RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FLG2Q5D862 2391 aaPredicted RBP6.02□□□□□ -1.45
VPS53-202ENST00000389040 KLKP1Q107X0 134 aa6.01□□□□□ -1.45
VPS53-202ENST00000389040 HCG22E2RYF7 251 aa6.01□□□□□ -1.45
VPS53-202ENST00000389040 MT1HL1P0DM35 61 aa6.01□□□□□ -1.45
VPS53-202ENST00000389040 LINC00472Q9H8W2 130 aa6.01□□□□□ -1.45
VPS53-202ENST00000389040 SNURFQ9Y675 71 aa5.99□□□□□ -1.45
VPS53-202ENST00000389040 MOBPQ13875 183 aa5.99□□□□□ -1.45
VPS53-202ENST00000389040 PRR26Q8N8Z3 221 aa5.99□□□□□ -1.45
VPS53-202ENST00000389040 ANAPC11Q9NYG5 84 aa5.99□□□□□ -1.45
VPS53-202ENST00000389040 TMEM254Q8TBM7 123 aa5.98□□□□□ -1.45
VPS53-202ENST00000389040 A8MWP4 228 aa5.97□□□□□ -1.45
VPS53-202ENST00000389040 A0A087X002 238 aa5.97□□□□□ -1.45
VPS53-202ENST00000389040 H7BZZ5 65 aa5.97□□□□□ -1.45
VPS53-202ENST00000389040 PRR15Q8IV56 129 aa5.97□□□□□ -1.45
VPS53-202ENST00000389040 TYMSOSQ8TAI1 123 aa5.97□□□□□ -1.45
VPS53-202ENST00000389040 LRP1Q07954 4544 aaKnown RBP5.97□□□□□ -1.45
VPS53-202ENST00000389040 FAT3Q8TDW7 4589 aa5.96□□□□□ -1.45
VPS53-202ENST00000389040 J3KT08 172 aa5.96□□□□□ -1.46
VPS53-202ENST00000389040 HRCT1Q6UXD1 115 aa5.96□□□□□ -1.46
VPS53-202ENST00000389040 NDUFC1O43677 76 aa5.95□□□□□ -1.46
VPS53-202ENST00000389040 SSBP3-AS1Q7Z2R9 100 aa5.95□□□□□ -1.46
VPS53-202ENST00000389040 WFDC13Q8IUB5 93 aa5.95□□□□□ -1.46
VPS53-202ENST00000389040 DMBT1Q9UGM3 2413 aaPredicted RBP5.94□□□□□ -1.46
VPS53-202ENST00000389040 A0A0U1RQV1 116 aa5.94□□□□□ -1.46
VPS53-202ENST00000389040 Q96NJ1 140 aa5.94□□□□□ -1.46
VPS53-202ENST00000389040 KRTAP13-2Q52LG2 175 aa5.93□□□□□ -1.46
VPS53-202ENST00000389040 SPAG11AQ6PDA7 123 aa5.93□□□□□ -1.46
VPS53-202ENST00000389040 FAM236DA0A1B0GTK5 79 aa5.93□□□□□ -1.46
VPS53-202ENST00000389040 FAM236CP0DP71 79 aa5.93□□□□□ -1.46
VPS53-202ENST00000389040 CASC2Q6XLA1 102 aa5.92□□□□□ -1.46
VPS53-202ENST00000389040 NDUFB1O75438 58 aa5.91□□□□□ -1.46
VPS53-202ENST00000389040 RPS28P62857 69 aaKnown RBP5.91□□□□□ -1.46
VPS53-202ENST00000389040 TNXBP22105 4242 aa5.91□□□□□ -1.46
VPS53-202ENST00000389040 C5orf47Q569G3 176 aa5.9□□□□□ -1.46
VPS53-202ENST00000389040 MMP24-AS1A0A0U1RRL7 71 aa5.89□□□□□ -1.47
VPS53-202ENST00000389040 LINC00304Q8N9R0 145 aa5.89□□□□□ -1.47
VPS53-202ENST00000389040 SPINK1P00995 79 aa5.88□□□□□ -1.47
VPS53-202ENST00000389040 RPS29P62273 56 aaKnown RBP5.88□□□□□ -1.47
VPS53-202ENST00000389040 CD164Q04900 197 aa5.88□□□□□ -1.47
VPS53-202ENST00000389040 ATP5EP56381 51 aaPredicted RBP5.87□□□□□ -1.47
VPS53-202ENST00000389040 A0A1B0GVX0 72 aa5.86□□□□□ -1.47
VPS53-202ENST00000389040 hDV103S1A0JD37 113 aa5.86□□□□□ -1.47
VPS53-202ENST00000389040 ZCCHC13Q8WW36 166 aaKnown RBP5.86□□□□□ -1.47
VPS53-202ENST00000389040 IGHV6-1A0A0B4J1U7 121 aa5.85□□□□□ -1.47
VPS53-202ENST00000389040 MP68P56378 58 aa5.85□□□□□ -1.47
VPS53-202ENST00000389040 ASB16-AS1Q495Z4 193 aa5.85□□□□□ -1.47
VPS53-202ENST00000389040 C8orf17Q9NRJ1 99 aa5.85□□□□□ -1.47
VPS53-202ENST00000389040 SERP1Q9Y6X1 66 aa5.84□□□□□ -1.48
VPS53-202ENST00000389040 HERC1Q15751 4861 aa5.82□□□□□ -1.48
VPS53-202ENST00000389040 H0Y9P7 68 aa5.82□□□□□ -1.48
VPS53-202ENST00000389040 H3BPC8 53 aa5.8□□□□□ -1.48
VPS53-202ENST00000389040 Q5XG85 94 aa5.8□□□□□ -1.48
VPS53-202ENST00000389040 LINC00208Q96KT6 92 aa5.8□□□□□ -1.48
VPS53-202ENST00000389040 LIMD2Q9BT23 127 aa5.8□□□□□ -1.48
VPS53-202ENST00000389040 TP53AIP1Q9HCN2 124 aa5.8□□□□□ -1.48
VPS53-202ENST00000389040 TRAV22A0A0B4J277 110 aa5.79□□□□□ -1.48
VPS53-202ENST00000389040 NOTCH2NLQ7Z3S9 236 aa5.78□□□□□ -1.48
VPS53-202ENST00000389040 MRPL34Q9BQ48 92 aaKnown RBP5.78□□□□□ -1.48
VPS53-202ENST00000389040 FP248Q71RG6 208 aaPredicted RBP5.78□□□□□ -1.48
VPS53-202ENST00000389040 NDUFS5O43920 106 aa5.76□□□□□ -1.49
VPS53-202ENST00000389040 C1orf64Q8NEQ6 169 aa5.76□□□□□ -1.49
VPS53-202ENST00000389040 C8orf87E5RJ46 101 aa5.74□□□□□ -1.49
VPS53-202ENST00000389040 C1orf195Q5TG92 126 aa5.74□□□□□ -1.49
VPS53-202ENST00000389040 PRR4Q16378 134 aa5.73□□□□□ -1.49
VPS53-202ENST00000389040 CYP4F30PQ9H0H9 118 aa5.72□□□□□ -1.49
VPS53-202ENST00000389040 SMIM26A0A096LP01 95 aa5.71□□□□□ -1.5
VPS53-202ENST00000389040 SPANXA2-OT1Q8N9U9 137 aa5.71□□□□□ -1.5
VPS53-202ENST00000389040 IGLV7-46A0A075B6I9 117 aa5.7□□□□□ -1.5
VPS53-202ENST00000389040 LINC00313P59037 77 aa5.7□□□□□ -1.5
VPS53-202ENST00000389040 TPRXLQ17RH7 258 aa5.7□□□□□ -1.5
VPS53-202ENST00000389040 HMCN2Q8NDA2 5059 aa5.69□□□□□ -1.5
VPS53-202ENST00000389040 RETNLBQ9BQ08 111 aa5.68□□□□□ -1.5
VPS53-202ENST00000389040 KRTAP13-3Q3SY46 172 aa5.66□□□□□ -1.5
VPS53-202ENST00000389040 C4orf26Q17RF5 130 aa5.66□□□□□ -1.5
VPS53-202ENST00000389040 PCOTHQ58A44 107 aa5.66□□□□□ -1.5
VPS53-202ENST00000389040 Q5W150 140 aa5.66□□□□□ -1.5
VPS53-202ENST00000389040 Q8N9P0 234 aaPredicted RBP5.66□□□□□ -1.5
VPS53-202ENST00000389040 LOC101927531A0A1B0GV80 90 aa5.64□□□□□ -1.51
VPS53-202ENST00000389040 KRTAP16-1A8MUX0 517 aa5.64□□□□□ -1.51
VPS53-202ENST00000389040 MPLKIPQ8TAP9 179 aa5.6□□□□□ -1.51
VPS53-202ENST00000389040 SEC61GP60059 68 aa5.58□□□□□ -1.52
VPS53-202ENST00000389040 COA5Q86WW8 74 aa5.56□□□□□ -1.52
VPS53-202ENST00000389040 LRP2P98164 4655 aa5.56□□□□□ -1.52
VPS53-202ENST00000389040 Q1T7F1 81 aa5.55□□□□□ -1.52
VPS53-202ENST00000389040 XP32Q5T750 250 aa5.55□□□□□ -1.52
VPS53-202ENST00000389040 IGKV2-30P06310 120 aa5.54□□□□□ -1.52
VPS53-202ENST00000389040 LPAP08519 4548 aa5.53□□□□□ -1.52
VPS53-202ENST00000389040 HRES1P13985 223 aa5.52□□□□□ -1.53
VPS53-202ENST00000389040 SEC61BP60468 96 aaKnown RBP5.52□□□□□ -1.53
VPS53-202ENST00000389040 PRO0628Q9UI54 55 aa5.5□□□□□ -1.53
VPS53-202ENST00000389040 V9GYY9 64 aa5.5□□□□□ -1.53
VPS53-202ENST00000389040 C9orf92A6NGG3 77 aa5.5□□□□□ -1.53
VPS53-202ENST00000389040 UBR4Q5T4S7 5183 aa5.49□□□□□ -1.53
VPS53-202ENST00000389040 IGKV2D-30A0A075B6S6 120 aa5.49□□□□□ -1.53
VPS53-202ENST00000389040 KRTAP23-1A1A580 65 aa5.48□□□□□ -1.53
VPS53-202ENST00000389040 Q75L30 129 aa5.47□□□□□ -1.53
VPS53-202ENST00000389040 DMAC1Q96GE9 116 aa5.47□□□□□ -1.53
VPS53-202ENST00000389040 ACYP2P14621 99 aa5.46□□□□□ -1.53
VPS53-202ENST00000389040 A8MUU9 505 aa5.46□□□□□ -1.54
VPS53-202ENST00000389040 PSPHP1O15172 72 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms