RNA–Protein interactions for RNA: ENST00000389416.8

PTPRN2-202, Transcript of protein tyrosine phosphatase, receptor type N2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRN2, Length 4,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN2-202ENST00000389416 TGP01266 2768 aa7.79□□□□□ -1.16
PTPRN2-202ENST00000389416 Q6ZSA8 131 aa7.78□□□□□ -1.16
PTPRN2-202ENST00000389416 RBM12B-AS1Q9P1G2 102 aa7.77□□□□□ -1.17
PTPRN2-202ENST00000389416 LINC00483Q53H64 154 aa7.77□□□□□ -1.17
PTPRN2-202ENST00000389416 SPENQ96T58 3664 aaKnown RBP7.75□□□□□ -1.17
PTPRN2-202ENST00000389416 LCA10Q71F78 164 aa7.74□□□□□ -1.17
PTPRN2-202ENST00000389416 CUBNO60494 3623 aa7.74□□□□□ -1.17
PTPRN2-202ENST00000389416 Q5XG85 94 aa7.73□□□□□ -1.17
PTPRN2-202ENST00000389416 Q8N9P0 234 aaPredicted RBP7.7□□□□□ -1.18
PTPRN2-202ENST00000389416 ZCCHC13Q8WW36 166 aaKnown RBP7.69□□□□□ -1.18
PTPRN2-202ENST00000389416 HRES1P13985 223 aa7.68□□□□□ -1.18
PTPRN2-202ENST00000389416 SPANXA2-OT1Q8N9U9 137 aa7.68□□□□□ -1.18
PTPRN2-202ENST00000389416 Q1T7F1 81 aa7.65□□□□□ -1.18
PTPRN2-202ENST00000389416 UQCR11O14957 56 aa7.64□□□□□ -1.19
PTPRN2-202ENST00000389416 CYSTM1Q9H1C7 97 aa7.64□□□□□ -1.19
PTPRN2-202ENST00000389416 Q5W150 140 aa7.63□□□□□ -1.19
PTPRN2-202ENST00000389416 FP248Q71RG6 208 aaPredicted RBP7.62□□□□□ -1.19
PTPRN2-202ENST00000389416 SPINK7P58062 85 aa7.62□□□□□ -1.19
PTPRN2-202ENST00000389416 KRTAP13-1Q8IUC0 172 aa7.62□□□□□ -1.19
PTPRN2-202ENST00000389416 CDC42SE1Q9NRR8 79 aa7.62□□□□□ -1.19
PTPRN2-202ENST00000389416 KRTAP13-2Q52LG2 175 aa7.59□□□□□ -1.19
PTPRN2-202ENST00000389416 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
PTPRN2-202ENST00000389416 LINC01554Q52M75 96 aa7.57□□□□□ -1.2
PTPRN2-202ENST00000389416 MIR22HGQ0VDD5 57 aa7.57□□□□□ -1.2
PTPRN2-202ENST00000389416 SPINT4Q6UDR6 99 aa7.57□□□□□ -1.2
PTPRN2-202ENST00000389416 SRRM2Q9UQ35 2752 aaKnown RBP7.56□□□□□ -1.2
PTPRN2-202ENST00000389416 BSNQ9UPA5 3926 aa7.56□□□□□ -1.2
PTPRN2-202ENST00000389416 OXTP01178 125 aa7.55□□□□□ -1.2
PTPRN2-202ENST00000389416 SEC61BP60468 96 aaKnown RBP7.54□□□□□ -1.2
PTPRN2-202ENST00000389416 M0R2T5 61 aa7.53□□□□□ -1.2
PTPRN2-202ENST00000389416 KRTAP29-1A8MX34 341 aaPredicted RBP7.51□□□□□ -1.21
PTPRN2-202ENST00000389416 A0A0D9SG42 100 aa7.51□□□□□ -1.21
PTPRN2-202ENST00000389416 H3BS24 57 aa7.47□□□□□ -1.21
PTPRN2-202ENST00000389416 Q75L30 129 aa7.47□□□□□ -1.21
PTPRN2-202ENST00000389416 TRRAPQ9Y4A5 3859 aa7.47□□□□□ -1.21
PTPRN2-202ENST00000389416 ASB16-AS1Q495Z4 193 aa7.45□□□□□ -1.22
PTPRN2-202ENST00000389416 CSAG1Q6PB30 78 aa7.44□□□□□ -1.22
PTPRN2-202ENST00000389416 ANK3Q12955 4377 aaKnown RBP7.42□□□□□ -1.22
PTPRN2-202ENST00000389416 RPS29P62273 56 aaKnown RBP7.41□□□□□ -1.22
PTPRN2-202ENST00000389416 S4R3F8 94 aa7.41□□□□□ -1.22
PTPRN2-202ENST00000389416 Q5VV11 94 aa7.39□□□□□ -1.23
PTPRN2-202ENST00000389416 A0A1B0GU33 70 aa7.37□□□□□ -1.23
PTPRN2-202ENST00000389416 LINC01558Q9Y6Z2 57 aa7.36□□□□□ -1.23
PTPRN2-202ENST00000389416 KRTAP1-4P0C5Y4 121 aa7.36□□□□□ -1.23
PTPRN2-202ENST00000389416 FBN3Q75N90 2809 aa7.36□□□□□ -1.23
PTPRN2-202ENST00000389416 PRAC1Q96KF2 57 aa7.34□□□□□ -1.24
PTPRN2-202ENST00000389416 CRIPTQ9P021 101 aa7.34□□□□□ -1.24
PTPRN2-202ENST00000389416 DMAC1Q96GE9 116 aa7.32□□□□□ -1.24
PTPRN2-202ENST00000389416 CAMK2N1Q7Z7J9 78 aa7.25□□□□□ -1.25
PTPRN2-202ENST00000389416 COL7A1Q02388 2944 aa7.25□□□□□ -1.25
PTPRN2-202ENST00000389416 R4GN34 69 aa7.24□□□□□ -1.25
PTPRN2-202ENST00000389416 RPL37P61927 97 aaKnown RBP7.22□□□□□ -1.25
PTPRN2-202ENST00000389416 A0A1B0GVY2 172 aa7.19□□□□□ -1.26
PTPRN2-202ENST00000389416 MEGF8Q7Z7M0 2845 aa7.18□□□□□ -1.26
PTPRN2-202ENST00000389416 A8MUU9 505 aa7.15□□□□□ -1.27
PTPRN2-202ENST00000389416 H1FX-AS1Q4G0G2 97 aa7.14□□□□□ -1.27
PTPRN2-202ENST00000389416 C20orf166-AS1Q96NR2 134 aa7.13□□□□□ -1.27
PTPRN2-202ENST00000389416 M0QZ58 72 aa7.12□□□□□ -1.27
PTPRN2-202ENST00000389416 VPS13CQ709C8 3753 aa7.12□□□□□ -1.27
PTPRN2-202ENST00000389416 ZNF469Q96JG9 3925 aaPredicted RBP7.12□□□□□ -1.27
PTPRN2-202ENST00000389416 ADM2Q7Z4H4 148 aa7.12□□□□□ -1.27
PTPRN2-202ENST00000389416 XP32Q5T750 250 aa7.09□□□□□ -1.27
PTPRN2-202ENST00000389416 LUZP6Q538Z0 58 aa7.06□□□□□ -1.28
PTPRN2-202ENST00000389416 SPATA8Q6RVD6 105 aa7.06□□□□□ -1.28
PTPRN2-202ENST00000389416 A6NN06 94 aa7.06□□□□□ -1.28
PTPRN2-202ENST00000389416 KRTAP10-8P60410 259 aa7□□□□□ -1.29
PTPRN2-202ENST00000389416 TPRXLQ17RH7 258 aa6.97□□□□□ -1.29
PTPRN2-202ENST00000389416 KRTAP16-1A8MUX0 517 aa6.96□□□□□ -1.3
PTPRN2-202ENST00000389416 KRTAP13-3Q3SY46 172 aa6.94□□□□□ -1.3
PTPRN2-202ENST00000389416 A8MU10 97 aa6.94□□□□□ -1.3
PTPRN2-202ENST00000389416 A0A0A0MQY5 61 aa6.91□□□□□ -1.3
PTPRN2-202ENST00000389416 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
PTPRN2-202ENST00000389416 AKAP9Q99996 3911 aa6.86□□□□□ -1.31
PTPRN2-202ENST00000389416 ROMO1P60602 79 aa6.86□□□□□ -1.31
PTPRN2-202ENST00000389416 HUWE1Q7Z6Z7 4374 aaKnown RBP6.82□□□□□ -1.32
PTPRN2-202ENST00000389416 KRTAP25-1Q3LHN0 102 aa6.8□□□□□ -1.32
PTPRN2-202ENST00000389416 DNHD1Q96M86 4753 aa6.78□□□□□ -1.32
PTPRN2-202ENST00000389416 CSMD3Q7Z407 3707 aa6.7□□□□□ -1.34
PTPRN2-202ENST00000389416 NDUFAF8A1L188 74 aa6.66□□□□□ -1.34
PTPRN2-202ENST00000389416 DNAH9Q9NYC9 4486 aa6.64□□□□□ -1.35
PTPRN2-202ENST00000389416 MT1HL1P0DM35 61 aa6.62□□□□□ -1.35
PTPRN2-202ENST00000389416 KRTAP4-5Q9BYR2 181 aa6.62□□□□□ -1.35
PTPRN2-202ENST00000389416 KRTAP10-10P60014 251 aa6.61□□□□□ -1.35
PTPRN2-202ENST00000389416 P0C880 135 aa6.59□□□□□ -1.35
PTPRN2-202ENST00000389416 KRTAP10-4P60372 401 aaPredicted RBP6.58□□□□□ -1.36
PTPRN2-202ENST00000389416 H0YAA0 97 aa6.52□□□□□ -1.37
PTPRN2-202ENST00000389416 TNP1P09430 55 aa6.48□□□□□ -1.37
PTPRN2-202ENST00000389416 PLECQ15149 4684 aaKnown RBP6.47□□□□□ -1.37
PTPRN2-202ENST00000389416 KRTAP3-1Q9BYR8 98 aa6.46□□□□□ -1.38
PTPRN2-202ENST00000389416 DNAH5Q8TE73 4624 aa6.44□□□□□ -1.38
PTPRN2-202ENST00000389416 DNAH11Q96DT5 4516 aa6.37□□□□□ -1.39
PTPRN2-202ENST00000389416 C10orf95Q9H7T3 257 aa6.36□□□□□ -1.39
PTPRN2-202ENST00000389416 PRKDCP78527 4128 aaKnown RBP6.35□□□□□ -1.39
PTPRN2-202ENST00000389416 DNAH1Q9P2D7 4330 aa6.34□□□□□ -1.39
PTPRN2-202ENST00000389416 STARD9Q9P2P6 4700 aa6.31□□□□□ -1.4
PTPRN2-202ENST00000389416 ALMS1Q8TCU4 4167 aa6.31□□□□□ -1.4
PTPRN2-202ENST00000389416 VPS13DQ5THJ4 4388 aa6.25□□□□□ -1.41
PTPRN2-202ENST00000389416 FAT1Q14517 4588 aa6.25□□□□□ -1.41
PTPRN2-202ENST00000389416 DNAH10Q8IVF4 4471 aa6.24□□□□□ -1.41
PTPRN2-202ENST00000389416 PRO2289Q9P1D8 64 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms