RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 KLKP1Q107X0 134 aa4.05□□□□□ -1.76
TRIM55-203ENST00000350034 ASB16-AS1Q495Z4 193 aa4.05□□□□□ -1.76
TRIM55-203ENST00000350034 HRCT1Q6UXD1 115 aa4.05□□□□□ -1.76
TRIM55-203ENST00000350034 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
TRIM55-203ENST00000350034 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
TRIM55-203ENST00000350034 PKHD1P08F94 4074 aa4.04□□□□□ -1.76
TRIM55-203ENST00000350034 Q5XG85 94 aa4.04□□□□□ -1.76
TRIM55-203ENST00000350034 C20orf197Q8N268 126 aa4.04□□□□□ -1.76
TRIM55-203ENST00000350034 MMP24-AS1A0A0U1RRL7 71 aa4.03□□□□□ -1.76
TRIM55-203ENST00000350034 KRTAP10-4P60372 401 aaPredicted RBP4.03□□□□□ -1.76
TRIM55-203ENST00000350034 LCE3BQ5TA77 95 aa4.03□□□□□ -1.76
TRIM55-203ENST00000350034 SPINK6Q6UWN8 80 aa4.03□□□□□ -1.76
TRIM55-203ENST00000350034 A0A0U1RQV1 116 aa4.02□□□□□ -1.77
TRIM55-203ENST00000350034 NDUFB1O75438 58 aa4.02□□□□□ -1.77
TRIM55-203ENST00000350034 CASC2Q6XLA1 102 aa4.02□□□□□ -1.77
TRIM55-203ENST00000350034 HSPG2P98160 4391 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 A0A1B0GVX0 72 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 H7BZZ5 65 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 TMEM258P61165 79 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 WFDC13Q8IUB5 93 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 TMEM254Q8TBM7 123 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 PKD1P98161 4303 aa4.01□□□□□ -1.77
TRIM55-203ENST00000350034 ZCCHC13Q8WW36 166 aaKnown RBP4□□□□□ -1.77
TRIM55-203ENST00000350034 C8orf17Q9NRJ1 99 aa4□□□□□ -1.77
TRIM55-203ENST00000350034 SRRM2Q9UQ35 2752 aaKnown RBP4□□□□□ -1.77
TRIM55-203ENST00000350034 LRP1BQ9NZR2 4599 aa4□□□□□ -1.77
TRIM55-203ENST00000350034 NDUFC1O43677 76 aa3.99□□□□□ -1.77
TRIM55-203ENST00000350034 PLA2G1BP04054 148 aaKnown RBP3.99□□□□□ -1.77
TRIM55-203ENST00000350034 C5orf47Q569G3 176 aa3.99□□□□□ -1.77
TRIM55-203ENST00000350034 SNURFQ9Y675 71 aa3.99□□□□□ -1.77
TRIM55-203ENST00000350034 hDV103S1A0JD37 113 aa3.98□□□□□ -1.77
TRIM55-203ENST00000350034 CDK2AP2O75956 126 aa3.98□□□□□ -1.77
TRIM55-203ENST00000350034 SMR3BP02814 79 aaPredicted RBP3.98□□□□□ -1.77
TRIM55-203ENST00000350034 DYNC1H1Q14204 4646 aaKnown RBP3.97□□□□□ -1.77
TRIM55-203ENST00000350034 KRTAP4-8A0A0G2JLE6 195 aa3.97□□□□□ -1.77
TRIM55-203ENST00000350034 C1orf195Q5TG92 126 aa3.97□□□□□ -1.77
TRIM55-203ENST00000350034 NOTCH2NLQ7Z3S9 236 aa3.97□□□□□ -1.77
TRIM55-203ENST00000350034 TYMSOSQ8TAI1 123 aa3.97□□□□□ -1.77
TRIM55-203ENST00000350034 IGHV6-1A0A0B4J1U7 121 aa3.96□□□□□ -1.78
TRIM55-203ENST00000350034 C8orf87E5RJ46 101 aa3.96□□□□□ -1.78
TRIM55-203ENST00000350034 SPINK1P00995 79 aa3.96□□□□□ -1.78
TRIM55-203ENST00000350034 RPS29P62273 56 aaKnown RBP3.96□□□□□ -1.78
TRIM55-203ENST00000350034 C4orf48Q5BLP8 95 aa3.96□□□□□ -1.78
TRIM55-203ENST00000350034 MYCBP2O75592 4640 aa3.95□□□□□ -1.78
TRIM55-203ENST00000350034 H3BPC8 53 aa3.95□□□□□ -1.78
TRIM55-203ENST00000350034 RPS28P62857 69 aaKnown RBP3.95□□□□□ -1.78
TRIM55-203ENST00000350034 PRR26Q8N8Z3 221 aa3.95□□□□□ -1.78
TRIM55-203ENST00000350034 MRPL34Q9BQ48 92 aaKnown RBP3.95□□□□□ -1.78
TRIM55-203ENST00000350034 LIMD2Q9BT23 127 aa3.95□□□□□ -1.78
TRIM55-203ENST00000350034 TP53AIP1Q9HCN2 124 aa3.95□□□□□ -1.78
TRIM55-203ENST00000350034 FSIP2Q5CZC0 6907 aa3.94□□□□□ -1.78
TRIM55-203ENST00000350034 FAM236DA0A1B0GTK5 79 aa3.94□□□□□ -1.78
TRIM55-203ENST00000350034 FAM236CP0DP71 79 aa3.94□□□□□ -1.78
TRIM55-203ENST00000350034 SPAG11AQ6PDA7 123 aa3.94□□□□□ -1.78
TRIM55-203ENST00000350034 KRTAP19-1Q8IUB9 90 aa3.94□□□□□ -1.78
TRIM55-203ENST00000350034 H0Y9P7 68 aa3.93□□□□□ -1.78
TRIM55-203ENST00000350034 MP68P56378 58 aa3.93□□□□□ -1.78
TRIM55-203ENST00000350034 LINC00304Q8N9R0 145 aa3.93□□□□□ -1.78
TRIM55-203ENST00000350034 SVIPQ8NHG7 77 aa3.93□□□□□ -1.78
TRIM55-203ENST00000350034 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
TRIM55-203ENST00000350034 KRTAP9-7A8MTY7 169 aa3.92□□□□□ -1.78
TRIM55-203ENST00000350034 ATP5EP56381 51 aaPredicted RBP3.92□□□□□ -1.78
TRIM55-203ENST00000350034 TRAV22A0A0B4J277 110 aa3.91□□□□□ -1.78
TRIM55-203ENST00000350034 KRTAP16-1A8MUX0 517 aa3.91□□□□□ -1.78
TRIM55-203ENST00000350034 KRTAP13-3Q3SY46 172 aa3.91□□□□□ -1.78
TRIM55-203ENST00000350034 LINC00208Q96KT6 92 aa3.91□□□□□ -1.78
TRIM55-203ENST00000350034 APOBP04114 4563 aaKnown RBP3.9□□□□□ -1.78
TRIM55-203ENST00000350034 LINC00313P59037 77 aa3.9□□□□□ -1.79
TRIM55-203ENST00000350034 Q8N9P0 234 aaPredicted RBP3.9□□□□□ -1.79
TRIM55-203ENST00000350034 FAM229AH3BQW9 127 aa3.89□□□□□ -1.79
TRIM55-203ENST00000350034 OXTP01178 125 aa3.89□□□□□ -1.79
TRIM55-203ENST00000350034 C1orf64Q8NEQ6 169 aa3.89□□□□□ -1.79
TRIM55-203ENST00000350034 SERP1Q9Y6X1 66 aa3.89□□□□□ -1.79
TRIM55-203ENST00000350034 VPS13BQ7Z7G8 4022 aa3.88□□□□□ -1.79
TRIM55-203ENST00000350034 CYP4F30PQ9H0H9 118 aa3.88□□□□□ -1.79
TRIM55-203ENST00000350034 FLG2Q5D862 2391 aaPredicted RBP3.87□□□□□ -1.79
TRIM55-203ENST00000350034 NDUFS5O43920 106 aa3.87□□□□□ -1.79
TRIM55-203ENST00000350034 Q5W150 140 aa3.87□□□□□ -1.79
TRIM55-203ENST00000350034 Q8N1X5 172 aa3.87□□□□□ -1.79
TRIM55-203ENST00000350034 SPANXA2-OT1Q8N9U9 137 aa3.87□□□□□ -1.79
TRIM55-203ENST00000350034 KRTAP10-8P60410 259 aa3.86□□□□□ -1.79
TRIM55-203ENST00000350034 Q5VSD8 79 aa3.86□□□□□ -1.79
TRIM55-203ENST00000350034 LOC101927531A0A1B0GV80 90 aa3.84□□□□□ -1.79
TRIM55-203ENST00000350034 KRTAP4-7Q9BYR0 210 aa3.84□□□□□ -1.79
TRIM55-203ENST00000350034 FAT1Q14517 4588 aa3.83□□□□□ -1.8
TRIM55-203ENST00000350034 IGLV7-46A0A075B6I9 117 aa3.83□□□□□ -1.8
TRIM55-203ENST00000350034 PKHD1L1Q86WI1 4243 aa3.81□□□□□ -1.8
TRIM55-203ENST00000350034 IGKV2-30P06310 120 aa3.81□□□□□ -1.8
TRIM55-203ENST00000350034 SMIM26A0A096LP01 95 aa3.8□□□□□ -1.8
TRIM55-203ENST00000350034 PCOTHQ58A44 107 aa3.8□□□□□ -1.8
TRIM55-203ENST00000350034 C20orf166-AS1Q96NR2 134 aa3.8□□□□□ -1.8
TRIM55-203ENST00000350034 A8MUU9 505 aa3.79□□□□□ -1.8
TRIM55-203ENST00000350034 MT1HL1P0DM35 61 aa3.79□□□□□ -1.8
TRIM55-203ENST00000350034 PRR4Q16378 134 aa3.79□□□□□ -1.8
TRIM55-203ENST00000350034 LCE1DQ5T752 114 aa3.78□□□□□ -1.8
TRIM55-203ENST00000350034 FP248Q71RG6 208 aaPredicted RBP3.78□□□□□ -1.8
TRIM55-203ENST00000350034 RETNLBQ9BQ08 111 aa3.77□□□□□ -1.81
TRIM55-203ENST00000350034 LRP2P98164 4655 aa3.75□□□□□ -1.81
TRIM55-203ENST00000350034 HRES1P13985 223 aa3.75□□□□□ -1.81
TRIM55-203ENST00000350034 C9orf92A6NGG3 77 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms