RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 NOTCH2NLQ7Z3S9 236 aa8.06□□□□□ -1.12
RTN4-202ENST00000337526 S4R3F8 94 aa8.06□□□□□ -1.12
RTN4-202ENST00000337526 KRTAP11-1Q8IUC1 163 aa8.05□□□□□ -1.12
RTN4-202ENST00000337526 KRTAP7-1Q8IUC3 87 aa8.05□□□□□ -1.12
RTN4-202ENST00000337526 NF1P21359 2839 aa8.04□□□□□ -1.12
RTN4-202ENST00000337526 CRYBG3Q68DQ2 2970 aa8.01□□□□□ -1.13
RTN4-202ENST00000337526 LCE6AA0A183 80 aa8□□□□□ -1.13
RTN4-202ENST00000337526 FBN2P35556 2912 aa7.99□□□□□ -1.13
RTN4-202ENST00000337526 WDFY3Q8IZQ1 3526 aa7.99□□□□□ -1.13
RTN4-202ENST00000337526 RPL37P61927 97 aaKnown RBP7.99□□□□□ -1.13
RTN4-202ENST00000337526 R4GN34 69 aa7.96□□□□□ -1.13
RTN4-202ENST00000337526 H1FX-AS1Q4G0G2 97 aa7.95□□□□□ -1.14
RTN4-202ENST00000337526 Q6ZRN7 208 aaPredicted RBP7.94□□□□□ -1.14
RTN4-202ENST00000337526 DMDP11532 3685 aa7.94□□□□□ -1.14
RTN4-202ENST00000337526 ASPMQ8IZT6 3477 aa7.91□□□□□ -1.14
RTN4-202ENST00000337526 ASB16-AS1Q495Z4 193 aa7.91□□□□□ -1.14
RTN4-202ENST00000337526 H3BS24 57 aa7.91□□□□□ -1.14
RTN4-202ENST00000337526 Q5VSD8 79 aa7.91□□□□□ -1.14
RTN4-202ENST00000337526 DCHS1Q96JQ0 3298 aa7.91□□□□□ -1.14
RTN4-202ENST00000337526 ROMO1P60602 79 aa7.9□□□□□ -1.14
RTN4-202ENST00000337526 SPATA8Q6RVD6 105 aa7.9□□□□□ -1.14
RTN4-202ENST00000337526 LAMA5O15230 3695 aa7.89□□□□□ -1.15
RTN4-202ENST00000337526 HRNRQ86YZ3 2850 aaPredicted RBP7.89□□□□□ -1.15
RTN4-202ENST00000337526 M0R2T5 61 aa7.88□□□□□ -1.15
RTN4-202ENST00000337526 KRTAP13-1Q8IUC0 172 aa7.87□□□□□ -1.15
RTN4-202ENST00000337526 TENM3Q9P273 2699 aa7.87□□□□□ -1.15
RTN4-202ENST00000337526 RELNP78509 3460 aa7.86□□□□□ -1.15
RTN4-202ENST00000337526 SEC61BP60468 96 aaKnown RBP7.85□□□□□ -1.15
RTN4-202ENST00000337526 A6NN06 94 aa7.82□□□□□ -1.16
RTN4-202ENST00000337526 M0QZ58 72 aa7.81□□□□□ -1.16
RTN4-202ENST00000337526 A8MU10 97 aa7.8□□□□□ -1.16
RTN4-202ENST00000337526 KRTAP13-2Q52LG2 175 aa7.8□□□□□ -1.16
RTN4-202ENST00000337526 MXRA5Q9NR99 2828 aa7.78□□□□□ -1.16
RTN4-202ENST00000337526 ADM2Q7Z4H4 148 aa7.76□□□□□ -1.17
RTN4-202ENST00000337526 RPS29P62273 56 aaKnown RBP7.75□□□□□ -1.17
RTN4-202ENST00000337526 ZFHX4Q86UP3 3567 aa7.73□□□□□ -1.17
RTN4-202ENST00000337526 TENM1Q9UKZ4 2725 aa7.7□□□□□ -1.18
RTN4-202ENST00000337526 A0A0A0MQY5 61 aa7.68□□□□□ -1.18
RTN4-202ENST00000337526 CELSR1Q9NYQ6 3014 aa7.65□□□□□ -1.18
RTN4-202ENST00000337526 PDZD2O15018 2839 aa7.64□□□□□ -1.19
RTN4-202ENST00000337526 KRTAP25-1Q3LHN0 102 aa7.64□□□□□ -1.19
RTN4-202ENST00000337526 OTOGQ6ZRI0 2925 aa7.6□□□□□ -1.19
RTN4-202ENST00000337526 PKD1L1Q8TDX9 2849 aa7.56□□□□□ -1.2
RTN4-202ENST00000337526 A8MUU9 505 aa7.55□□□□□ -1.2
RTN4-202ENST00000337526 C20orf166-AS1Q96NR2 134 aa7.5□□□□□ -1.21
RTN4-202ENST00000337526 TGP01266 2768 aa7.49□□□□□ -1.21
RTN4-202ENST00000337526 PLAC4Q8WY50 150 aa7.48□□□□□ -1.21
RTN4-202ENST00000337526 SMG1Q96Q15 3661 aaKnown RBP7.48□□□□□ -1.21
RTN4-202ENST00000337526 KRTAP1-4P0C5Y4 121 aa7.45□□□□□ -1.22
RTN4-202ENST00000337526 TENM2Q9NT68 2774 aa7.44□□□□□ -1.22
RTN4-202ENST00000337526 VWFP04275 2813 aa7.42□□□□□ -1.22
RTN4-202ENST00000337526 ZFHX3Q15911 3703 aa7.41□□□□□ -1.22
RTN4-202ENST00000337526 NDUFAF8A1L188 74 aa7.39□□□□□ -1.23
RTN4-202ENST00000337526 KRTAP16-1A8MUX0 517 aa7.39□□□□□ -1.23
RTN4-202ENST00000337526 NBPF19A0A087WUL8 3843 aa7.38□□□□□ -1.23
RTN4-202ENST00000337526 CSMD1Q96PZ7 3565 aa7.37□□□□□ -1.23
RTN4-202ENST00000337526 FBN1P35555 2871 aaKnown RBP7.37□□□□□ -1.23
RTN4-202ENST00000337526 SVEP1Q4LDE5 3571 aa7.33□□□□□ -1.24
RTN4-202ENST00000337526 H0YAA0 97 aa7.29□□□□□ -1.24
RTN4-202ENST00000337526 SRRM2Q9UQ35 2752 aaKnown RBP7.27□□□□□ -1.25
RTN4-202ENST00000337526 XP32Q5T750 250 aa7.27□□□□□ -1.25
RTN4-202ENST00000337526 SPENQ96T58 3664 aaKnown RBP7.25□□□□□ -1.25
RTN4-202ENST00000337526 TNP1P09430 55 aa7.24□□□□□ -1.25
RTN4-202ENST00000337526 C10orf95Q9H7T3 257 aa7.23□□□□□ -1.25
RTN4-202ENST00000337526 CUBNO60494 3623 aa7.22□□□□□ -1.25
RTN4-202ENST00000337526 CSMD2Q7Z408 3487 aa7.16□□□□□ -1.26
RTN4-202ENST00000337526 KRTAP13-3Q3SY46 172 aa7.16□□□□□ -1.26
RTN4-202ENST00000337526 BSNQ9UPA5 3926 aa7.11□□□□□ -1.27
RTN4-202ENST00000337526 P0C880 135 aa7.1□□□□□ -1.27
RTN4-202ENST00000337526 PP632Q6XCG6 107 aa7.09□□□□□ -1.27
RTN4-202ENST00000337526 FBN3Q75N90 2809 aa7.07□□□□□ -1.28
RTN4-202ENST00000337526 TPRXLQ17RH7 258 aa7.07□□□□□ -1.28
RTN4-202ENST00000337526 KRTAP10-8P60410 259 aa7□□□□□ -1.29
RTN4-202ENST00000337526 A0A1B0GVY2 172 aa7□□□□□ -1.29
RTN4-202ENST00000337526 ANK3Q12955 4377 aaKnown RBP6.98□□□□□ -1.29
RTN4-202ENST00000337526 COL7A1Q02388 2944 aa6.93□□□□□ -1.3
RTN4-202ENST00000337526 MEGF8Q7Z7M0 2845 aa6.93□□□□□ -1.3
RTN4-202ENST00000337526 TRRAPQ9Y4A5 3859 aa6.82□□□□□ -1.32
RTN4-202ENST00000337526 KRTAP10-10P60014 251 aa6.81□□□□□ -1.32
RTN4-202ENST00000337526 KRTAP12-2P59991 146 aa6.81□□□□□ -1.32
RTN4-202ENST00000337526 KRTAP3-1Q9BYR8 98 aa6.81□□□□□ -1.32
RTN4-202ENST00000337526 VPS13CQ709C8 3753 aa6.78□□□□□ -1.32
RTN4-202ENST00000337526 KRTAP12-1P59990 96 aa6.72□□□□□ -1.33
RTN4-202ENST00000337526 PRO2289Q9P1D8 64 aa6.65□□□□□ -1.35
RTN4-202ENST00000337526 ZNF469Q96JG9 3925 aaPredicted RBP6.64□□□□□ -1.35
RTN4-202ENST00000337526 KRTAP13-4Q3LI77 160 aa6.62□□□□□ -1.35
RTN4-202ENST00000337526 KRTAP10-6P60371 365 aaPredicted RBP6.62□□□□□ -1.35
RTN4-202ENST00000337526 DNHD1Q96M86 4753 aa6.53□□□□□ -1.36
RTN4-202ENST00000337526 AKAP9Q99996 3911 aa6.5□□□□□ -1.37
RTN4-202ENST00000337526 KRTAP3-2Q9BYR7 98 aa6.39□□□□□ -1.39
RTN4-202ENST00000337526 KRTAP3-3Q9BYR6 98 aa6.38□□□□□ -1.39
RTN4-202ENST00000337526 MT1HL1P0DM35 61 aa6.36□□□□□ -1.39
RTN4-202ENST00000337526 HUWE1Q7Z6Z7 4374 aaKnown RBP6.36□□□□□ -1.39
RTN4-202ENST00000337526 KRTAP4-5Q9BYR2 181 aa6.31□□□□□ -1.4
RTN4-202ENST00000337526 DNAH9Q9NYC9 4486 aa6.28□□□□□ -1.4
RTN4-202ENST00000337526 KRTAP10-4P60372 401 aaPredicted RBP6.27□□□□□ -1.41
RTN4-202ENST00000337526 KRTAP15-1Q3LI76 137 aa6.23□□□□□ -1.41
RTN4-202ENST00000337526 CSMD3Q7Z407 3707 aa6.21□□□□□ -1.41
RTN4-202ENST00000337526 ALMS1Q8TCU4 4167 aa6.13□□□□□ -1.43
RTN4-202ENST00000337526 PLECQ15149 4684 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms