RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 VPS13DQ5THJ4 4388 aa12.89□□□□□ -0.35
TRIM3-201ENST00000345851 NBDYA0A0U1RRE5 68 aa12.88□□□□□ -0.35
TRIM3-201ENST00000345851 A0A087X002 238 aa12.87□□□□□ -0.35
TRIM3-201ENST00000345851 NOTCH2NLQ7Z3S9 236 aa12.87□□□□□ -0.35
TRIM3-201ENST00000345851 A0A1B0GVX0 72 aa12.85□□□□□ -0.35
TRIM3-201ENST00000345851 DNAH2Q9P225 4427 aa12.84□□□□□ -0.35
TRIM3-201ENST00000345851 MRPL34Q9BQ48 92 aaKnown RBP12.83□□□□□ -0.35
TRIM3-201ENST00000345851 CDK2AP2O75956 126 aa12.83□□□□□ -0.36
TRIM3-201ENST00000345851 PANO1I0J062 215 aa12.83□□□□□ -0.36
TRIM3-201ENST00000345851 PRAC1Q96KF2 57 aa12.82□□□□□ -0.36
TRIM3-201ENST00000345851 LINC00313P59037 77 aa12.78□□□□□ -0.36
TRIM3-201ENST00000345851 KRTAP13-1Q8IUC0 172 aa12.78□□□□□ -0.36
TRIM3-201ENST00000345851 Q6ZRN7 208 aaPredicted RBP12.77□□□□□ -0.37
TRIM3-201ENST00000345851 ANAPC11Q9NYG5 84 aa12.75□□□□□ -0.37
TRIM3-201ENST00000345851 Q5W150 140 aa12.75□□□□□ -0.37
TRIM3-201ENST00000345851 ADM2Q7Z4H4 148 aa12.73□□□□□ -0.37
TRIM3-201ENST00000345851 SPINK6Q6UWN8 80 aa12.72□□□□□ -0.37
TRIM3-201ENST00000345851 C14orf177Q52M58 125 aa12.71□□□□□ -0.37
TRIM3-201ENST00000345851 HECTD4Q9Y4D8 3996 aa12.7□□□□□ -0.38
TRIM3-201ENST00000345851 LY6G6CO95867 125 aa12.68□□□□□ -0.38
TRIM3-201ENST00000345851 C8orf87E5RJ46 101 aa12.67□□□□□ -0.38
TRIM3-201ENST00000345851 ACYP2P14621 99 aa12.64□□□□□ -0.39
TRIM3-201ENST00000345851 WWC2-AS2Q96NR7 200 aa12.64□□□□□ -0.39
TRIM3-201ENST00000345851 C4orf48Q5BLP8 95 aa12.63□□□□□ -0.39
TRIM3-201ENST00000345851 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.63□□□□□ -0.39
TRIM3-201ENST00000345851 HYDINQ4G0P3 5121 aa12.63□□□□□ -0.39
TRIM3-201ENST00000345851 A0A087WTM6 91 aa12.62□□□□□ -0.39
TRIM3-201ENST00000345851 FRAS1Q86XX4 4008 aa12.61□□□□□ -0.39
TRIM3-201ENST00000345851 LINC00483Q53H64 154 aa12.6□□□□□ -0.39
TRIM3-201ENST00000345851 DNAH6Q9C0G6 4158 aa12.58□□□□□ -0.39
TRIM3-201ENST00000345851 KRTAP13-3Q3SY46 172 aa12.58□□□□□ -0.4
TRIM3-201ENST00000345851 RETNLBQ9BQ08 111 aa12.57□□□□□ -0.4
TRIM3-201ENST00000345851 A0A1B0GU69 56 aa12.56□□□□□ -0.4
TRIM3-201ENST00000345851 DNAH17Q9UFH2 4485 aa12.55□□□□□ -0.4
TRIM3-201ENST00000345851 ALMS1Q8TCU4 4167 aa12.53□□□□□ -0.4
TRIM3-201ENST00000345851 RTL8CO15255 209 aa12.52□□□□□ -0.4
TRIM3-201ENST00000345851 ZNF706Q9Y5V0 76 aaPredicted RBP12.52□□□□□ -0.4
TRIM3-201ENST00000345851 C1orf134Q5TEV5 83 aa12.52□□□□□ -0.41
TRIM3-201ENST00000345851 SPACA4Q8TDM5 124 aa12.52□□□□□ -0.41
TRIM3-201ENST00000345851 PSORS1C2Q9UIG4 136 aa12.51□□□□□ -0.41
TRIM3-201ENST00000345851 DNAH8Q96JB1 4490 aa12.51□□□□□ -0.41
TRIM3-201ENST00000345851 PLA2G1BP04054 148 aaKnown RBP12.5□□□□□ -0.41
TRIM3-201ENST00000345851 DMAC1Q96GE9 116 aa12.5□□□□□ -0.41
TRIM3-201ENST00000345851 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
TRIM3-201ENST00000345851 LINC01554Q52M75 96 aa12.46□□□□□ -0.41
TRIM3-201ENST00000345851 DNAH11Q96DT5 4516 aa12.46□□□□□ -0.41
TRIM3-201ENST00000345851 DNAH5Q8TE73 4624 aa12.45□□□□□ -0.42
TRIM3-201ENST00000345851 IGLV5-52A0A0A0MRZ9 124 aa12.44□□□□□ -0.42
TRIM3-201ENST00000345851 SPATA8Q6RVD6 105 aa12.44□□□□□ -0.42
TRIM3-201ENST00000345851 H3BS24 57 aa12.42□□□□□ -0.42
TRIM3-201ENST00000345851 MIR22HGQ0VDD5 57 aa12.42□□□□□ -0.42
TRIM3-201ENST00000345851 KRTAP21-3Q3LHN1 58 aa12.41□□□□□ -0.42
TRIM3-201ENST00000345851 ZNF861PO60384 105 aa12.4□□□□□ -0.42
TRIM3-201ENST00000345851 KRTAP10-2P60368 255 aa12.39□□□□□ -0.43
TRIM3-201ENST00000345851 UQCR11O14957 56 aa12.37□□□□□ -0.43
TRIM3-201ENST00000345851 FAT2Q9NYQ8 4349 aa12.34□□□□□ -0.43
TRIM3-201ENST00000345851 FAM229AH3BQW9 127 aa12.32□□□□□ -0.44
TRIM3-201ENST00000345851 IGKV2-30P06310 120 aa12.3□□□□□ -0.44
TRIM3-201ENST00000345851 CSAG1Q6PB30 78 aa12.3□□□□□ -0.44
TRIM3-201ENST00000345851 SACSQ9NZJ4 4579 aa12.29□□□□□ -0.44
TRIM3-201ENST00000345851 PKD1P98161 4303 aa12.28□□□□□ -0.44
TRIM3-201ENST00000345851 IGKV2D-30A0A075B6S6 120 aa12.26□□□□□ -0.45
TRIM3-201ENST00000345851 LRP1BQ9NZR2 4599 aa12.24□□□□□ -0.45
TRIM3-201ENST00000345851 PKHD1P08F94 4074 aa12.23□□□□□ -0.45
TRIM3-201ENST00000345851 IGLV7-43P04211 117 aa12.18□□□□□ -0.46
TRIM3-201ENST00000345851 SPINK1P00995 79 aa12.18□□□□□ -0.46
TRIM3-201ENST00000345851 KRTAP10-1P60331 282 aa12.18□□□□□ -0.46
TRIM3-201ENST00000345851 SSBP3-AS1Q7Z2R9 100 aa12.12□□□□□ -0.47
TRIM3-201ENST00000345851 VPS13BQ7Z7G8 4022 aa12.09□□□□□ -0.47
TRIM3-201ENST00000345851 KMT2CQ8NEZ4 4911 aaKnown RBP12.08□□□□□ -0.48
TRIM3-201ENST00000345851 KRTAP16-1A8MUX0 517 aa12.07□□□□□ -0.48
TRIM3-201ENST00000345851 Q8N1X5 172 aa12.03□□□□□ -0.48
TRIM3-201ENST00000345851 KRTAP13-2Q52LG2 175 aa12□□□□□ -0.49
TRIM3-201ENST00000345851 Q6ZSA8 131 aa11.98□□□□□ -0.49
TRIM3-201ENST00000345851 DYNC1H1Q14204 4646 aaKnown RBP11.95□□□□□ -0.5
TRIM3-201ENST00000345851 RYR2Q92736 4967 aa11.91□□□□□ -0.5
TRIM3-201ENST00000345851 FAT1Q14517 4588 aa11.9□□□□□ -0.5
TRIM3-201ENST00000345851 H0YAA0 97 aa11.89□□□□□ -0.51
TRIM3-201ENST00000345851 FLG2Q5D862 2391 aaPredicted RBP11.88□□□□□ -0.51
TRIM3-201ENST00000345851 SMR3BP02814 79 aaPredicted RBP11.88□□□□□ -0.51
TRIM3-201ENST00000345851 A8MUU9 505 aa11.84□□□□□ -0.51
TRIM3-201ENST00000345851 TYMSOSQ8TAI1 123 aa11.83□□□□□ -0.52
TRIM3-201ENST00000345851 LINC00304Q8N9R0 145 aa11.81□□□□□ -0.52
TRIM3-201ENST00000345851 KRTAP25-1Q3LHN0 102 aa11.79□□□□□ -0.52
TRIM3-201ENST00000345851 APOBP04114 4563 aaKnown RBP11.77□□□□□ -0.53
TRIM3-201ENST00000345851 CRIPTQ9P021 101 aa11.74□□□□□ -0.53
TRIM3-201ENST00000345851 RYR3Q15413 4870 aa11.73□□□□□ -0.53
TRIM3-201ENST00000345851 KRTAP1-4P0C5Y4 121 aa11.72□□□□□ -0.53
TRIM3-201ENST00000345851 A0A1B0GVY2 172 aa11.72□□□□□ -0.53
TRIM3-201ENST00000345851 A0A1B0GU33 70 aa11.71□□□□□ -0.54
TRIM3-201ENST00000345851 ROMO1P60602 79 aa11.68□□□□□ -0.54
TRIM3-201ENST00000345851 H1FX-AS1Q4G0G2 97 aa11.62□□□□□ -0.55
TRIM3-201ENST00000345851 KRTAP3-1Q9BYR8 98 aa11.56□□□□□ -0.56
TRIM3-201ENST00000345851 C9orf92A6NGG3 77 aa11.53□□□□□ -0.56
TRIM3-201ENST00000345851 LRP1Q07954 4544 aaKnown RBP11.46□□□□□ -0.57
TRIM3-201ENST00000345851 KRTAP10-4P60372 401 aaPredicted RBP11.46□□□□□ -0.57
TRIM3-201ENST00000345851 K7ERS5 55 aa11.46□□□□□ -0.57
TRIM3-201ENST00000345851 HSPG2P98160 4391 aa11.43□□□□□ -0.58
TRIM3-201ENST00000345851 COX6B2Q6YFQ2 88 aa11.42□□□□□ -0.58
TRIM3-201ENST00000345851 P0C880 135 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms