RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 HRES1P13985 223 aa9.75□□□□□ -0.85
SDC4-201ENST00000372733 IGLV5-52A0A0A0MRZ9 124 aa9.73□□□□□ -0.85
SDC4-201ENST00000372733 A0A087WTM6 91 aa9.72□□□□□ -0.85
SDC4-201ENST00000372733 LINC01558Q9Y6Z2 57 aa9.72□□□□□ -0.85
SDC4-201ENST00000372733 SPINK6Q6UWN8 80 aa9.71□□□□□ -0.86
SDC4-201ENST00000372733 PLAC8Q9NZF1 115 aa9.71□□□□□ -0.86
SDC4-201ENST00000372733 HECTD4Q9Y4D8 3996 aa9.71□□□□□ -0.86
SDC4-201ENST00000372733 VPS13DQ5THJ4 4388 aa9.7□□□□□ -0.86
SDC4-201ENST00000372733 STARD9Q9P2P6 4700 aa9.7□□□□□ -0.86
SDC4-201ENST00000372733 RTL8CO15255 209 aa9.69□□□□□ -0.86
SDC4-201ENST00000372733 NUPR2A6NF83 97 aa9.69□□□□□ -0.86
SDC4-201ENST00000372733 ZNF861PO60384 105 aa9.69□□□□□ -0.86
SDC4-201ENST00000372733 Q5W150 140 aa9.68□□□□□ -0.86
SDC4-201ENST00000372733 ATP11AUNQ6ZP68 121 aa9.67□□□□□ -0.86
SDC4-201ENST00000372733 CDC42SE1Q9NRR8 79 aa9.67□□□□□ -0.86
SDC4-201ENST00000372733 SPINK7P58062 85 aa9.64□□□□□ -0.87
SDC4-201ENST00000372733 DNAH17Q9UFH2 4485 aa9.64□□□□□ -0.87
SDC4-201ENST00000372733 KRTAP13-3Q3SY46 172 aa9.63□□□□□ -0.87
SDC4-201ENST00000372733 KTN1-AS1Q86SY8 53 aa9.63□□□□□ -0.87
SDC4-201ENST00000372733 PRR26Q8N8Z3 221 aa9.62□□□□□ -0.87
SDC4-201ENST00000372733 CIRBP-AS1Q8TBR5 109 aa9.62□□□□□ -0.87
SDC4-201ENST00000372733 DNAH2Q9P225 4427 aa9.61□□□□□ -0.87
SDC4-201ENST00000372733 A6NN06 94 aa9.61□□□□□ -0.87
SDC4-201ENST00000372733 DNHD1Q96M86 4753 aa9.59□□□□□ -0.87
SDC4-201ENST00000372733 KMT2AQ03164 3969 aa9.57□□□□□ -0.88
SDC4-201ENST00000372733 FBN3Q75N90 2809 aa9.56□□□□□ -0.88
SDC4-201ENST00000372733 PRKDCP78527 4128 aaKnown RBP9.56□□□□□ -0.88
SDC4-201ENST00000372733 IGLV7-43P04211 117 aa9.55□□□□□ -0.88
SDC4-201ENST00000372733 MEGF8Q7Z7M0 2845 aa9.53□□□□□ -0.88
SDC4-201ENST00000372733 RETNLBQ9BQ08 111 aa9.52□□□□□ -0.89
SDC4-201ENST00000372733 TGP01266 2768 aa9.49□□□□□ -0.89
SDC4-201ENST00000372733 ALMS1Q8TCU4 4167 aa9.49□□□□□ -0.89
SDC4-201ENST00000372733 ACYP2P14621 99 aa9.49□□□□□ -0.89
SDC4-201ENST00000372733 C8orf87E5RJ46 101 aa9.49□□□□□ -0.89
SDC4-201ENST00000372733 RBM12B-AS1Q9P1G2 102 aa9.48□□□□□ -0.89
SDC4-201ENST00000372733 DMAC1Q96GE9 116 aa9.46□□□□□ -0.89
SDC4-201ENST00000372733 DNAH11Q96DT5 4516 aa9.45□□□□□ -0.9
SDC4-201ENST00000372733 LINC00313P59037 77 aa9.44□□□□□ -0.9
SDC4-201ENST00000372733 C7orf65Q6ZTY9 151 aa9.44□□□□□ -0.9
SDC4-201ENST00000372733 SSBP3-AS1Q7Z2R9 100 aa9.44□□□□□ -0.9
SDC4-201ENST00000372733 DNAH6Q9C0G6 4158 aa9.43□□□□□ -0.9
SDC4-201ENST00000372733 C1orf134Q5TEV5 83 aa9.42□□□□□ -0.9
SDC4-201ENST00000372733 FAM229AH3BQW9 127 aa9.42□□□□□ -0.9
SDC4-201ENST00000372733 IGKV2-30P06310 120 aa9.39□□□□□ -0.91
SDC4-201ENST00000372733 KRTAP13-2Q52LG2 175 aa9.38□□□□□ -0.91
SDC4-201ENST00000372733 DNAH5Q8TE73 4624 aa9.38□□□□□ -0.91
SDC4-201ENST00000372733 KRTAP10-2P60368 255 aa9.35□□□□□ -0.91
SDC4-201ENST00000372733 A0A1B0GU69 56 aa9.34□□□□□ -0.91
SDC4-201ENST00000372733 KRTAP16-1A8MUX0 517 aa9.34□□□□□ -0.91
SDC4-201ENST00000372733 LY6G6CO95867 125 aa9.31□□□□□ -0.92
SDC4-201ENST00000372733 IGKV2D-30A0A075B6S6 120 aa9.31□□□□□ -0.92
SDC4-201ENST00000372733 LRP1BQ9NZR2 4599 aa9.3□□□□□ -0.92
SDC4-201ENST00000372733 PRAC1Q96KF2 57 aa9.26□□□□□ -0.93
SDC4-201ENST00000372733 SPATA8Q6RVD6 105 aa9.23□□□□□ -0.93
SDC4-201ENST00000372733 ADM2Q7Z4H4 148 aa9.23□□□□□ -0.93
SDC4-201ENST00000372733 KRTAP1-4P0C5Y4 121 aa9.22□□□□□ -0.93
SDC4-201ENST00000372733 KRTAP10-1P60331 282 aa9.22□□□□□ -0.93
SDC4-201ENST00000372733 MIR22HGQ0VDD5 57 aa9.2□□□□□ -0.94
SDC4-201ENST00000372733 UQCR11O14957 56 aa9.18□□□□□ -0.94
SDC4-201ENST00000372733 Q6ZSA8 131 aa9.18□□□□□ -0.94
SDC4-201ENST00000372733 PKD1P98161 4303 aa9.16□□□□□ -0.94
SDC4-201ENST00000372733 VPS13BQ7Z7G8 4022 aa9.14□□□□□ -0.95
SDC4-201ENST00000372733 PLA2G1BP04054 148 aaKnown RBP9.13□□□□□ -0.95
SDC4-201ENST00000372733 SPINK1P00995 79 aa9.13□□□□□ -0.95
SDC4-201ENST00000372733 Q8N1X5 172 aa9.12□□□□□ -0.95
SDC4-201ENST00000372733 C4orf48Q5BLP8 95 aa9.11□□□□□ -0.95
SDC4-201ENST00000372733 FAT2Q9NYQ8 4349 aa9.11□□□□□ -0.95
SDC4-201ENST00000372733 TYMSOSQ8TAI1 123 aa9.1□□□□□ -0.95
SDC4-201ENST00000372733 HYDINQ4G0P3 5121 aa9.07□□□□□ -0.96
SDC4-201ENST00000372733 LINC00304Q8N9R0 145 aa8.97□□□□□ -0.97
SDC4-201ENST00000372733 LINC01554Q52M75 96 aa8.95□□□□□ -0.98
SDC4-201ENST00000372733 CSAG1Q6PB30 78 aa8.93□□□□□ -0.98
SDC4-201ENST00000372733 C9orf92A6NGG3 77 aa8.91□□□□□ -0.98
SDC4-201ENST00000372733 PKHD1P08F94 4074 aa8.91□□□□□ -0.98
SDC4-201ENST00000372733 H0YAA0 97 aa8.89□□□□□ -0.99
SDC4-201ENST00000372733 SACSQ9NZJ4 4579 aa8.88□□□□□ -0.99
SDC4-201ENST00000372733 RPS29P62273 56 aaKnown RBP8.86□□□□□ -0.99
SDC4-201ENST00000372733 KRTAP3-1Q9BYR8 98 aa8.85□□□□□ -0.99
SDC4-201ENST00000372733 A8MUU9 505 aa8.83□□□□□ -1
SDC4-201ENST00000372733 C20orf166-AS1Q96NR2 134 aa8.83□□□□□ -1
SDC4-201ENST00000372733 SMR3BP02814 79 aaPredicted RBP8.82□□□□□ -1
SDC4-201ENST00000372733 DYNC1H1Q14204 4646 aaKnown RBP8.78□□□□□ -1
SDC4-201ENST00000372733 A0A1B0GU33 70 aa8.77□□□□□ -1.01
SDC4-201ENST00000372733 FAT1Q14517 4588 aa8.77□□□□□ -1.01
SDC4-201ENST00000372733 PKHD1L1Q86WI1 4243 aa8.76□□□□□ -1.01
SDC4-201ENST00000372733 H1FX-AS1Q4G0G2 97 aa8.74□□□□□ -1.01
SDC4-201ENST00000372733 APOBP04114 4563 aaKnown RBP8.7□□□□□ -1.02
SDC4-201ENST00000372733 KRTAP21-3Q3LHN1 58 aa8.69□□□□□ -1.02
SDC4-201ENST00000372733 KRTAP10-4P60372 401 aaPredicted RBP8.64□□□□□ -1.03
SDC4-201ENST00000372733 KMT2CQ8NEZ4 4911 aaKnown RBP8.64□□□□□ -1.03
SDC4-201ENST00000372733 COX6B2Q6YFQ2 88 aa8.63□□□□□ -1.03
SDC4-201ENST00000372733 KRTAP25-1Q3LHN0 102 aa8.62□□□□□ -1.03
SDC4-201ENST00000372733 FLG2Q5D862 2391 aaPredicted RBP8.57□□□□□ -1.04
SDC4-201ENST00000372733 CRIPTQ9P021 101 aa8.55□□□□□ -1.04
SDC4-201ENST00000372733 A0A1B0GVY2 172 aa8.52□□□□□ -1.05
SDC4-201ENST00000372733 K7ERS5 55 aa8.51□□□□□ -1.05
SDC4-201ENST00000372733 RYR2Q92736 4967 aa8.51□□□□□ -1.05
SDC4-201ENST00000372733 FAT3Q8TDW7 4589 aa8.49□□□□□ -1.05
SDC4-201ENST00000372733 KRTAP3-3Q9BYR6 98 aa8.46□□□□□ -1.06
SDC4-201ENST00000372733 KRTAP10-6P60371 365 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms