RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DCHS2Q6V1P9 2916 aa6.84□□□□□ -1.32
PTPRF-203ENST00000372407 ASPMQ8IZT6 3477 aa6.83□□□□□ -1.32
PTPRF-203ENST00000372407 FBN2P35556 2912 aa6.81□□□□□ -1.32
PTPRF-203ENST00000372407 KRTAP29-1A8MX34 341 aaPredicted RBP6.8□□□□□ -1.32
PTPRF-203ENST00000372407 LINC00483Q53H64 154 aa6.79□□□□□ -1.32
PTPRF-203ENST00000372407 S4R3F8 94 aa6.79□□□□□ -1.32
PTPRF-203ENST00000372407 Q6ZR54 194 aa6.78□□□□□ -1.32
PTPRF-203ENST00000372407 NF1P21359 2839 aa6.77□□□□□ -1.33
PTPRF-203ENST00000372407 PDZD2O15018 2839 aa6.75□□□□□ -1.33
PTPRF-203ENST00000372407 KRTAP10-1P60331 282 aa6.75□□□□□ -1.33
PTPRF-203ENST00000372407 PANO1I0J062 215 aa6.74□□□□□ -1.33
PTPRF-203ENST00000372407 R4GN34 69 aa6.74□□□□□ -1.33
PTPRF-203ENST00000372407 MXRA5Q9NR99 2828 aa6.74□□□□□ -1.33
PTPRF-203ENST00000372407 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
PTPRF-203ENST00000372407 KRTAP10-2P60368 255 aa6.73□□□□□ -1.33
PTPRF-203ENST00000372407 M0R2T5 61 aa6.71□□□□□ -1.33
PTPRF-203ENST00000372407 WDFY3Q8IZQ1 3526 aa6.7□□□□□ -1.34
PTPRF-203ENST00000372407 OTOGQ6ZRI0 2925 aa6.69□□□□□ -1.34
PTPRF-203ENST00000372407 SEC61BP60468 96 aaKnown RBP6.68□□□□□ -1.34
PTPRF-203ENST00000372407 SMG1Q96Q15 3661 aaKnown RBP6.67□□□□□ -1.34
PTPRF-203ENST00000372407 H1FX-AS1Q4G0G2 97 aa6.66□□□□□ -1.34
PTPRF-203ENST00000372407 A0A087X002 238 aa6.65□□□□□ -1.34
PTPRF-203ENST00000372407 ROMO1P60602 79 aa6.65□□□□□ -1.34
PTPRF-203ENST00000372407 Q5VSD8 79 aa6.64□□□□□ -1.35
PTPRF-203ENST00000372407 NOTCH2NLQ7Z3S9 236 aa6.64□□□□□ -1.35
PTPRF-203ENST00000372407 H3BS24 57 aa6.64□□□□□ -1.35
PTPRF-203ENST00000372407 ASB16-AS1Q495Z4 193 aa6.64□□□□□ -1.35
PTPRF-203ENST00000372407 ZFHX4Q86UP3 3567 aa6.62□□□□□ -1.35
PTPRF-203ENST00000372407 KRTAP11-1Q8IUC1 163 aa6.6□□□□□ -1.35
PTPRF-203ENST00000372407 SPATA8Q6RVD6 105 aa6.59□□□□□ -1.35
PTPRF-203ENST00000372407 A0A0A0MQY5 61 aa6.59□□□□□ -1.35
PTPRF-203ENST00000372407 M0QZ58 72 aa6.59□□□□□ -1.35
PTPRF-203ENST00000372407 KRTAP7-1Q8IUC3 87 aa6.58□□□□□ -1.36
PTPRF-203ENST00000372407 NBPF19A0A087WUL8 3843 aa6.57□□□□□ -1.36
PTPRF-203ENST00000372407 Q6ZRN7 208 aaPredicted RBP6.56□□□□□ -1.36
PTPRF-203ENST00000372407 TENM3Q9P273 2699 aa6.54□□□□□ -1.36
PTPRF-203ENST00000372407 ADM2Q7Z4H4 148 aa6.51□□□□□ -1.37
PTPRF-203ENST00000372407 RPS29P62273 56 aaKnown RBP6.51□□□□□ -1.37
PTPRF-203ENST00000372407 ZFHX3Q15911 3703 aa6.5□□□□□ -1.37
PTPRF-203ENST00000372407 KRTAP13-1Q8IUC0 172 aa6.5□□□□□ -1.37
PTPRF-203ENST00000372407 A6NN06 94 aa6.48□□□□□ -1.37
PTPRF-203ENST00000372407 CELSR1Q9NYQ6 3014 aa6.48□□□□□ -1.37
PTPRF-203ENST00000372407 TENM1Q9UKZ4 2725 aa6.48□□□□□ -1.37
PTPRF-203ENST00000372407 KRTAP13-2Q52LG2 175 aa6.45□□□□□ -1.38
PTPRF-203ENST00000372407 A8MU10 97 aa6.41□□□□□ -1.38
PTPRF-203ENST00000372407 KRTAP25-1Q3LHN0 102 aa6.39□□□□□ -1.39
PTPRF-203ENST00000372407 FBN1P35555 2871 aaKnown RBP6.38□□□□□ -1.39
PTPRF-203ENST00000372407 TENM2Q9NT68 2774 aa6.38□□□□□ -1.39
PTPRF-203ENST00000372407 CSMD1Q96PZ7 3565 aa6.38□□□□□ -1.39
PTPRF-203ENST00000372407 PLAC4Q8WY50 150 aa6.38□□□□□ -1.39
PTPRF-203ENST00000372407 BSNQ9UPA5 3926 aa6.35□□□□□ -1.39
PTPRF-203ENST00000372407 A8MUU9 505 aa6.35□□□□□ -1.39
PTPRF-203ENST00000372407 SPENQ96T58 3664 aaKnown RBP6.34□□□□□ -1.4
PTPRF-203ENST00000372407 PKD1L1Q8TDX9 2849 aa6.33□□□□□ -1.4
PTPRF-203ENST00000372407 CSMD2Q7Z408 3487 aa6.33□□□□□ -1.4
PTPRF-203ENST00000372407 VWFP04275 2813 aa6.3□□□□□ -1.4
PTPRF-203ENST00000372407 TGP01266 2768 aa6.26□□□□□ -1.41
PTPRF-203ENST00000372407 KRTAP16-1A8MUX0 517 aa6.26□□□□□ -1.41
PTPRF-203ENST00000372407 C20orf166-AS1Q96NR2 134 aa6.25□□□□□ -1.41
PTPRF-203ENST00000372407 ANK3Q12955 4377 aaKnown RBP6.21□□□□□ -1.41
PTPRF-203ENST00000372407 NDUFAF8A1L188 74 aa6.19□□□□□ -1.42
PTPRF-203ENST00000372407 KRTAP1-4P0C5Y4 121 aa6.15□□□□□ -1.42
PTPRF-203ENST00000372407 FBN3Q75N90 2809 aa6.15□□□□□ -1.42
PTPRF-203ENST00000372407 TNP1P09430 55 aa6.14□□□□□ -1.43
PTPRF-203ENST00000372407 SVEP1Q4LDE5 3571 aa6.1□□□□□ -1.43
PTPRF-203ENST00000372407 A0A1B0GVY2 172 aa6.05□□□□□ -1.44
PTPRF-203ENST00000372407 XP32Q5T750 250 aa6.05□□□□□ -1.44
PTPRF-203ENST00000372407 H0YAA0 97 aa6.03□□□□□ -1.44
PTPRF-203ENST00000372407 TRRAPQ9Y4A5 3859 aa6.03□□□□□ -1.44
PTPRF-203ENST00000372407 PP632Q6XCG6 107 aa6.03□□□□□ -1.44
PTPRF-203ENST00000372407 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
PTPRF-203ENST00000372407 SRRM2Q9UQ35 2752 aaKnown RBP5.97□□□□□ -1.45
PTPRF-203ENST00000372407 P0C880 135 aa5.93□□□□□ -1.46
PTPRF-203ENST00000372407 TPRXLQ17RH7 258 aa5.93□□□□□ -1.46
PTPRF-203ENST00000372407 ZNF469Q96JG9 3925 aaPredicted RBP5.92□□□□□ -1.46
PTPRF-203ENST00000372407 AKAP9Q99996 3911 aa5.92□□□□□ -1.46
PTPRF-203ENST00000372407 KRTAP10-8P60410 259 aa5.91□□□□□ -1.46
PTPRF-203ENST00000372407 KRTAP13-3Q3SY46 172 aa5.87□□□□□ -1.47
PTPRF-203ENST00000372407 MEGF8Q7Z7M0 2845 aa5.86□□□□□ -1.47
PTPRF-203ENST00000372407 CUBNO60494 3623 aa5.86□□□□□ -1.47
PTPRF-203ENST00000372407 VPS13CQ709C8 3753 aa5.83□□□□□ -1.48
PTPRF-203ENST00000372407 COL7A1Q02388 2944 aa5.81□□□□□ -1.48
PTPRF-203ENST00000372407 KRTAP10-10P60014 251 aa5.75□□□□□ -1.49
PTPRF-203ENST00000372407 DNHD1Q96M86 4753 aa5.71□□□□□ -1.5
PTPRF-203ENST00000372407 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
PTPRF-203ENST00000372407 HUWE1Q7Z6Z7 4374 aaKnown RBP5.66□□□□□ -1.5
PTPRF-203ENST00000372407 KRTAP12-2P59991 146 aa5.62□□□□□ -1.51
PTPRF-203ENST00000372407 KRTAP12-1P59990 96 aa5.58□□□□□ -1.52
PTPRF-203ENST00000372407 KRTAP3-1Q9BYR8 98 aa5.57□□□□□ -1.52
PTPRF-203ENST00000372407 DNAH9Q9NYC9 4486 aa5.57□□□□□ -1.52
PTPRF-203ENST00000372407 KRTAP13-4Q3LI77 160 aa5.55□□□□□ -1.52
PTPRF-203ENST00000372407 KRTAP4-5Q9BYR2 181 aa5.53□□□□□ -1.52
PTPRF-203ENST00000372407 ALMS1Q8TCU4 4167 aa5.5□□□□□ -1.53
PTPRF-203ENST00000372407 MT1HL1P0DM35 61 aa5.48□□□□□ -1.53
PTPRF-203ENST00000372407 ANK2Q01484 3957 aa5.45□□□□□ -1.54
PTPRF-203ENST00000372407 KRTAP10-6P60371 365 aaPredicted RBP5.44□□□□□ -1.54
PTPRF-203ENST00000372407 KRTAP10-4P60372 401 aaPredicted RBP5.44□□□□□ -1.54
PTPRF-203ENST00000372407 PRKDCP78527 4128 aaKnown RBP5.39□□□□□ -1.55
PTPRF-203ENST00000372407 PLECQ15149 4684 aaKnown RBP5.34□□□□□ -1.55
PTPRF-203ENST00000372407 DNAH5Q8TE73 4624 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms