RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 FAM240AA0A1B0GVK7 77 aa9.04□□□□□ -0.96
CXCL1-201ENST00000395761 LINC00846Q9NV44 126 aa9.04□□□□□ -0.96
CXCL1-201ENST00000395761 J3QR89 54 aa9.01□□□□□ -0.97
CXCL1-201ENST00000395761 J3KT08 172 aa9□□□□□ -0.97
CXCL1-201ENST00000395761 Q6ZVQ6 151 aa9□□□□□ -0.97
CXCL1-201ENST00000395761 UBL5Q9BZL1 73 aa9□□□□□ -0.97
CXCL1-201ENST00000395761 SEC61BP60468 96 aaKnown RBP8.98□□□□□ -0.97
CXCL1-201ENST00000395761 IGKV4-1P06312 121 aa8.97□□□□□ -0.97
CXCL1-201ENST00000395761 DEFB116Q30KQ4 102 aa8.96□□□□□ -0.98
CXCL1-201ENST00000395761 SIGMAR1Q99720 223 aa8.94□□□□□ -0.98
CXCL1-201ENST00000395761 KRTAP4-1Q9BYQ7 146 aa8.94□□□□□ -0.98
CXCL1-201ENST00000395761 BPY2O14599 106 aa8.92□□□□□ -0.98
CXCL1-201ENST00000395761 K7ERU9 68 aa8.91□□□□□ -0.98
CXCL1-201ENST00000395761 PCOTHQ58A44 107 aa8.91□□□□□ -0.98
CXCL1-201ENST00000395761 A8MWP4 228 aa8.9□□□□□ -0.98
CXCL1-201ENST00000395761 DSCR10P59022 87 aa8.9□□□□□ -0.98
CXCL1-201ENST00000395761 NDUFB1O75438 58 aa8.89□□□□□ -0.99
CXCL1-201ENST00000395761 RPL37P61927 97 aaKnown RBP8.89□□□□□ -0.99
CXCL1-201ENST00000395761 IGKV3D-7A0A0C4DH55 119 aa8.87□□□□□ -0.99
CXCL1-201ENST00000395761 A0A1B0GVX0 72 aa8.87□□□□□ -0.99
CXCL1-201ENST00000395761 CXCL6P80162 114 aa8.87□□□□□ -0.99
CXCL1-201ENST00000395761 PRR15Q8IV56 129 aa8.86□□□□□ -0.99
CXCL1-201ENST00000395761 LORP23490 312 aaPredicted RBP8.85□□□□□ -0.99
CXCL1-201ENST00000395761 LINC00643Q86TS7 51 aa8.85□□□□□ -0.99
CXCL1-201ENST00000395761 IGHV6-1A0A0B4J1U7 121 aa8.83□□□□□ -1
CXCL1-201ENST00000395761 C8orf87E5RJ46 101 aa8.83□□□□□ -1
CXCL1-201ENST00000395761 LINC00313P59037 77 aa8.83□□□□□ -1
CXCL1-201ENST00000395761 ATP5EP2Q5VTU8 51 aa8.83□□□□□ -1
CXCL1-201ENST00000395761 K7EQZ3 153 aa8.81□□□□□ -1
CXCL1-201ENST00000395761 NOTCH2NLQ7Z3S9 236 aa8.81□□□□□ -1
CXCL1-201ENST00000395761 Q75L30 129 aa8.8□□□□□ -1
CXCL1-201ENST00000395761 A0A0U1RQV1 116 aa8.79□□□□□ -1
CXCL1-201ENST00000395761 FAT4Q6V0I7 4981 aa8.79□□□□□ -1
CXCL1-201ENST00000395761 C8orf17Q9NRJ1 99 aa8.78□□□□□ -1
CXCL1-201ENST00000395761 Q8N9L7 120 aa8.77□□□□□ -1.01
CXCL1-201ENST00000395761 C20orf166-AS1Q96NR2 134 aa8.77□□□□□ -1.01
CXCL1-201ENST00000395761 A8MUU9 505 aa8.76□□□□□ -1.01
CXCL1-201ENST00000395761 KRTAP16-1A8MUX0 517 aa8.76□□□□□ -1.01
CXCL1-201ENST00000395761 MMP24-AS1A0A0U1RRL7 71 aa8.74□□□□□ -1.01
CXCL1-201ENST00000395761 ATP11AUNQ6ZP68 121 aa8.74□□□□□ -1.01
CXCL1-201ENST00000395761 hDV103S1A0JD37 113 aa8.69□□□□□ -1.02
CXCL1-201ENST00000395761 TMEM254Q8TBM7 123 aa8.69□□□□□ -1.02
CXCL1-201ENST00000395761 HCG22E2RYF7 251 aa8.68□□□□□ -1.02
CXCL1-201ENST00000395761 Q8N9P0 234 aaPredicted RBP8.68□□□□□ -1.02
CXCL1-201ENST00000395761 CASC2Q6XLA1 102 aa8.67□□□□□ -1.02
CXCL1-201ENST00000395761 MRPL34Q9BQ48 92 aaKnown RBP8.67□□□□□ -1.02
CXCL1-201ENST00000395761 HIST1H4AP62805 103 aaKnown RBP8.66□□□□□ -1.02
CXCL1-201ENST00000395761 KRTAP19-2Q3LHN2 52 aa8.66□□□□□ -1.02
CXCL1-201ENST00000395761 IMUPQ9GZP8 106 aa8.65□□□□□ -1.02
CXCL1-201ENST00000395761 MT-ATP8P03928 68 aa8.64□□□□□ -1.03
CXCL1-201ENST00000395761 WFDC13Q8IUB5 93 aa8.64□□□□□ -1.03
CXCL1-201ENST00000395761 A0A087WVE0 104 aa8.59□□□□□ -1.03
CXCL1-201ENST00000395761 LOC100996750A0A140TA64 210 aa8.55□□□□□ -1.04
CXCL1-201ENST00000395761 KRTAP4-6Q9BYQ5 205 aa8.55□□□□□ -1.04
CXCL1-201ENST00000395761 NDUFS5O43920 106 aa8.53□□□□□ -1.04
CXCL1-201ENST00000395761 ZCCHC13Q8WW36 166 aaKnown RBP8.52□□□□□ -1.05
CXCL1-201ENST00000395761 TP53AIP1Q9HCN2 124 aa8.52□□□□□ -1.05
CXCL1-201ENST00000395761 MT1HP80294 61 aa8.49□□□□□ -1.05
CXCL1-201ENST00000395761 COX6B2Q6YFQ2 88 aa8.49□□□□□ -1.05
CXCL1-201ENST00000395761 Q5W150 140 aa8.45□□□□□ -1.06
CXCL1-201ENST00000395761 UQCRQO14949 82 aa8.43□□□□□ -1.06
CXCL1-201ENST00000395761 SCGB1A1P11684 91 aa8.43□□□□□ -1.06
CXCL1-201ENST00000395761 HRES1P13985 223 aa8.42□□□□□ -1.06
CXCL1-201ENST00000395761 OCR1Q9BZK8 76 aa8.42□□□□□ -1.06
CXCL1-201ENST00000395761 FAM236AA0A1B0GUQ0 79 aa8.41□□□□□ -1.06
CXCL1-201ENST00000395761 FAM236BA0A1B0GV22 79 aa8.41□□□□□ -1.06
CXCL1-201ENST00000395761 SPINK7P58062 85 aa8.4□□□□□ -1.06
CXCL1-201ENST00000395761 FLGP20930 4061 aaPredicted RBP8.39□□□□□ -1.07
CXCL1-201ENST00000395761 MPLKIPQ8TAP9 179 aa8.38□□□□□ -1.07
CXCL1-201ENST00000395761 SMIM20Q8N5G0 67 aa8.36□□□□□ -1.07
CXCL1-201ENST00000395761 TRAV22A0A0B4J277 110 aa8.35□□□□□ -1.07
CXCL1-201ENST00000395761 ATOX1O00244 68 aa8.34□□□□□ -1.07
CXCL1-201ENST00000395761 M0R2T5 61 aa8.33□□□□□ -1.08
CXCL1-201ENST00000395761 C5orf47Q569G3 176 aa8.33□□□□□ -1.08
CXCL1-201ENST00000395761 RBM12B-AS1Q9P1G2 102 aa8.32□□□□□ -1.08
CXCL1-201ENST00000395761 TRAV7A0A075B6U4 112 aa8.31□□□□□ -1.08
CXCL1-201ENST00000395761 FAM236DA0A1B0GTK5 79 aa8.31□□□□□ -1.08
CXCL1-201ENST00000395761 IGKV2-30P06310 120 aa8.31□□□□□ -1.08
CXCL1-201ENST00000395761 FAM236CP0DP71 79 aa8.31□□□□□ -1.08
CXCL1-201ENST00000395761 H0Y9P7 68 aa8.3□□□□□ -1.08
CXCL1-201ENST00000395761 KRTAP10-6P60371 365 aaPredicted RBP8.29□□□□□ -1.08
CXCL1-201ENST00000395761 C7orf65Q6ZTY9 151 aa8.29□□□□□ -1.08
CXCL1-201ENST00000395761 IGKV2D-30A0A075B6S6 120 aa8.27□□□□□ -1.09
CXCL1-201ENST00000395761 LOC101927531A0A1B0GV80 90 aa8.26□□□□□ -1.09
CXCL1-201ENST00000395761 H3BPC8 53 aa8.26□□□□□ -1.09
CXCL1-201ENST00000395761 MP68P56378 58 aa8.26□□□□□ -1.09
CXCL1-201ENST00000395761 CYP4F30PQ9H0H9 118 aa8.24□□□□□ -1.09
CXCL1-201ENST00000395761 SERP2Q8N6R1 65 aa8.23□□□□□ -1.09
CXCL1-201ENST00000395761 C1orf64Q8NEQ6 169 aa8.22□□□□□ -1.09
CXCL1-201ENST00000395761 LINC00208Q96KT6 92 aa8.22□□□□□ -1.09
CXCL1-201ENST00000395761 KRTAP9-2Q9BYQ4 174 aa8.21□□□□□ -1.1
CXCL1-201ENST00000395761 COX7CP15954 63 aa8.13□□□□□ -1.11
CXCL1-201ENST00000395761 KLKP1Q107X0 134 aa8.1□□□□□ -1.11
CXCL1-201ENST00000395761 ANAPC13Q9BS18 74 aa8.1□□□□□ -1.11
CXCL1-201ENST00000395761 C4orf26Q17RF5 130 aa8.09□□□□□ -1.11
CXCL1-201ENST00000395761 KRTAP9-8Q9BYQ0 159 aa8.09□□□□□ -1.11
CXCL1-201ENST00000395761 C20orf197Q8N268 126 aa8.08□□□□□ -1.12
CXCL1-201ENST00000395761 H1FX-AS1Q4G0G2 97 aa8.06□□□□□ -1.12
CXCL1-201ENST00000395761 SNURFQ9Y675 71 aa8.04□□□□□ -1.12
CXCL1-201ENST00000395761 KRTAP3-1Q9BYR8 98 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms