RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 LINC00472Q9H8W2 130 aa7.91□□□□□ -1.14
SQSTM1-201ENST00000360718 C1orf64Q8NEQ6 169 aa7.9□□□□□ -1.15
SQSTM1-201ENST00000360718 FAT1Q14517 4588 aa7.89□□□□□ -1.15
SQSTM1-201ENST00000360718 SMR3BP02814 79 aaPredicted RBP7.89□□□□□ -1.15
SQSTM1-201ENST00000360718 LINC00483Q53H64 154 aa7.89□□□□□ -1.15
SQSTM1-201ENST00000360718 LINC00208Q96KT6 92 aa7.89□□□□□ -1.15
SQSTM1-201ENST00000360718 TRAV22A0A0B4J277 110 aa7.88□□□□□ -1.15
SQSTM1-201ENST00000360718 EPPK1P58107 5090 aaKnown RBP7.88□□□□□ -1.15
SQSTM1-201ENST00000360718 H0Y9P7 68 aa7.87□□□□□ -1.15
SQSTM1-201ENST00000360718 SPANXA2-OT1Q8N9U9 137 aa7.85□□□□□ -1.15
SQSTM1-201ENST00000360718 IGLV9-49A0A0B4J1Y8 123 aa7.84□□□□□ -1.15
SQSTM1-201ENST00000360718 HSPG2P98160 4391 aa7.83□□□□□ -1.16
SQSTM1-201ENST00000360718 ANAPC11Q9NYG5 84 aa7.83□□□□□ -1.16
SQSTM1-201ENST00000360718 PRR4Q16378 134 aa7.82□□□□□ -1.16
SQSTM1-201ENST00000360718 KRTAP10-4P60372 401 aaPredicted RBP7.81□□□□□ -1.16
SQSTM1-201ENST00000360718 MMP24-AS1A0A0U1RRL7 71 aa7.81□□□□□ -1.16
SQSTM1-201ENST00000360718 SPINK6Q6UWN8 80 aa7.81□□□□□ -1.16
SQSTM1-201ENST00000360718 CDK2AP2O75956 126 aa7.8□□□□□ -1.16
SQSTM1-201ENST00000360718 MOBPQ13875 183 aa7.79□□□□□ -1.16
SQSTM1-201ENST00000360718 TP53AIP1Q9HCN2 124 aa7.79□□□□□ -1.16
SQSTM1-201ENST00000360718 KIAA1109Q2LD37 5005 aa7.79□□□□□ -1.16
SQSTM1-201ENST00000360718 KRTAP17-1Q9BYP8 105 aa7.78□□□□□ -1.16
SQSTM1-201ENST00000360718 FAM229AH3BQW9 127 aa7.78□□□□□ -1.16
SQSTM1-201ENST00000360718 RYR1P21817 5038 aa7.77□□□□□ -1.16
SQSTM1-201ENST00000360718 PLA2G1BP04054 148 aaKnown RBP7.77□□□□□ -1.17
SQSTM1-201ENST00000360718 Q96NJ1 140 aa7.75□□□□□ -1.17
SQSTM1-201ENST00000360718 KRTAP1-4P0C5Y4 121 aa7.74□□□□□ -1.17
SQSTM1-201ENST00000360718 PMAIP1Q13794 54 aa7.74□□□□□ -1.17
SQSTM1-201ENST00000360718 ASB16-AS1Q495Z4 193 aa7.74□□□□□ -1.17
SQSTM1-201ENST00000360718 C4orf48Q5BLP8 95 aa7.74□□□□□ -1.17
SQSTM1-201ENST00000360718 SSBP3-AS1Q7Z2R9 100 aa7.74□□□□□ -1.17
SQSTM1-201ENST00000360718 C8orf17Q9NRJ1 99 aa7.73□□□□□ -1.17
SQSTM1-201ENST00000360718 A0A087X002 238 aa7.72□□□□□ -1.17
SQSTM1-201ENST00000360718 PSPHP1O15172 72 aa7.72□□□□□ -1.17
SQSTM1-201ENST00000360718 A0A1B0GVX0 72 aa7.71□□□□□ -1.17
SQSTM1-201ENST00000360718 IGLV7-46A0A075B6I9 117 aa7.7□□□□□ -1.18
SQSTM1-201ENST00000360718 LIMD2Q9BT23 127 aa7.7□□□□□ -1.18
SQSTM1-201ENST00000360718 IGHV6-1A0A0B4J1U7 121 aa7.69□□□□□ -1.18
SQSTM1-201ENST00000360718 Q5VSD8 79 aa7.69□□□□□ -1.18
SQSTM1-201ENST00000360718 KRTAP13-2Q52LG2 175 aa7.68□□□□□ -1.18
SQSTM1-201ENST00000360718 NDUFS5O43920 106 aa7.67□□□□□ -1.18
SQSTM1-201ENST00000360718 CD164Q04900 197 aa7.67□□□□□ -1.18
SQSTM1-201ENST00000360718 A8MUN3 132 aa7.67□□□□□ -1.18
SQSTM1-201ENST00000360718 MRPL34Q9BQ48 92 aaKnown RBP7.67□□□□□ -1.18
SQSTM1-201ENST00000360718 PKHD1L1Q86WI1 4243 aa7.66□□□□□ -1.18
SQSTM1-201ENST00000360718 TYMSOSQ8TAI1 123 aa7.66□□□□□ -1.18
SQSTM1-201ENST00000360718 Q5VV11 94 aa7.65□□□□□ -1.18
SQSTM1-201ENST00000360718 Q8N9P0 234 aaPredicted RBP7.65□□□□□ -1.18
SQSTM1-201ENST00000360718 PCOTHQ58A44 107 aa7.63□□□□□ -1.19
SQSTM1-201ENST00000360718 COA5Q86WW8 74 aa7.63□□□□□ -1.19
SQSTM1-201ENST00000360718 PRR26Q8N8Z3 221 aa7.63□□□□□ -1.19
SQSTM1-201ENST00000360718 Q8N1X5 172 aa7.61□□□□□ -1.19
SQSTM1-201ENST00000360718 LRP1Q07954 4544 aaKnown RBP7.6□□□□□ -1.19
SQSTM1-201ENST00000360718 CHKB-CPT1BH3BT56 60 aa7.58□□□□□ -1.2
SQSTM1-201ENST00000360718 LOC101927531A0A1B0GV80 90 aa7.58□□□□□ -1.2
SQSTM1-201ENST00000360718 FLG2Q5D862 2391 aaPredicted RBP7.58□□□□□ -1.2
SQSTM1-201ENST00000360718 Q75L30 129 aa7.57□□□□□ -1.2
SQSTM1-201ENST00000360718 PRR15LQ9BU68 103 aa7.57□□□□□ -1.2
SQSTM1-201ENST00000360718 SPINK1P00995 79 aa7.57□□□□□ -1.2
SQSTM1-201ENST00000360718 SPAG11AQ6PDA7 123 aa7.57□□□□□ -1.2
SQSTM1-201ENST00000360718 LINC00304Q8N9R0 145 aa7.57□□□□□ -1.2
SQSTM1-201ENST00000360718 C8orf87E5RJ46 101 aa7.55□□□□□ -1.2
SQSTM1-201ENST00000360718 KRTAP4-5Q9BYR2 181 aa7.55□□□□□ -1.2
SQSTM1-201ENST00000360718 NOTCH2NLQ7Z3S9 236 aa7.55□□□□□ -1.2
SQSTM1-201ENST00000360718 BIRC6Q9NR09 4857 aa7.54□□□□□ -1.2
SQSTM1-201ENST00000360718 ATP11AUNQ6ZP68 121 aa7.53□□□□□ -1.2
SQSTM1-201ENST00000360718 MYCBP2O75592 4640 aa7.53□□□□□ -1.2
SQSTM1-201ENST00000360718 FAT3Q8TDW7 4589 aa7.51□□□□□ -1.21
SQSTM1-201ENST00000360718 RPS29P62273 56 aaKnown RBP7.5□□□□□ -1.21
SQSTM1-201ENST00000360718 TNXBP22105 4242 aa7.5□□□□□ -1.21
SQSTM1-201ENST00000360718 LINC01558Q9Y6Z2 57 aa7.5□□□□□ -1.21
SQSTM1-201ENST00000360718 HRES1P13985 223 aa7.49□□□□□ -1.21
SQSTM1-201ENST00000360718 A6NED7 52 aa7.48□□□□□ -1.21
SQSTM1-201ENST00000360718 A8MU10 97 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 KRTAP13-3Q3SY46 172 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 Q5W150 140 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 KTN1-AS1Q86SY8 53 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 CDC42SE1Q9NRR8 79 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 LINC00313P59037 77 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 LCA10Q71F78 164 aa7.47□□□□□ -1.21
SQSTM1-201ENST00000360718 HERC2O95714 4834 aa7.46□□□□□ -1.22
SQSTM1-201ENST00000360718 KRTAP10-8P60410 259 aa7.45□□□□□ -1.22
SQSTM1-201ENST00000360718 RBM12B-AS1Q9P1G2 102 aa7.45□□□□□ -1.22
SQSTM1-201ENST00000360718 ACYP2P14621 99 aa7.44□□□□□ -1.22
SQSTM1-201ENST00000360718 SPTSSBQ8NFR3 76 aa7.43□□□□□ -1.22
SQSTM1-201ENST00000360718 ABCA13Q86UQ4 5058 aa7.43□□□□□ -1.22
SQSTM1-201ENST00000360718 MT1HL1P0DM35 61 aa7.41□□□□□ -1.22
SQSTM1-201ENST00000360718 A6NN06 94 aa7.39□□□□□ -1.23
SQSTM1-201ENST00000360718 DMBT1Q9UGM3 2413 aaPredicted RBP7.39□□□□□ -1.23
SQSTM1-201ENST00000360718 DMAC1Q96GE9 116 aa7.36□□□□□ -1.23
SQSTM1-201ENST00000360718 IGKV2-30P06310 120 aa7.35□□□□□ -1.23
SQSTM1-201ENST00000360718 RETNLBQ9BQ08 111 aa7.33□□□□□ -1.24
SQSTM1-201ENST00000360718 C7orf65Q6ZTY9 151 aa7.31□□□□□ -1.24
SQSTM1-201ENST00000360718 KRTAP16-1A8MUX0 517 aa7.3□□□□□ -1.24
SQSTM1-201ENST00000360718 SPINK7P58062 85 aa7.29□□□□□ -1.24
SQSTM1-201ENST00000360718 J3QL48 77 aa7.24□□□□□ -1.25
SQSTM1-201ENST00000360718 PCLOQ9Y6V0 5065 aa7.23□□□□□ -1.25
SQSTM1-201ENST00000360718 IGKV2D-30A0A075B6S6 120 aa7.23□□□□□ -1.25
SQSTM1-201ENST00000360718 A0A1B0GU69 56 aa7.23□□□□□ -1.25
SQSTM1-201ENST00000360718 C9orf92A6NGG3 77 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms