RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 VPS13CQ709C8 3753 aa7.32□□□□□ -1.24
SMAD9-201ENST00000350148 CSMD2Q7Z408 3487 aa7.32□□□□□ -1.24
SMAD9-201ENST00000350148 A0A1B0GU33 70 aa7.31□□□□□ -1.24
SMAD9-201ENST00000350148 A6NN06 94 aa7.31□□□□□ -1.24
SMAD9-201ENST00000350148 A8MU10 97 aa7.31□□□□□ -1.24
SMAD9-201ENST00000350148 PANO1I0J062 215 aa7.31□□□□□ -1.24
SMAD9-201ENST00000350148 ZANQ9Y493 2812 aa7.31□□□□□ -1.24
SMAD9-201ENST00000350148 MMP24-AS1A0A0U1RRL7 71 aa7.3□□□□□ -1.24
SMAD9-201ENST00000350148 NBEAL2Q6ZNJ1 2754 aa7.3□□□□□ -1.24
SMAD9-201ENST00000350148 KRTAP7-1Q8IUC3 87 aa7.28□□□□□ -1.24
SMAD9-201ENST00000350148 FBN2P35556 2912 aa7.27□□□□□ -1.25
SMAD9-201ENST00000350148 PDZD2O15018 2839 aa7.26□□□□□ -1.25
SMAD9-201ENST00000350148 HRES1P13985 223 aa7.26□□□□□ -1.25
SMAD9-201ENST00000350148 NIPBLQ6KC79 2804 aaeCLIP7.26□□□□□ -1.25
SMAD9-201ENST00000350148 KRTAP13-1Q8IUC0 172 aa7.25□□□□□ -1.25
SMAD9-201ENST00000350148 CRYBG3Q68DQ2 2970 aa7.25□□□□□ -1.25
SMAD9-201ENST00000350148 C9orf92A6NGG3 77 aa7.23□□□□□ -1.25
SMAD9-201ENST00000350148 CELSR2Q9HCU4 2923 aa7.23□□□□□ -1.25
SMAD9-201ENST00000350148 RPS29P62273 56 aaKnown RBP7.22□□□□□ -1.25
SMAD9-201ENST00000350148 Q8N1X5 172 aa7.22□□□□□ -1.25
SMAD9-201ENST00000350148 SEC61BP60468 96 aaKnown RBP7.22□□□□□ -1.25
SMAD9-201ENST00000350148 CAMK2N1Q7Z7J9 78 aa7.2□□□□□ -1.26
SMAD9-201ENST00000350148 NDUFAF8A1L188 74 aa7.18□□□□□ -1.26
SMAD9-201ENST00000350148 Q5VSD8 79 aa7.18□□□□□ -1.26
SMAD9-201ENST00000350148 KRTAP11-1Q8IUC1 163 aa7.18□□□□□ -1.26
SMAD9-201ENST00000350148 ROMO1P60602 79 aa7.17□□□□□ -1.26
SMAD9-201ENST00000350148 TENM4Q6N022 2769 aa7.16□□□□□ -1.26
SMAD9-201ENST00000350148 ZCCHC13Q8WW36 166 aaKnown RBP7.15□□□□□ -1.26
SMAD9-201ENST00000350148 KRTAP25-1Q3LHN0 102 aa7.14□□□□□ -1.27
SMAD9-201ENST00000350148 Q6ZSA8 131 aa7.12□□□□□ -1.27
SMAD9-201ENST00000350148 MXRA5Q9NR99 2828 aa7.12□□□□□ -1.27
SMAD9-201ENST00000350148 KRTAP29-1A8MX34 341 aaPredicted RBP7.12□□□□□ -1.27
SMAD9-201ENST00000350148 ADM2Q7Z4H4 148 aa7.12□□□□□ -1.27
SMAD9-201ENST00000350148 NBEAL1Q6ZS30 2694 aa7.11□□□□□ -1.27
SMAD9-201ENST00000350148 A0A087X002 238 aa7.08□□□□□ -1.28
SMAD9-201ENST00000350148 SPATA8Q6RVD6 105 aa7.07□□□□□ -1.28
SMAD9-201ENST00000350148 Q5W150 140 aa7.06□□□□□ -1.28
SMAD9-201ENST00000350148 ANK3Q12955 4377 aaKnown RBP7.03□□□□□ -1.28
SMAD9-201ENST00000350148 RPL37P61927 97 aaKnown RBP7.02□□□□□ -1.29
SMAD9-201ENST00000350148 NF1P21359 2839 aa7.02□□□□□ -1.29
SMAD9-201ENST00000350148 KRTAP13-2Q52LG2 175 aa7.01□□□□□ -1.29
SMAD9-201ENST00000350148 COX6B2Q6YFQ2 88 aa7□□□□□ -1.29
SMAD9-201ENST00000350148 OTOGQ6ZRI0 2925 aa6.98□□□□□ -1.29
SMAD9-201ENST00000350148 STAB2Q8WWQ8 2551 aa6.97□□□□□ -1.29
SMAD9-201ENST00000350148 NBPF19A0A087WUL8 3843 aa6.96□□□□□ -1.29
SMAD9-201ENST00000350148 AKAP9Q99996 3911 aa6.94□□□□□ -1.3
SMAD9-201ENST00000350148 H1FX-AS1Q4G0G2 97 aa6.94□□□□□ -1.3
SMAD9-201ENST00000350148 C20orf166-AS1Q96NR2 134 aa6.88□□□□□ -1.31
SMAD9-201ENST00000350148 KRTAP1-4P0C5Y4 121 aa6.87□□□□□ -1.31
SMAD9-201ENST00000350148 NOTCH2NLQ7Z3S9 236 aa6.86□□□□□ -1.31
SMAD9-201ENST00000350148 FLG2Q5D862 2391 aaPredicted RBP6.85□□□□□ -1.31
SMAD9-201ENST00000350148 A8MUU9 505 aa6.84□□□□□ -1.31
SMAD9-201ENST00000350148 S4R3F8 94 aa6.83□□□□□ -1.32
SMAD9-201ENST00000350148 A0A1B0GVY2 172 aa6.8□□□□□ -1.32
SMAD9-201ENST00000350148 TENM1Q9UKZ4 2725 aa6.79□□□□□ -1.32
SMAD9-201ENST00000350148 TENM3Q9P273 2699 aa6.79□□□□□ -1.32
SMAD9-201ENST00000350148 PLAC4Q8WY50 150 aa6.78□□□□□ -1.32
SMAD9-201ENST00000350148 R4GN34 69 aa6.68□□□□□ -1.34
SMAD9-201ENST00000350148 ZNF469Q96JG9 3925 aaPredicted RBP6.66□□□□□ -1.34
SMAD9-201ENST00000350148 FBN1P35555 2871 aaKnown RBP6.65□□□□□ -1.35
SMAD9-201ENST00000350148 VWFP04275 2813 aa6.63□□□□□ -1.35
SMAD9-201ENST00000350148 KRTAP10-8P60410 259 aa6.58□□□□□ -1.36
SMAD9-201ENST00000350148 TPRXLQ17RH7 258 aa6.58□□□□□ -1.36
SMAD9-201ENST00000350148 CSMD3Q7Z407 3707 aa6.58□□□□□ -1.36
SMAD9-201ENST00000350148 M0QZ58 72 aa6.57□□□□□ -1.36
SMAD9-201ENST00000350148 M0R2T5 61 aa6.56□□□□□ -1.36
SMAD9-201ENST00000350148 TRRAPQ9Y4A5 3859 aa6.56□□□□□ -1.36
SMAD9-201ENST00000350148 XP32Q5T750 250 aa6.55□□□□□ -1.36
SMAD9-201ENST00000350148 DMBT1Q9UGM3 2413 aaPredicted RBP6.54□□□□□ -1.36
SMAD9-201ENST00000350148 TENM2Q9NT68 2774 aa6.53□□□□□ -1.36
SMAD9-201ENST00000350148 C10orf95Q9H7T3 257 aa6.5□□□□□ -1.37
SMAD9-201ENST00000350148 PKD1L1Q8TDX9 2849 aa6.49□□□□□ -1.37
SMAD9-201ENST00000350148 KRTAP13-3Q3SY46 172 aa6.48□□□□□ -1.37
SMAD9-201ENST00000350148 HUWE1Q7Z6Z7 4374 aaKnown RBP6.48□□□□□ -1.37
SMAD9-201ENST00000350148 P0C880 135 aa6.43□□□□□ -1.38
SMAD9-201ENST00000350148 SRRM2Q9UQ35 2752 aaKnown RBP6.42□□□□□ -1.38
SMAD9-201ENST00000350148 ALMS1Q8TCU4 4167 aa6.4□□□□□ -1.39
SMAD9-201ENST00000350148 TGP01266 2768 aa6.36□□□□□ -1.39
SMAD9-201ENST00000350148 PP632Q6XCG6 107 aa6.35□□□□□ -1.39
SMAD9-201ENST00000350148 DNAH9Q9NYC9 4486 aa6.31□□□□□ -1.4
SMAD9-201ENST00000350148 H0YAA0 97 aa6.3□□□□□ -1.4
SMAD9-201ENST00000350148 FBN3Q75N90 2809 aa6.26□□□□□ -1.41
SMAD9-201ENST00000350148 KRTAP10-4P60372 401 aaPredicted RBP6.25□□□□□ -1.41
SMAD9-201ENST00000350148 DNAH10Q8IVF4 4471 aa6.25□□□□□ -1.41
SMAD9-201ENST00000350148 TNP1P09430 55 aa6.21□□□□□ -1.41
SMAD9-201ENST00000350148 COL7A1Q02388 2944 aa6.17□□□□□ -1.42
SMAD9-201ENST00000350148 MT1HL1P0DM35 61 aa6.16□□□□□ -1.42
SMAD9-201ENST00000350148 MEGF8Q7Z7M0 2845 aa6.15□□□□□ -1.43
SMAD9-201ENST00000350148 LYSTQ99698 3801 aa6.11□□□□□ -1.43
SMAD9-201ENST00000350148 VPS13DQ5THJ4 4388 aa6.1□□□□□ -1.43
SMAD9-201ENST00000350148 ANK2Q01484 3957 aa6.07□□□□□ -1.44
SMAD9-201ENST00000350148 FRAS1Q86XX4 4008 aa6.05□□□□□ -1.44
SMAD9-201ENST00000350148 DNAH3Q8TD57 4116 aa6.04□□□□□ -1.44
SMAD9-201ENST00000350148 PLECQ15149 4684 aaKnown RBP6.02□□□□□ -1.45
SMAD9-201ENST00000350148 DNAH17Q9UFH2 4485 aa6.01□□□□□ -1.45
SMAD9-201ENST00000350148 DNAH1Q9P2D7 4330 aa6.01□□□□□ -1.45
SMAD9-201ENST00000350148 KRTAP3-1Q9BYR8 98 aa6.01□□□□□ -1.45
SMAD9-201ENST00000350148 DNAH11Q96DT5 4516 aa5.94□□□□□ -1.46
SMAD9-201ENST00000350148 DNAH6Q9C0G6 4158 aa5.93□□□□□ -1.46
SMAD9-201ENST00000350148 CMYA5Q8N3K9 4069 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms