RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SPRR1BP22528 89 aa6.02□□□□□ -1.45
HMGB3-201ENST00000325307 EPPK1P58107 5090 aaKnown RBP6.02□□□□□ -1.45
HMGB3-201ENST00000325307 PSPHP1O15172 72 aa6.01□□□□□ -1.45
HMGB3-201ENST00000325307 LINC00313P59037 77 aa6.01□□□□□ -1.45
HMGB3-201ENST00000325307 LINC00483Q53H64 154 aa6.01□□□□□ -1.45
HMGB3-201ENST00000325307 Q5VV11 94 aa6□□□□□ -1.45
HMGB3-201ENST00000325307 KRTAP10-4P60372 401 aaPredicted RBP6□□□□□ -1.45
HMGB3-201ENST00000325307 BPY2O14599 106 aa5.99□□□□□ -1.45
HMGB3-201ENST00000325307 IGKV4-1P06312 121 aa5.98□□□□□ -1.45
HMGB3-201ENST00000325307 MOBPQ13875 183 aa5.98□□□□□ -1.45
HMGB3-201ENST00000325307 A0A0G2JQZ4 141 aa5.97□□□□□ -1.45
HMGB3-201ENST00000325307 FAT1Q14517 4588 aa5.97□□□□□ -1.45
HMGB3-201ENST00000325307 A0A1W2PNM2 257 aa5.97□□□□□ -1.45
HMGB3-201ENST00000325307 Q8N1X5 172 aa5.97□□□□□ -1.45
HMGB3-201ENST00000325307 KIAA1109Q2LD37 5005 aa5.96□□□□□ -1.46
HMGB3-201ENST00000325307 IGFL1Q6UW32 110 aa5.96□□□□□ -1.46
HMGB3-201ENST00000325307 ZCCHC13Q8WW36 166 aaKnown RBP5.96□□□□□ -1.46
HMGB3-201ENST00000325307 RYR1P21817 5038 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 HSPG2P98160 4391 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 A0A087X002 238 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 KRTAP1-4P0C5Y4 121 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 Q8NBF4 154 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 LINC01554Q52M75 96 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 IGLV8-61A0A075B6I0 122 aa5.95□□□□□ -1.46
HMGB3-201ENST00000325307 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
HMGB3-201ENST00000325307 KRTAP17-1Q9BYP8 105 aa5.93□□□□□ -1.46
HMGB3-201ENST00000325307 C1orf64Q8NEQ6 169 aa5.93□□□□□ -1.46
HMGB3-201ENST00000325307 HCG22E2RYF7 251 aa5.92□□□□□ -1.46
HMGB3-201ENST00000325307 KRTAP13-2Q52LG2 175 aa5.92□□□□□ -1.46
HMGB3-201ENST00000325307 CYP4F30PQ9H0H9 118 aa5.92□□□□□ -1.46
HMGB3-201ENST00000325307 TYMSOSQ8TAI1 123 aa5.91□□□□□ -1.46
HMGB3-201ENST00000325307 SSBP3-AS1Q7Z2R9 100 aa5.9□□□□□ -1.46
HMGB3-201ENST00000325307 Q8N9L7 120 aa5.9□□□□□ -1.46
HMGB3-201ENST00000325307 SPTSSBQ8NFR3 76 aa5.9□□□□□ -1.46
HMGB3-201ENST00000325307 MP68P56378 58 aa5.89□□□□□ -1.47
HMGB3-201ENST00000325307 A0A1B0GW54 56 aa5.88□□□□□ -1.47
HMGB3-201ENST00000325307 FLG2Q5D862 2391 aaPredicted RBP5.88□□□□□ -1.47
HMGB3-201ENST00000325307 A0A087WSZ3 146 aa5.87□□□□□ -1.47
HMGB3-201ENST00000325307 Q75L30 129 aa5.85□□□□□ -1.47
HMGB3-201ENST00000325307 KRTAP4-5Q9BYR2 181 aa5.85□□□□□ -1.47
HMGB3-201ENST00000325307 CDC42SE1Q9NRR8 79 aa5.85□□□□□ -1.47
HMGB3-201ENST00000325307 CHKB-CPT1BH3BT56 60 aa5.85□□□□□ -1.47
HMGB3-201ENST00000325307 BIRC6Q9NR09 4857 aa5.84□□□□□ -1.47
HMGB3-201ENST00000325307 DSCR10P59022 87 aa5.83□□□□□ -1.48
HMGB3-201ENST00000325307 LINC00304Q8N9R0 145 aa5.83□□□□□ -1.48
HMGB3-201ENST00000325307 Q8N9P0 234 aaPredicted RBP5.81□□□□□ -1.48
HMGB3-201ENST00000325307 LIMD2Q9BT23 127 aa5.81□□□□□ -1.48
HMGB3-201ENST00000325307 K7EQZ3 153 aa5.81□□□□□ -1.48
HMGB3-201ENST00000325307 LOC101927531A0A1B0GV80 90 aa5.8□□□□□ -1.48
HMGB3-201ENST00000325307 SPINK1P00995 79 aa5.79□□□□□ -1.48
HMGB3-201ENST00000325307 DEFB116Q30KQ4 102 aa5.79□□□□□ -1.48
HMGB3-201ENST00000325307 PRAC1Q96KF2 57 aa5.79□□□□□ -1.48
HMGB3-201ENST00000325307 PKHD1L1Q86WI1 4243 aa5.79□□□□□ -1.48
HMGB3-201ENST00000325307 SPAG11AQ6PDA7 123 aa5.79□□□□□ -1.48
HMGB3-201ENST00000325307 KRTAP10-8P60410 259 aa5.77□□□□□ -1.49
HMGB3-201ENST00000325307 SPANXA2-OT1Q8N9U9 137 aa5.76□□□□□ -1.49
HMGB3-201ENST00000325307 NDUFB1O75438 58 aa5.75□□□□□ -1.49
HMGB3-201ENST00000325307 LRP1Q07954 4544 aaKnown RBP5.75□□□□□ -1.49
HMGB3-201ENST00000325307 PRR15LQ9BU68 103 aa5.75□□□□□ -1.49
HMGB3-201ENST00000325307 LINC00472Q9H8W2 130 aa5.75□□□□□ -1.49
HMGB3-201ENST00000325307 A6NED7 52 aa5.74□□□□□ -1.49
HMGB3-201ENST00000325307 Q96NJ1 140 aa5.74□□□□□ -1.49
HMGB3-201ENST00000325307 MYCBP2O75592 4640 aa5.74□□□□□ -1.49
HMGB3-201ENST00000325307 DMBT1Q9UGM3 2413 aaPredicted RBP5.74□□□□□ -1.49
HMGB3-201ENST00000325307 ASB16-AS1Q495Z4 193 aa5.73□□□□□ -1.49
HMGB3-201ENST00000325307 HERC2O95714 4834 aa5.73□□□□□ -1.49
HMGB3-201ENST00000325307 MT1HL1P0DM35 61 aa5.73□□□□□ -1.49
HMGB3-201ENST00000325307 ADM2Q7Z4H4 148 aa5.72□□□□□ -1.49
HMGB3-201ENST00000325307 IGHV6-1A0A0B4J1U7 121 aa5.72□□□□□ -1.49
HMGB3-201ENST00000325307 RPS29P62273 56 aaKnown RBP5.72□□□□□ -1.49
HMGB3-201ENST00000325307 J3QL48 77 aa5.71□□□□□ -1.5
HMGB3-201ENST00000325307 KRTAP29-1A8MX34 341 aaPredicted RBP5.7□□□□□ -1.5
HMGB3-201ENST00000325307 RETNLBQ9BQ08 111 aa5.7□□□□□ -1.5
HMGB3-201ENST00000325307 H3BPC8 53 aa5.69□□□□□ -1.5
HMGB3-201ENST00000325307 ABCA13Q86UQ4 5058 aa5.69□□□□□ -1.5
HMGB3-201ENST00000325307 FAT3Q8TDW7 4589 aa5.69□□□□□ -1.5
HMGB3-201ENST00000325307 A8MWP4 228 aa5.68□□□□□ -1.5
HMGB3-201ENST00000325307 TNXBP22105 4242 aa5.67□□□□□ -1.5
HMGB3-201ENST00000325307 WFDC13Q8IUB5 93 aa5.66□□□□□ -1.5
HMGB3-201ENST00000325307 LINC00208Q96KT6 92 aa5.65□□□□□ -1.5
HMGB3-201ENST00000325307 MMP24-AS1A0A0U1RRL7 71 aa5.65□□□□□ -1.51
HMGB3-201ENST00000325307 A0A1B0GVX0 72 aa5.65□□□□□ -1.51
HMGB3-201ENST00000325307 CASC2Q6XLA1 102 aa5.64□□□□□ -1.51
HMGB3-201ENST00000325307 PRR4Q16378 134 aa5.61□□□□□ -1.51
HMGB3-201ENST00000325307 NOTCH2NLQ7Z3S9 236 aa5.61□□□□□ -1.51
HMGB3-201ENST00000325307 C8orf17Q9NRJ1 99 aa5.6□□□□□ -1.51
HMGB3-201ENST00000325307 LINC01558Q9Y6Z2 57 aa5.6□□□□□ -1.51
HMGB3-201ENST00000325307 IGLV7-46A0A075B6I9 117 aa5.6□□□□□ -1.51
HMGB3-201ENST00000325307 SPINK7P58062 85 aa5.59□□□□□ -1.51
HMGB3-201ENST00000325307 C9orf92A6NGG3 77 aa5.58□□□□□ -1.52
HMGB3-201ENST00000325307 PCLOQ9Y6V0 5065 aa5.57□□□□□ -1.52
HMGB3-201ENST00000325307 H0Y9P7 68 aa5.56□□□□□ -1.52
HMGB3-201ENST00000325307 COA5Q86WW8 74 aa5.56□□□□□ -1.52
HMGB3-201ENST00000325307 ROMO1P60602 79 aa5.56□□□□□ -1.52
HMGB3-201ENST00000325307 MRPL34Q9BQ48 92 aaKnown RBP5.53□□□□□ -1.52
HMGB3-201ENST00000325307 CSAG1Q6PB30 78 aa5.52□□□□□ -1.53
HMGB3-201ENST00000325307 KRTAP16-1A8MUX0 517 aa5.49□□□□□ -1.53
HMGB3-201ENST00000325307 KRTAP13-3Q3SY46 172 aa5.48□□□□□ -1.53
HMGB3-201ENST00000325307 P0C880 135 aa5.47□□□□□ -1.53
HMGB3-201ENST00000325307 TPRXLQ17RH7 258 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms