ENST00000399494 PRR15Q8IV56 129 aa14.54□□□□□ -0.08
HMGB1-205ENST00000399494 F8W1H4 67 aa14.52□□□□□ -0.09
HMGB1-205ENST00000399494 BPY2O14599 106 aa14.51□□□□□ -0.09
HMGB1-205ENST00000399494 USH2AO75445 5202 aa14.5□□□□□ -0.09
HMGB1-205ENST00000399494 Q6ZVQ6 151 aa14.5□□□□□ -0.09
HMGB1-205ENST00000399494 SSPOA2VEC9 5147 aa14.48□□□□□ -0.09
HMGB1-205ENST00000399494 K7EQZ3 153 aa14.46□□□□□ -0.09
HMGB1-205ENST00000399494 Q8N9P0 234 aaPredicted RBP14.44□□□□□ -0.1
HMGB1-205ENST00000399494 ZCCHC13Q8WW36 166 aaKnown RBP14.42□□□□□ -0.1
HMGB1-205ENST00000399494 UBL5Q9BZL1 73 aa14.42□□□□□ -0.1
HMGB1-205ENST00000399494 MMP24-AS1A0A0U1RRL7 71 aa14.41□□□□□ -0.1
HMGB1-205ENST00000399494 ETDBQ3ZM63 59 aa14.41□□□□□ -0.1
HMGB1-205ENST00000399494 LINC00846Q9NV44 126 aa14.39□□□□□ -0.11
HMGB1-205ENST00000399494 TMEM254Q8TBM7 123 aa14.38□□□□□ -0.11
HMGB1-205ENST00000399494 MRPL34Q9BQ48 92 aaKnown RBP14.36□□□□□ -0.11
HMGB1-205ENST00000399494 hDV103S1A0JD37 113 aa14.35□□□□□ -0.11
HMGB1-205ENST00000399494 Q8N9L7 120 aa14.32□□□□□ -0.12
HMGB1-205ENST00000399494 MT2AP02795 61 aa14.31□□□□□ -0.12
HMGB1-205ENST00000399494 NDUFS5O43920 106 aa14.29□□□□□ -0.12
HMGB1-205ENST00000399494 FAM236DA0A1B0GTK5 79 aa14.25□□□□□ -0.13
HMGB1-205ENST00000399494 FAM236CP0DP71 79 aa14.25□□□□□ -0.13
HMGB1-205ENST00000399494 WFDC13Q8IUB5 93 aa14.25□□□□□ -0.13
HMGB1-205ENST00000399494 RBM12B-AS1Q9P1G2 102 aa14.25□□□□□ -0.13
HMGB1-205ENST00000399494 FCGBPQ9Y6R7 5405 aaPredicted RBP14.24□□□□□ -0.13
HMGB1-205ENST00000399494 HRES1P13985 223 aa14.23□□□□□ -0.13
HMGB1-205ENST00000399494 LCE2BO14633 110 aa14.22□□□□□ -0.13
HMGB1-205ENST00000399494 CASC2Q6XLA1 102 aa14.22□□□□□ -0.13
HMGB1-205ENST00000399494 SPINK7P58062 85 aa14.21□□□□□ -0.13
HMGB1-205ENST00000399494 MT1FP04733 61 aa14.19□□□□□ -0.14
HMGB1-205ENST00000399494 KRTAP19-1Q8IUB9 90 aa14.18□□□□□ -0.14
HMGB1-205ENST00000399494 MPLKIPQ8TAP9 179 aa14.17□□□□□ -0.14
HMGB1-205ENST00000399494 KRTAP9-3Q9BYQ3 159 aa14.16□□□□□ -0.14
HMGB1-205ENST00000399494 HCG22E2RYF7 251 aa14.11□□□□□ -0.15
HMGB1-205ENST00000399494 A0A1B0GV90 55 aa14.1□□□□□ -0.15
HMGB1-205ENST00000399494 KRTAP10-10P60014 251 aa14.1□□□□□ -0.15
HMGB1-205ENST00000399494 CXCL6P80162 114 aa14.1□□□□□ -0.15
HMGB1-205ENST00000399494 ACYP1P07311 99 aa14.08□□□□□ -0.16
HMGB1-205ENST00000399494 FAM240AA0A1B0GVK7 77 aa14.01□□□□□ -0.17
HMGB1-205ENST00000399494 Q5W150 140 aa13.99□□□□□ -0.17
HMGB1-205ENST00000399494 IGKV2D-30A0A075B6S6 120 aa13.96□□□□□ -0.17
HMGB1-205ENST00000399494 IGKV2-30P06310 120 aa13.96□□□□□ -0.17
HMGB1-205ENST00000399494 C7orf65Q6ZTY9 151 aa13.93□□□□□ -0.18
HMGB1-205ENST00000399494 ATP5EP2Q5VTU8 51 aa13.89□□□□□ -0.19
HMGB1-205ENST00000399494 MACF1Q9UPN3 7388 aaKnown RBP13.86□□□□□ -0.19
HMGB1-205ENST00000399494 TP53AIP1Q9HCN2 124 aa13.84□□□□□ -0.19
HMGB1-205ENST00000399494 HIST1H4AP62805 103 aaKnown RBP13.8□□□□□ -0.2
HMGB1-205ENST00000399494 KRTAP19-6Q3LI70 58 aa13.79□□□□□ -0.2
HMGB1-205ENST00000399494 SYNE2Q8WXH0 6885 aaKnown RBP13.76□□□□□ -0.21
HMGB1-205ENST00000399494 LINC00643Q86TS7 51 aa13.74□□□□□ -0.21
HMGB1-205ENST00000399494 J3QR89 54 aa13.7□□□□□ -0.22
HMGB1-205ENST00000399494 H1FX-AS1Q4G0G2 97 aa13.68□□□□□ -0.22
HMGB1-205ENST00000399494 C4orf26Q17RF5 130 aa13.66□□□□□ -0.22
HMGB1-205ENST00000399494 A0A087WVE0 104 aa13.59□□□□□ -0.23
HMGB1-205ENST00000399494 TRAV22A0A0B4J277 110 aa13.58□□□□□ -0.24
HMGB1-205ENST00000399494 UQCRQO14949 82 aa13.51□□□□□ -0.25
HMGB1-205ENST00000399494 LOC101927531A0A1B0GV80 90 aa13.47□□□□□ -0.25
HMGB1-205ENST00000399494 KRTAP6-3Q3LI67 103 aa13.47□□□□□ -0.25
HMGB1-205ENST00000399494 C1orf64Q8NEQ6 169 aa13.46□□□□□ -0.25
HMGB1-205ENST00000399494 CYP4F30PQ9H0H9 118 aa13.46□□□□□ -0.25
HMGB1-205ENST00000399494 H0Y9P7 68 aa13.44□□□□□ -0.26
HMGB1-205ENST00000399494 ATOX1O00244 68 aa13.42□□□□□ -0.26
HMGB1-205ENST00000399494 KRTAP3-1Q9BYR8 98 aa13.37□□□□□ -0.27
HMGB1-205ENST00000399494 S4R3F8 94 aa13.32□□□□□ -0.28
HMGB1-205ENST00000399494 K7ERU9 68 aa13.31□□□□□ -0.28
HMGB1-205ENST00000399494 OCR1Q9BZK8 76 aa13.29□□□□□ -0.28
HMGB1-205ENST00000399494 MP68P56378 58 aa13.26□□□□□ -0.29
HMGB1-205ENST00000399494 C5orf47Q569G3 176 aa13.26□□□□□ -0.29
HMGB1-205ENST00000399494 LINC00208Q96KT6 92 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms