RNA–Protein interactions for RNA: ENST00000344063.6

RPL28-201, Transcript of ribosomal protein L28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPL28, Length 4,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-201ENST00000344063 KRTAP29-1A8MX34 341 aaPredicted RBP6.61□□□□□ -1.35
RPL28-201ENST00000344063 NIPBLQ6KC79 2804 aaeCLIP6.59□□□□□ -1.35
RPL28-201ENST00000344063 MXRA5Q9NR99 2828 aa6.58□□□□□ -1.36
RPL28-201ENST00000344063 A0A0A0MQY5 61 aa6.57□□□□□ -1.36
RPL28-201ENST00000344063 SPENQ96T58 3664 aaKnown RBP6.57□□□□□ -1.36
RPL28-201ENST00000344063 C9orf92A6NGG3 77 aa6.56□□□□□ -1.36
RPL28-201ENST00000344063 LCE6AA0A183 80 aa6.55□□□□□ -1.36
RPL28-201ENST00000344063 KMT2BQ9UMN6 2715 aaPredicted RBP6.55□□□□□ -1.36
RPL28-201ENST00000344063 KRTAP7-1Q8IUC3 87 aa6.53□□□□□ -1.36
RPL28-201ENST00000344063 A6NN06 94 aa6.53□□□□□ -1.36
RPL28-201ENST00000344063 LINC00483Q53H64 154 aa6.53□□□□□ -1.36
RPL28-201ENST00000344063 ADM2Q7Z4H4 148 aa6.53□□□□□ -1.36
RPL28-201ENST00000344063 A0A1B0GU33 70 aa6.52□□□□□ -1.37
RPL28-201ENST00000344063 Q5W150 140 aa6.51□□□□□ -1.37
RPL28-201ENST00000344063 A0A087X002 238 aa6.51□□□□□ -1.37
RPL28-201ENST00000344063 NOTCH2NLQ7Z3S9 236 aa6.51□□□□□ -1.37
RPL28-201ENST00000344063 DMAC1Q96GE9 116 aa6.5□□□□□ -1.37
RPL28-201ENST00000344063 Q6ZR54 194 aa6.5□□□□□ -1.37
RPL28-201ENST00000344063 PANO1I0J062 215 aa6.49□□□□□ -1.37
RPL28-201ENST00000344063 KRTAP11-1Q8IUC1 163 aa6.48□□□□□ -1.37
RPL28-201ENST00000344063 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
RPL28-201ENST00000344063 KRTAP16-1A8MUX0 517 aa6.41□□□□□ -1.38
RPL28-201ENST00000344063 Q6ZRN7 208 aaPredicted RBP6.39□□□□□ -1.39
RPL28-201ENST00000344063 KRTAP13-1Q8IUC0 172 aa6.38□□□□□ -1.39
RPL28-201ENST00000344063 ASB16-AS1Q495Z4 193 aa6.34□□□□□ -1.39
RPL28-201ENST00000344063 SPATA8Q6RVD6 105 aa6.34□□□□□ -1.4
RPL28-201ENST00000344063 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
RPL28-201ENST00000344063 KRTAP10-2P60368 255 aa6.33□□□□□ -1.4
RPL28-201ENST00000344063 KRTAP10-1P60331 282 aa6.32□□□□□ -1.4
RPL28-201ENST00000344063 TENM3Q9P273 2699 aa6.32□□□□□ -1.4
RPL28-201ENST00000344063 ZFHX3Q15911 3703 aa6.28□□□□□ -1.4
RPL28-201ENST00000344063 PDZD2O15018 2839 aa6.27□□□□□ -1.41
RPL28-201ENST00000344063 Q6ZSA8 131 aa6.27□□□□□ -1.41
RPL28-201ENST00000344063 ROMO1P60602 79 aa6.27□□□□□ -1.41
RPL28-201ENST00000344063 TENM4Q6N022 2769 aa6.25□□□□□ -1.41
RPL28-201ENST00000344063 RPL37P61927 97 aaKnown RBP6.24□□□□□ -1.41
RPL28-201ENST00000344063 VWFP04275 2813 aa6.23□□□□□ -1.41
RPL28-201ENST00000344063 NDUFAF8A1L188 74 aa6.21□□□□□ -1.41
RPL28-201ENST00000344063 H1FX-AS1Q4G0G2 97 aa6.2□□□□□ -1.42
RPL28-201ENST00000344063 Q5VSD8 79 aa6.19□□□□□ -1.42
RPL28-201ENST00000344063 TENM1Q9UKZ4 2725 aa6.19□□□□□ -1.42
RPL28-201ENST00000344063 KRTAP13-2Q52LG2 175 aa6.18□□□□□ -1.42
RPL28-201ENST00000344063 KRTAP25-1Q3LHN0 102 aa6.18□□□□□ -1.42
RPL28-201ENST00000344063 RPS29P62273 56 aaKnown RBP6.16□□□□□ -1.42
RPL28-201ENST00000344063 PKD1L1Q8TDX9 2849 aa6.15□□□□□ -1.42
RPL28-201ENST00000344063 FBN1P35555 2871 aaKnown RBP6.15□□□□□ -1.43
RPL28-201ENST00000344063 CSMD2Q7Z408 3487 aa6.14□□□□□ -1.43
RPL28-201ENST00000344063 TGP01266 2768 aa6.13□□□□□ -1.43
RPL28-201ENST00000344063 KRTAP21-3Q3LHN1 58 aa6.12□□□□□ -1.43
RPL28-201ENST00000344063 S4R3F8 94 aa6.12□□□□□ -1.43
RPL28-201ENST00000344063 R4GN34 69 aa6.1□□□□□ -1.43
RPL28-201ENST00000344063 M0R2T5 61 aa6.09□□□□□ -1.43
RPL28-201ENST00000344063 SEC61BP60468 96 aaKnown RBP6.09□□□□□ -1.43
RPL28-201ENST00000344063 BSNQ9UPA5 3926 aa6.08□□□□□ -1.44
RPL28-201ENST00000344063 SRRM2Q9UQ35 2752 aaKnown RBP6.06□□□□□ -1.44
RPL28-201ENST00000344063 A8MUU9 505 aa6.04□□□□□ -1.44
RPL28-201ENST00000344063 NBPF19A0A087WUL8 3843 aa6.01□□□□□ -1.45
RPL28-201ENST00000344063 TENM2Q9NT68 2774 aa5.99□□□□□ -1.45
RPL28-201ENST00000344063 M0QZ58 72 aa5.98□□□□□ -1.45
RPL28-201ENST00000344063 KRTAP1-4P0C5Y4 121 aa5.97□□□□□ -1.45
RPL28-201ENST00000344063 VPS13CQ709C8 3753 aa5.97□□□□□ -1.45
RPL28-201ENST00000344063 H0YAA0 97 aa5.96□□□□□ -1.45
RPL28-201ENST00000344063 PLAC4Q8WY50 150 aa5.96□□□□□ -1.46
RPL28-201ENST00000344063 OTOGQ6ZRI0 2925 aa5.95□□□□□ -1.46
RPL28-201ENST00000344063 C20orf166-AS1Q96NR2 134 aa5.95□□□□□ -1.46
RPL28-201ENST00000344063 C10orf95Q9H7T3 257 aa5.93□□□□□ -1.46
RPL28-201ENST00000344063 KRTAP13-3Q3SY46 172 aa5.9□□□□□ -1.47
RPL28-201ENST00000344063 TRRAPQ9Y4A5 3859 aa5.88□□□□□ -1.47
RPL28-201ENST00000344063 FBN3Q75N90 2809 aa5.84□□□□□ -1.47
RPL28-201ENST00000344063 ANK3Q12955 4377 aaKnown RBP5.79□□□□□ -1.48
RPL28-201ENST00000344063 COL7A1Q02388 2944 aa5.75□□□□□ -1.49
RPL28-201ENST00000344063 CSMD3Q7Z407 3707 aa5.72□□□□□ -1.49
RPL28-201ENST00000344063 MEGF8Q7Z7M0 2845 aa5.71□□□□□ -1.5
RPL28-201ENST00000344063 XP32Q5T750 250 aa5.68□□□□□ -1.5
RPL28-201ENST00000344063 P0C880 135 aa5.66□□□□□ -1.5
RPL28-201ENST00000344063 AKAP9Q99996 3911 aa5.59□□□□□ -1.51
RPL28-201ENST00000344063 TNP1P09430 55 aa5.59□□□□□ -1.51
RPL28-201ENST00000344063 ZNF469Q96JG9 3925 aaPredicted RBP5.59□□□□□ -1.52
RPL28-201ENST00000344063 TPRXLQ17RH7 258 aa5.58□□□□□ -1.52
RPL28-201ENST00000344063 KRTAP3-1Q9BYR8 98 aa5.56□□□□□ -1.52
RPL28-201ENST00000344063 KRTAP10-8P60410 259 aa5.55□□□□□ -1.52
RPL28-201ENST00000344063 A0A1B0GVY2 172 aa5.54□□□□□ -1.52
RPL28-201ENST00000344063 PP632Q6XCG6 107 aa5.52□□□□□ -1.53
RPL28-201ENST00000344063 KRTAP12-2P59991 146 aa5.51□□□□□ -1.53
RPL28-201ENST00000344063 KRTAP13-4Q3LI77 160 aa5.47□□□□□ -1.53
RPL28-201ENST00000344063 KRTAP12-1P59990 96 aa5.39□□□□□ -1.55
RPL28-201ENST00000344063 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
RPL28-201ENST00000344063 HUWE1Q7Z6Z7 4374 aaKnown RBP5.38□□□□□ -1.55
RPL28-201ENST00000344063 KRTAP15-1Q3LI76 137 aa5.28□□□□□ -1.56
RPL28-201ENST00000344063 DNAH10Q8IVF4 4471 aa5.27□□□□□ -1.57
RPL28-201ENST00000344063 KRTAP10-10P60014 251 aa5.24□□□□□ -1.57
RPL28-201ENST00000344063 KRTAP10-4P60372 401 aaPredicted RBP5.23□□□□□ -1.57
RPL28-201ENST00000344063 KRTAP3-2Q9BYR7 98 aa5.23□□□□□ -1.57
RPL28-201ENST00000344063 KRTAP3-3Q9BYR6 98 aa5.21□□□□□ -1.58
RPL28-201ENST00000344063 DNAH9Q9NYC9 4486 aa5.17□□□□□ -1.58
RPL28-201ENST00000344063 MT1HL1P0DM35 61 aa5.14□□□□□ -1.59
RPL28-201ENST00000344063 PRO2289Q9P1D8 64 aa5.12□□□□□ -1.59
RPL28-201ENST00000344063 PLECQ15149 4684 aaKnown RBP5.1□□□□□ -1.59
RPL28-201ENST00000344063 DNAH11Q96DT5 4516 aa5.08□□□□□ -1.6
RPL28-201ENST00000344063 DNAH1Q9P2D7 4330 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms