RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 KRTAP10-1P60331 282 aa6.69□□□□□ -1.34
HIF3A-205ENST00000377670 Q8N9P0 234 aaPredicted RBP6.69□□□□□ -1.34
HIF3A-205ENST00000377670 Q5VV11 94 aa6.66□□□□□ -1.34
HIF3A-205ENST00000377670 LINC01558Q9Y6Z2 57 aa6.66□□□□□ -1.34
HIF3A-205ENST00000377670 KRTAP10-2P60368 255 aa6.66□□□□□ -1.34
HIF3A-205ENST00000377670 HRES1P13985 223 aa6.65□□□□□ -1.34
HIF3A-205ENST00000377670 LUZP6Q538Z0 58 aa6.64□□□□□ -1.35
HIF3A-205ENST00000377670 CSAG1Q6PB30 78 aa6.63□□□□□ -1.35
HIF3A-205ENST00000377670 A0A1B0GU33 70 aa6.63□□□□□ -1.35
HIF3A-205ENST00000377670 FBN1P35555 2871 aaKnown RBP6.63□□□□□ -1.35
HIF3A-205ENST00000377670 SPINK7P58062 85 aa6.61□□□□□ -1.35
HIF3A-205ENST00000377670 TENM1Q9UKZ4 2725 aa6.61□□□□□ -1.35
HIF3A-205ENST00000377670 MMP24-AS1A0A0U1RRL7 71 aa6.6□□□□□ -1.35
HIF3A-205ENST00000377670 OTOGQ6ZRI0 2925 aa6.59□□□□□ -1.35
HIF3A-205ENST00000377670 BSNQ9UPA5 3926 aa6.57□□□□□ -1.36
HIF3A-205ENST00000377670 S4R3F8 94 aa6.57□□□□□ -1.36
HIF3A-205ENST00000377670 KRTAP26-1Q6PEX3 210 aa6.57□□□□□ -1.36
HIF3A-205ENST00000377670 ZCCHC13Q8WW36 166 aaKnown RBP6.55□□□□□ -1.36
HIF3A-205ENST00000377670 PKD1L1Q8TDX9 2849 aa6.54□□□□□ -1.36
HIF3A-205ENST00000377670 VWFP04275 2813 aa6.54□□□□□ -1.36
HIF3A-205ENST00000377670 TENM3Q9P273 2699 aa6.53□□□□□ -1.36
HIF3A-205ENST00000377670 Q6ZR54 194 aa6.52□□□□□ -1.37
HIF3A-205ENST00000377670 PDZD2O15018 2839 aa6.52□□□□□ -1.37
HIF3A-205ENST00000377670 PANO1I0J062 215 aa6.51□□□□□ -1.37
HIF3A-205ENST00000377670 Q5W150 140 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 PLAC4Q8WY50 150 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 SPRR1AP35321 89 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 DMAC1Q96GE9 116 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 LINC00472Q9H8W2 130 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 R4GN34 69 aa6.48□□□□□ -1.37
HIF3A-205ENST00000377670 LINC00483Q53H64 154 aa6.47□□□□□ -1.37
HIF3A-205ENST00000377670 DMBT1Q9UGM3 2413 aaPredicted RBP6.42□□□□□ -1.38
HIF3A-205ENST00000377670 A0A0A0MQY5 61 aa6.41□□□□□ -1.38
HIF3A-205ENST00000377670 VPS13CQ709C8 3753 aa6.39□□□□□ -1.39
HIF3A-205ENST00000377670 SPRR1BP22528 89 aa6.38□□□□□ -1.39
HIF3A-205ENST00000377670 KRTAP11-1Q8IUC1 163 aa6.37□□□□□ -1.39
HIF3A-205ENST00000377670 ROMO1P60602 79 aa6.37□□□□□ -1.39
HIF3A-205ENST00000377670 FLG2Q5D862 2391 aaPredicted RBP6.37□□□□□ -1.39
HIF3A-205ENST00000377670 TENM2Q9NT68 2774 aa6.34□□□□□ -1.39
HIF3A-205ENST00000377670 RPL37P61927 97 aaKnown RBP6.33□□□□□ -1.4
HIF3A-205ENST00000377670 H1FX-AS1Q4G0G2 97 aa6.32□□□□□ -1.4
HIF3A-205ENST00000377670 TRRAPQ9Y4A5 3859 aa6.32□□□□□ -1.4
HIF3A-205ENST00000377670 M0QZ58 72 aa6.32□□□□□ -1.4
HIF3A-205ENST00000377670 KRTAP4-16G5E9R7 235 aaPredicted RBP6.32□□□□□ -1.4
HIF3A-205ENST00000377670 KRTAP7-1Q8IUC3 87 aa6.31□□□□□ -1.4
HIF3A-205ENST00000377670 KRTAP29-1A8MX34 341 aaPredicted RBP6.29□□□□□ -1.4
HIF3A-205ENST00000377670 ASB16-AS1Q495Z4 193 aa6.29□□□□□ -1.4
HIF3A-205ENST00000377670 TGP01266 2768 aa6.29□□□□□ -1.4
HIF3A-205ENST00000377670 SPATA8Q6RVD6 105 aa6.29□□□□□ -1.4
HIF3A-205ENST00000377670 Q6ZRN7 208 aaPredicted RBP6.28□□□□□ -1.4
HIF3A-205ENST00000377670 A6NN06 94 aa6.28□□□□□ -1.4
HIF3A-205ENST00000377670 A0A087X002 238 aa6.27□□□□□ -1.41
HIF3A-205ENST00000377670 C20orf166-AS1Q96NR2 134 aa6.21□□□□□ -1.41
HIF3A-205ENST00000377670 ADM2Q7Z4H4 148 aa6.21□□□□□ -1.42
HIF3A-205ENST00000377670 A8MU10 97 aa6.2□□□□□ -1.42
HIF3A-205ENST00000377670 RPS29P62273 56 aaKnown RBP6.2□□□□□ -1.42
HIF3A-205ENST00000377670 KRTAP16-1A8MUX0 517 aa6.19□□□□□ -1.42
HIF3A-205ENST00000377670 KRTAP25-1Q3LHN0 102 aa6.19□□□□□ -1.42
HIF3A-205ENST00000377670 NOTCH2NLQ7Z3S9 236 aa6.19□□□□□ -1.42
HIF3A-205ENST00000377670 ZNF469Q96JG9 3925 aaPredicted RBP6.18□□□□□ -1.42
HIF3A-205ENST00000377670 ANK3Q12955 4377 aaKnown RBP6.16□□□□□ -1.42
HIF3A-205ENST00000377670 SRRM2Q9UQ35 2752 aaKnown RBP6.15□□□□□ -1.43
HIF3A-205ENST00000377670 NDUFAF8A1L188 74 aa6.08□□□□□ -1.44
HIF3A-205ENST00000377670 KRTAP13-2Q52LG2 175 aa6.08□□□□□ -1.44
HIF3A-205ENST00000377670 KRTAP13-1Q8IUC0 172 aa6.05□□□□□ -1.44
HIF3A-205ENST00000377670 A8MUU9 505 aa6.04□□□□□ -1.44
HIF3A-205ENST00000377670 FBN3Q75N90 2809 aa5.98□□□□□ -1.45
HIF3A-205ENST00000377670 COL7A1Q02388 2944 aa5.94□□□□□ -1.46
HIF3A-205ENST00000377670 A0A1B0GVY2 172 aa5.93□□□□□ -1.46
HIF3A-205ENST00000377670 CSMD3Q7Z407 3707 aa5.92□□□□□ -1.46
HIF3A-205ENST00000377670 KRTAP10-10P60014 251 aa5.9□□□□□ -1.47
HIF3A-205ENST00000377670 TPRXLQ17RH7 258 aa5.87□□□□□ -1.47
HIF3A-205ENST00000377670 XP32Q5T750 250 aa5.86□□□□□ -1.47
HIF3A-205ENST00000377670 KRTAP1-4P0C5Y4 121 aa5.84□□□□□ -1.47
HIF3A-205ENST00000377670 KRTAP10-8P60410 259 aa5.84□□□□□ -1.47
HIF3A-205ENST00000377670 AKAP9Q99996 3911 aa5.82□□□□□ -1.48
HIF3A-205ENST00000377670 TNP1P09430 55 aa5.81□□□□□ -1.48
HIF3A-205ENST00000377670 C10orf95Q9H7T3 257 aa5.81□□□□□ -1.48
HIF3A-205ENST00000377670 MEGF8Q7Z7M0 2845 aa5.8□□□□□ -1.48
HIF3A-205ENST00000377670 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
HIF3A-205ENST00000377670 H0YAA0 97 aa5.73□□□□□ -1.49
HIF3A-205ENST00000377670 HUWE1Q7Z6Z7 4374 aaKnown RBP5.66□□□□□ -1.5
HIF3A-205ENST00000377670 KRTAP13-3Q3SY46 172 aa5.65□□□□□ -1.5
HIF3A-205ENST00000377670 P0C880 135 aa5.64□□□□□ -1.51
HIF3A-205ENST00000377670 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
HIF3A-205ENST00000377670 DNHD1Q96M86 4753 aa5.5□□□□□ -1.53
HIF3A-205ENST00000377670 DNAH9Q9NYC9 4486 aa5.47□□□□□ -1.53
HIF3A-205ENST00000377670 DNAH10Q8IVF4 4471 aa5.41□□□□□ -1.54
HIF3A-205ENST00000377670 PLECQ15149 4684 aaKnown RBP5.41□□□□□ -1.54
HIF3A-205ENST00000377670 KRTAP12-2P59991 146 aa5.36□□□□□ -1.55
HIF3A-205ENST00000377670 PRKDCP78527 4128 aaKnown RBP5.31□□□□□ -1.56
HIF3A-205ENST00000377670 DNAH11Q96DT5 4516 aa5.3□□□□□ -1.56
HIF3A-205ENST00000377670 DNAH1Q9P2D7 4330 aa5.29□□□□□ -1.56
HIF3A-205ENST00000377670 ANK2Q01484 3957 aa5.28□□□□□ -1.56
HIF3A-205ENST00000377670 KRTAP4-5Q9BYR2 181 aa5.28□□□□□ -1.56
HIF3A-205ENST00000377670 STARD9Q9P2P6 4700 aa5.27□□□□□ -1.57
HIF3A-205ENST00000377670 DNAH5Q8TE73 4624 aa5.24□□□□□ -1.57
HIF3A-205ENST00000377670 KRTAP3-1Q9BYR8 98 aa5.23□□□□□ -1.57
HIF3A-205ENST00000377670 KRTAP12-1P59990 96 aa5.21□□□□□ -1.58
HIF3A-205ENST00000377670 KMT2AQ03164 3969 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms