RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 IGLV7-43P04211 117 aa7.66□□□□□ -1.18
HMGCS1-201ENST00000325110 DNAH3Q8TD57 4116 aa7.66□□□□□ -1.18
HMGCS1-201ENST00000325110 DNAH1Q9P2D7 4330 aa7.66□□□□□ -1.18
HMGCS1-201ENST00000325110 LINC00483Q53H64 154 aa7.65□□□□□ -1.19
HMGCS1-201ENST00000325110 PRR26Q8N8Z3 221 aa7.65□□□□□ -1.19
HMGCS1-201ENST00000325110 PLAC8Q9NZF1 115 aa7.64□□□□□ -1.19
HMGCS1-201ENST00000325110 DNAH7Q8WXX0 4024 aa7.63□□□□□ -1.19
HMGCS1-201ENST00000325110 Q5W150 140 aa7.61□□□□□ -1.19
HMGCS1-201ENST00000325110 HRES1P13985 223 aa7.6□□□□□ -1.19
HMGCS1-201ENST00000325110 LOC101927531A0A1B0GV80 90 aa7.59□□□□□ -1.19
HMGCS1-201ENST00000325110 LINC00313P59037 77 aa7.59□□□□□ -1.19
HMGCS1-201ENST00000325110 IGKV2D-30A0A075B6S6 120 aa7.58□□□□□ -1.2
HMGCS1-201ENST00000325110 IGKV2-30P06310 120 aa7.58□□□□□ -1.2
HMGCS1-201ENST00000325110 KRTAP10-2P60368 255 aa7.58□□□□□ -1.2
HMGCS1-201ENST00000325110 Q6ZR54 194 aa7.58□□□□□ -1.2
HMGCS1-201ENST00000325110 C4orf48Q5BLP8 95 aa7.57□□□□□ -1.2
HMGCS1-201ENST00000325110 LCA10Q71F78 164 aa7.53□□□□□ -1.2
HMGCS1-201ENST00000325110 SSBP3-AS1Q7Z2R9 100 aa7.53□□□□□ -1.2
HMGCS1-201ENST00000325110 STARD9Q9P2P6 4700 aa7.53□□□□□ -1.2
HMGCS1-201ENST00000325110 ACYP2P14621 99 aa7.52□□□□□ -1.21
HMGCS1-201ENST00000325110 SPINK7P58062 85 aa7.52□□□□□ -1.21
HMGCS1-201ENST00000325110 SEC61GP60059 68 aa7.52□□□□□ -1.21
HMGCS1-201ENST00000325110 ASB16-AS1Q495Z4 193 aa7.52□□□□□ -1.21
HMGCS1-201ENST00000325110 Q75L30 129 aa7.52□□□□□ -1.21
HMGCS1-201ENST00000325110 SPINK1P00995 79 aa7.5□□□□□ -1.21
HMGCS1-201ENST00000325110 C8orf87E5RJ46 101 aa7.49□□□□□ -1.21
HMGCS1-201ENST00000325110 FAM229AH3BQW9 127 aa7.49□□□□□ -1.21
HMGCS1-201ENST00000325110 LINC01558Q9Y6Z2 57 aa7.48□□□□□ -1.21
HMGCS1-201ENST00000325110 FRAS1Q86XX4 4008 aa7.47□□□□□ -1.21
HMGCS1-201ENST00000325110 PLA2G1BP04054 148 aaKnown RBP7.47□□□□□ -1.21
HMGCS1-201ENST00000325110 KMT2AQ03164 3969 aa7.46□□□□□ -1.21
HMGCS1-201ENST00000325110 KRTAP10-1P60331 282 aa7.46□□□□□ -1.21
HMGCS1-201ENST00000325110 ATP11AUNQ6ZP68 121 aa7.46□□□□□ -1.22
HMGCS1-201ENST00000325110 PRKDCP78527 4128 aaKnown RBP7.46□□□□□ -1.22
HMGCS1-201ENST00000325110 CDC42SE1Q9NRR8 79 aa7.45□□□□□ -1.22
HMGCS1-201ENST00000325110 TYMSOSQ8TAI1 123 aa7.44□□□□□ -1.22
HMGCS1-201ENST00000325110 A0A1B0GU69 56 aa7.44□□□□□ -1.22
HMGCS1-201ENST00000325110 KRTAP13-2Q52LG2 175 aa7.44□□□□□ -1.22
HMGCS1-201ENST00000325110 C7orf65Q6ZTY9 151 aa7.43□□□□□ -1.22
HMGCS1-201ENST00000325110 DNAH8Q96JB1 4490 aa7.42□□□□□ -1.22
HMGCS1-201ENST00000325110 SMR3BP02814 79 aaPredicted RBP7.4□□□□□ -1.22
HMGCS1-201ENST00000325110 VPS13DQ5THJ4 4388 aa7.39□□□□□ -1.23
HMGCS1-201ENST00000325110 KTN1-AS1Q86SY8 53 aa7.39□□□□□ -1.23
HMGCS1-201ENST00000325110 Q8N1X5 172 aa7.38□□□□□ -1.23
HMGCS1-201ENST00000325110 DNAH11Q96DT5 4516 aa7.37□□□□□ -1.23
HMGCS1-201ENST00000325110 DNAH17Q9UFH2 4485 aa7.35□□□□□ -1.23
HMGCS1-201ENST00000325110 DNAH2Q9P225 4427 aa7.34□□□□□ -1.23
HMGCS1-201ENST00000325110 C9orf92A6NGG3 77 aa7.34□□□□□ -1.23
HMGCS1-201ENST00000325110 DMAC1Q96GE9 116 aa7.34□□□□□ -1.23
HMGCS1-201ENST00000325110 KRTAP13-3Q3SY46 172 aa7.33□□□□□ -1.24
HMGCS1-201ENST00000325110 HECTD4Q9Y4D8 3996 aa7.33□□□□□ -1.24
HMGCS1-201ENST00000325110 DNHD1Q96M86 4753 aa7.31□□□□□ -1.24
HMGCS1-201ENST00000325110 LINC00304Q8N9R0 145 aa7.29□□□□□ -1.24
HMGCS1-201ENST00000325110 DYNC2H1Q8NCM8 4307 aaKnown RBP7.29□□□□□ -1.24
HMGCS1-201ENST00000325110 A6NN06 94 aa7.28□□□□□ -1.24
HMGCS1-201ENST00000325110 DNAH6Q9C0G6 4158 aa7.28□□□□□ -1.24
HMGCS1-201ENST00000325110 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
HMGCS1-201ENST00000325110 PRAC1Q96KF2 57 aa7.27□□□□□ -1.25
HMGCS1-201ENST00000325110 KRTAP1-4P0C5Y4 121 aa7.27□□□□□ -1.25
HMGCS1-201ENST00000325110 MIR22HGQ0VDD5 57 aa7.26□□□□□ -1.25
HMGCS1-201ENST00000325110 UQCR11O14957 56 aa7.25□□□□□ -1.25
HMGCS1-201ENST00000325110 LRP1BQ9NZR2 4599 aa7.24□□□□□ -1.25
HMGCS1-201ENST00000325110 Q6ZSA8 131 aa7.23□□□□□ -1.25
HMGCS1-201ENST00000325110 KRTAP16-1A8MUX0 517 aa7.22□□□□□ -1.25
HMGCS1-201ENST00000325110 DMBT1Q9UGM3 2413 aaPredicted RBP7.21□□□□□ -1.26
HMGCS1-201ENST00000325110 ADM2Q7Z4H4 148 aa7.19□□□□□ -1.26
HMGCS1-201ENST00000325110 DNAH5Q8TE73 4624 aa7.15□□□□□ -1.26
HMGCS1-201ENST00000325110 FLG2Q5D862 2391 aaPredicted RBP7.14□□□□□ -1.27
HMGCS1-201ENST00000325110 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
HMGCS1-201ENST00000325110 SPATA8Q6RVD6 105 aa7.09□□□□□ -1.27
HMGCS1-201ENST00000325110 HYDINQ4G0P3 5121 aa7.08□□□□□ -1.28
HMGCS1-201ENST00000325110 VPS13BQ7Z7G8 4022 aa7.07□□□□□ -1.28
HMGCS1-201ENST00000325110 FAT1Q14517 4588 aa7.02□□□□□ -1.29
HMGCS1-201ENST00000325110 CSAG1Q6PB30 78 aa6.99□□□□□ -1.29
HMGCS1-201ENST00000325110 A0A1B0GU33 70 aa6.98□□□□□ -1.29
HMGCS1-201ENST00000325110 PKHD1P08F94 4074 aa6.97□□□□□ -1.29
HMGCS1-201ENST00000325110 A8MUU9 505 aa6.92□□□□□ -1.3
HMGCS1-201ENST00000325110 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
HMGCS1-201ENST00000325110 LINC01554Q52M75 96 aa6.92□□□□□ -1.3
HMGCS1-201ENST00000325110 FAT2Q9NYQ8 4349 aa6.91□□□□□ -1.3
HMGCS1-201ENST00000325110 K7ERS5 55 aa6.91□□□□□ -1.3
HMGCS1-201ENST00000325110 RPS29P62273 56 aaKnown RBP6.91□□□□□ -1.3
HMGCS1-201ENST00000325110 C20orf166-AS1Q96NR2 134 aa6.91□□□□□ -1.3
HMGCS1-201ENST00000325110 PKD1P98161 4303 aa6.89□□□□□ -1.31
HMGCS1-201ENST00000325110 H0YAA0 97 aa6.89□□□□□ -1.31
HMGCS1-201ENST00000325110 DYNC1H1Q14204 4646 aaKnown RBP6.89□□□□□ -1.31
HMGCS1-201ENST00000325110 A0A0D9SG42 100 aa6.88□□□□□ -1.31
HMGCS1-201ENST00000325110 KRTAP3-1Q9BYR8 98 aa6.88□□□□□ -1.31
HMGCS1-201ENST00000325110 H1FX-AS1Q4G0G2 97 aa6.86□□□□□ -1.31
HMGCS1-201ENST00000325110 COX6B2Q6YFQ2 88 aa6.85□□□□□ -1.31
HMGCS1-201ENST00000325110 Q5VSD8 79 aa6.79□□□□□ -1.32
HMGCS1-201ENST00000325110 SACSQ9NZJ4 4579 aa6.78□□□□□ -1.32
HMGCS1-201ENST00000325110 A0A1B0GVY2 172 aa6.77□□□□□ -1.33
HMGCS1-201ENST00000325110 MYCBP2O75592 4640 aa6.76□□□□□ -1.33
HMGCS1-201ENST00000325110 KRTAP10-4P60372 401 aaPredicted RBP6.74□□□□□ -1.33
HMGCS1-201ENST00000325110 LRP1Q07954 4544 aaKnown RBP6.72□□□□□ -1.33
HMGCS1-201ENST00000325110 S4R3F8 94 aa6.7□□□□□ -1.34
HMGCS1-201ENST00000325110 APOBP04114 4563 aaKnown RBP6.68□□□□□ -1.34
HMGCS1-201ENST00000325110 RPL37P61927 97 aaKnown RBP6.66□□□□□ -1.34
HMGCS1-201ENST00000325110 KRTAP25-1Q3LHN0 102 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms