RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 A6NN06 94 aa2.29□□□□□ -2.04
USH2A-202ENST00000366942 TENM2Q9NT68 2774 aa2.29□□□□□ -2.04
USH2A-202ENST00000366942 CR1P17927 2039 aa2.28□□□□□ -2.04
USH2A-202ENST00000366942 AKAP13Q12802 2813 aa2.28□□□□□ -2.05
USH2A-202ENST00000366942 RELNP78509 3460 aa2.27□□□□□ -2.05
USH2A-202ENST00000366942 SPATA8Q6RVD6 105 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 DMXL1Q9Y485 3027 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 A8MU10 97 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 XP32Q5T750 250 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 A0A1B0GVY2 172 aa2.25□□□□□ -2.05
USH2A-202ENST00000366942 A0A096LNJ9 63 aa2.25□□□□□ -2.05
USH2A-202ENST00000366942 CELSR3Q9NYQ7 3312 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 LINC00472Q9H8W2 130 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 FREM2Q5SZK8 3169 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 LAMA5O15230 3695 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 ITPR1Q14643 2758 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 VPS13CQ709C8 3753 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 AKAP9Q99996 3911 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 ROMO1P60602 79 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 PRO0628Q9UI54 55 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 SMCPP49901 116 aaPredicted RBP2.22□□□□□ -2.05
USH2A-202ENST00000366942 A0A0C4DFX4 3053 aa2.21□□□□□ -2.05
USH2A-202ENST00000366942 URB1-AS1Q96HZ7 61 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 LOC400499M0QZD8 3231 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 NBPF19A0A087WUL8 3843 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 TENM1Q9UKZ4 2725 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP26-1Q6PEX3 210 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 CSMD2Q7Z408 3487 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP4-16G5E9R7 235 aaPredicted RBP2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP13-2Q52LG2 175 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 WDR87Q6ZQQ6 2873 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP13-3Q3SY46 172 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 ATMQ13315 3056 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP11-1Q8IUC1 163 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 KALRNO60229 2985 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 BOD1L1Q8NFC6 3051 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 DMXL2Q8TDJ6 3036 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 ZZEF1O43149 2961 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 LINC00310P59036 64 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP25-1Q3LHN0 102 aa2.17□□□□□ -2.06
USH2A-202ENST00000366942 NBEAQ8NFP9 2946 aa2.16□□□□□ -2.06
USH2A-202ENST00000366942 ADGRG4Q8IZF6 3080 aa2.16□□□□□ -2.06
USH2A-202ENST00000366942 CSMD1Q96PZ7 3565 aa2.15□□□□□ -2.06
USH2A-202ENST00000366942 ZNF469Q96JG9 3925 aaPredicted RBP2.15□□□□□ -2.07
USH2A-202ENST00000366942 LINC01558Q9Y6Z2 57 aa2.13□□□□□ -2.07
USH2A-202ENST00000366942 KRTAP13-1Q8IUC0 172 aa2.11□□□□□ -2.07
USH2A-202ENST00000366942 DCHS2Q6V1P9 2916 aa2.11□□□□□ -2.07
USH2A-202ENST00000366942 KRTAP1-4P0C5Y4 121 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 MGAQ8IWI9 3026 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 SVEP1Q4LDE5 3571 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 DNAH3Q8TD57 4116 aa2.09□□□□□ -2.07
USH2A-202ENST00000366942 OCR1Q9BZK8 76 aa2.09□□□□□ -2.07
USH2A-202ENST00000366942 ANK3Q12955 4377 aaKnown RBP2.09□□□□□ -2.07
USH2A-202ENST00000366942 CMYA5Q8N3K9 4069 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 CUBNO60494 3623 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 PRO0461Q9UI25 63 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 ANK2Q01484 3957 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 H0YAA0 97 aa2.07□□□□□ -2.08
USH2A-202ENST00000366942 C10orf95Q9H7T3 257 aa2.06□□□□□ -2.08
USH2A-202ENST00000366942 CELSR2Q9HCU4 2923 aa2.05□□□□□ -2.08
USH2A-202ENST00000366942 CRYBG3Q68DQ2 2970 aa2.05□□□□□ -2.08
USH2A-202ENST00000366942 NIPBLQ6KC79 2804 aaeCLIP2.05□□□□□ -2.08
USH2A-202ENST00000366942 ASH1LQ9NR48 2969 aaKnown RBP2.05□□□□□ -2.08
USH2A-202ENST00000366942 LORP23490 312 aaPredicted RBP2.04□□□□□ -2.08
USH2A-202ENST00000366942 DSPP15924 2871 aaKnown RBP2.04□□□□□ -2.08
USH2A-202ENST00000366942 HRNRQ86YZ3 2850 aaPredicted RBP2.02□□□□□ -2.09
USH2A-202ENST00000366942 CELSR1Q9NYQ6 3014 aa2.02□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.01□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP8-1Q8IUC2 63 aa2.01□□□□□ -2.09
USH2A-202ENST00000366942 PRRC2CQ9Y520 2896 aaKnown RBP2.01□□□□□ -2.09
USH2A-202ENST00000366942 CYSTM1Q9H1C7 97 aa2.01□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP10-7P60409 375 aaPredicted RBP2□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP16-1A8MUX0 517 aa2□□□□□ -2.09
USH2A-202ENST00000366942 FBN2P35556 2912 aa1.99□□□□□ -2.09
USH2A-202ENST00000366942 PRAC1Q96KF2 57 aa1.98□□□□□ -2.09
USH2A-202ENST00000366942 OTOGQ6ZRI0 2925 aa1.98□□□□□ -2.09
USH2A-202ENST00000366942 PDZD2O15018 2839 aa1.96□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP10-6P60371 365 aaPredicted RBP1.96□□□□□ -2.1
USH2A-202ENST00000366942 TRRAPQ9Y4A5 3859 aa1.96□□□□□ -2.1
USH2A-202ENST00000366942 CSMD3Q7Z407 3707 aa1.96□□□□□ -2.1
USH2A-202ENST00000366942 LYSTQ99698 3801 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP23-1A1A580 65 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 LCE2BO14633 110 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 DYNC2H1Q8NCM8 4307 aaKnown RBP1.95□□□□□ -2.1
USH2A-202ENST00000366942 NF1P21359 2839 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP15-1Q3LI76 137 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 LRBAP50851 2863 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 SRRM2Q9UQ35 2752 aaKnown RBP1.93□□□□□ -2.1
USH2A-202ENST00000366942 DNAH7Q8WXX0 4024 aa1.93□□□□□ -2.1
USH2A-202ENST00000366942 PRKDCP78527 4128 aaKnown RBP1.93□□□□□ -2.1
USH2A-202ENST00000366942 MT1HL1P0DM35 61 aa1.93□□□□□ -2.1
USH2A-202ENST00000366942 DNAH1Q9P2D7 4330 aa1.92□□□□□ -2.1
USH2A-202ENST00000366942 PKD1L1Q8TDX9 2849 aa1.92□□□□□ -2.1
USH2A-202ENST00000366942 LCE2CQ5TA81 110 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP7-1Q8IUC3 87 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP4-8Q9BYQ9 185 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP10-12P60413 245 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 COL12A1Q99715 3063 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 NDUFAF8A1L188 74 aa1.9□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms