RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 C1orf64Q8NEQ6 169 aa5.19□□□□□ -1.58
SNCA-201ENST00000336904 KRTAP13-2Q52LG2 175 aa5.18□□□□□ -1.58
SNCA-201ENST00000336904 TRAV22A0A0B4J277 110 aa5.18□□□□□ -1.58
SNCA-201ENST00000336904 A0A1B0GVX0 72 aa5.18□□□□□ -1.58
SNCA-201ENST00000336904 SACSQ9NZJ4 4579 aa5.17□□□□□ -1.58
SNCA-201ENST00000336904 FAT1Q14517 4588 aa5.15□□□□□ -1.59
SNCA-201ENST00000336904 KMT2CQ8NEZ4 4911 aaKnown RBP5.14□□□□□ -1.59
SNCA-201ENST00000336904 SMIM26A0A096LP01 95 aa5.14□□□□□ -1.59
SNCA-201ENST00000336904 Q5W150 140 aa5.13□□□□□ -1.59
SNCA-201ENST00000336904 PSPHP1O15172 72 aa5.13□□□□□ -1.59
SNCA-201ENST00000336904 ATP5EP56381 51 aaPredicted RBP5.13□□□□□ -1.59
SNCA-201ENST00000336904 Q6ZSA8 131 aa5.13□□□□□ -1.59
SNCA-201ENST00000336904 LINC00336Q6ZUF6 198 aa5.13□□□□□ -1.59
SNCA-201ENST00000336904 CD164Q04900 197 aa5.12□□□□□ -1.59
SNCA-201ENST00000336904 MRPL34Q9BQ48 92 aaKnown RBP5.12□□□□□ -1.59
SNCA-201ENST00000336904 PLA2G1BP04054 148 aaKnown RBP5.11□□□□□ -1.59
SNCA-201ENST00000336904 KRTAP1-4P0C5Y4 121 aa5.1□□□□□ -1.59
SNCA-201ENST00000336904 DYNC1H1Q14204 4646 aaKnown RBP5.1□□□□□ -1.59
SNCA-201ENST00000336904 PRR26Q8N8Z3 221 aa5.1□□□□□ -1.59
SNCA-201ENST00000336904 C1orf195Q5TG92 126 aa5.08□□□□□ -1.6
SNCA-201ENST00000336904 BRK1Q8WUW1 75 aa5.08□□□□□ -1.6
SNCA-201ENST00000336904 ASB16-AS1Q495Z4 193 aa5.08□□□□□ -1.6
SNCA-201ENST00000336904 SSBP3-AS1Q7Z2R9 100 aa5.07□□□□□ -1.6
SNCA-201ENST00000336904 Q8N9P0 234 aaPredicted RBP5.07□□□□□ -1.6
SNCA-201ENST00000336904 TYMSOSQ8TAI1 123 aa5.06□□□□□ -1.6
SNCA-201ENST00000336904 SVIPQ8NHG7 77 aa5.06□□□□□ -1.6
SNCA-201ENST00000336904 LINC00313P59037 77 aa5.05□□□□□ -1.6
SNCA-201ENST00000336904 A8MUN3 132 aa5.04□□□□□ -1.6
SNCA-201ENST00000336904 A8MU10 97 aa5.04□□□□□ -1.6
SNCA-201ENST00000336904 COA5Q86WW8 74 aa5.04□□□□□ -1.6
SNCA-201ENST00000336904 CYP4F30PQ9H0H9 118 aa5.04□□□□□ -1.6
SNCA-201ENST00000336904 TP53AIP1Q9HCN2 124 aa5.03□□□□□ -1.6
SNCA-201ENST00000336904 C4orf48Q5BLP8 95 aa5.02□□□□□ -1.61
SNCA-201ENST00000336904 RYR2Q92736 4967 aa5.02□□□□□ -1.61
SNCA-201ENST00000336904 FLG2Q5D862 2391 aaPredicted RBP5.02□□□□□ -1.61
SNCA-201ENST00000336904 C9orf92A6NGG3 77 aa5.01□□□□□ -1.61
SNCA-201ENST00000336904 H3BPC8 53 aa5.01□□□□□ -1.61
SNCA-201ENST00000336904 SPAG11AQ6PDA7 123 aa5.01□□□□□ -1.61
SNCA-201ENST00000336904 APOBP04114 4563 aaKnown RBP5□□□□□ -1.61
SNCA-201ENST00000336904 IGKV2D-30A0A075B6S6 120 aa5□□□□□ -1.61
SNCA-201ENST00000336904 IGKV2-30P06310 120 aa5□□□□□ -1.61
SNCA-201ENST00000336904 IGLV7-46A0A075B6I9 117 aa5□□□□□ -1.61
SNCA-201ENST00000336904 LRP1Q07954 4544 aaKnown RBP4.99□□□□□ -1.61
SNCA-201ENST00000336904 HRES1P13985 223 aa4.99□□□□□ -1.61
SNCA-201ENST00000336904 SPANXA2-OT1Q8N9U9 137 aa4.99□□□□□ -1.61
SNCA-201ENST00000336904 PRR15LQ9BU68 103 aa4.99□□□□□ -1.61
SNCA-201ENST00000336904 KRTAP13-3Q3SY46 172 aa4.98□□□□□ -1.61
SNCA-201ENST00000336904 LINC00304Q8N9R0 145 aa4.97□□□□□ -1.61
SNCA-201ENST00000336904 KRTAP21-3Q3LHN1 58 aa4.97□□□□□ -1.61
SNCA-201ENST00000336904 RYR3Q15413 4870 aa4.96□□□□□ -1.61
SNCA-201ENST00000336904 KRTAP16-1A8MUX0 517 aa4.96□□□□□ -1.62
SNCA-201ENST00000336904 A0A1B0GVY2 172 aa4.96□□□□□ -1.62
SNCA-201ENST00000336904 Q1T7F1 81 aa4.96□□□□□ -1.62
SNCA-201ENST00000336904 LIMD2Q9BT23 127 aa4.95□□□□□ -1.62
SNCA-201ENST00000336904 DMBT1Q9UGM3 2413 aaPredicted RBP4.95□□□□□ -1.62
SNCA-201ENST00000336904 C8orf87E5RJ46 101 aa4.94□□□□□ -1.62
SNCA-201ENST00000336904 LOC101927531A0A1B0GV80 90 aa4.94□□□□□ -1.62
SNCA-201ENST00000336904 CHKB-CPT1BH3BT56 60 aa4.94□□□□□ -1.62
SNCA-201ENST00000336904 Q5VV11 94 aa4.94□□□□□ -1.62
SNCA-201ENST00000336904 PRO0628Q9UI54 55 aa4.92□□□□□ -1.62
SNCA-201ENST00000336904 SPINK1P00995 79 aa4.92□□□□□ -1.62
SNCA-201ENST00000336904 PKHD1L1Q86WI1 4243 aa4.92□□□□□ -1.62
SNCA-201ENST00000336904 FAM229AH3BQW9 127 aa4.91□□□□□ -1.62
SNCA-201ENST00000336904 KRTAP10-4P60372 401 aaPredicted RBP4.91□□□□□ -1.62
SNCA-201ENST00000336904 Q8N1X5 172 aa4.91□□□□□ -1.62
SNCA-201ENST00000336904 MYCBP2O75592 4640 aa4.9□□□□□ -1.63
SNCA-201ENST00000336904 KIAA1109Q2LD37 5005 aa4.88□□□□□ -1.63
SNCA-201ENST00000336904 KRTAP17-1Q9BYP8 105 aa4.88□□□□□ -1.63
SNCA-201ENST00000336904 A6NED7 52 aa4.87□□□□□ -1.63
SNCA-201ENST00000336904 KRTAP3-3Q9BYR6 98 aa4.87□□□□□ -1.63
SNCA-201ENST00000336904 KRTAP3-2Q9BYR7 98 aa4.87□□□□□ -1.63
SNCA-201ENST00000336904 C7orf65Q6ZTY9 151 aa4.86□□□□□ -1.63
SNCA-201ENST00000336904 SPTSSBQ8NFR3 76 aa4.86□□□□□ -1.63
SNCA-201ENST00000336904 HSPG2P98160 4391 aa4.85□□□□□ -1.63
SNCA-201ENST00000336904 SPINK7P58062 85 aa4.85□□□□□ -1.63
SNCA-201ENST00000336904 ACYP2P14621 99 aa4.84□□□□□ -1.63
SNCA-201ENST00000336904 V9GYY9 64 aa4.83□□□□□ -1.64
SNCA-201ENST00000336904 Q5VSD8 79 aa4.83□□□□□ -1.64
SNCA-201ENST00000336904 LCA10Q71F78 164 aa4.83□□□□□ -1.64
SNCA-201ENST00000336904 DMAC1Q96GE9 116 aa4.83□□□□□ -1.64
SNCA-201ENST00000336904 EPPK1P58107 5090 aaKnown RBP4.82□□□□□ -1.64
SNCA-201ENST00000336904 FAT3Q8TDW7 4589 aa4.81□□□□□ -1.64
SNCA-201ENST00000336904 LINC01558Q9Y6Z2 57 aa4.8□□□□□ -1.64
SNCA-201ENST00000336904 Q75L30 129 aa4.78□□□□□ -1.64
SNCA-201ENST00000336904 TNXBP22105 4242 aa4.78□□□□□ -1.64
SNCA-201ENST00000336904 RYR1P21817 5038 aa4.77□□□□□ -1.65
SNCA-201ENST00000336904 PMAIP1Q13794 54 aa4.75□□□□□ -1.65
SNCA-201ENST00000336904 A0A1B0GU69 56 aa4.74□□□□□ -1.65
SNCA-201ENST00000336904 RPS29P62273 56 aaKnown RBP4.72□□□□□ -1.65
SNCA-201ENST00000336904 LPAP08519 4548 aa4.72□□□□□ -1.65
SNCA-201ENST00000336904 A8MUU9 505 aa4.72□□□□□ -1.65
SNCA-201ENST00000336904 C20orf166-AS1Q96NR2 134 aa4.72□□□□□ -1.65
SNCA-201ENST00000336904 KRTAP3-1Q9BYR8 98 aa4.72□□□□□ -1.65
SNCA-201ENST00000336904 ABCA13Q86UQ4 5058 aa4.7□□□□□ -1.66
SNCA-201ENST00000336904 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
SNCA-201ENST00000336904 KRTAP10-8P60410 259 aa4.68□□□□□ -1.66
SNCA-201ENST00000336904 KRTAP4-5Q9BYR2 181 aa4.67□□□□□ -1.66
SNCA-201ENST00000336904 LRP2P98164 4655 aa4.66□□□□□ -1.66
SNCA-201ENST00000336904 ATP11AUNQ6ZP68 121 aa4.64□□□□□ -1.67
SNCA-201ENST00000336904 MT1HL1P0DM35 61 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms