RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 SRRM2Q9UQ35 2752 aaKnown RBP9.66□□□□□ -0.86
USH1C-202ENST00000318024 PKHD1P08F94 4074 aa9.64□□□□□ -0.87
USH1C-202ENST00000318024 MMP24-AS1A0A0U1RRL7 71 aa9.64□□□□□ -0.87
USH1C-202ENST00000318024 LIMD2Q9BT23 127 aa9.63□□□□□ -0.87
USH1C-202ENST00000318024 NDUFS5O43920 106 aa9.62□□□□□ -0.87
USH1C-202ENST00000318024 ASB16-AS1Q495Z4 193 aa9.62□□□□□ -0.87
USH1C-202ENST00000318024 PLAC8Q9NZF1 115 aa9.62□□□□□ -0.87
USH1C-202ENST00000318024 KRTAP10-1P60331 282 aa9.61□□□□□ -0.87
USH1C-202ENST00000318024 IGLV7-46A0A075B6I9 117 aa9.6□□□□□ -0.87
USH1C-202ENST00000318024 LOC101927531A0A1B0GV80 90 aa9.58□□□□□ -0.88
USH1C-202ENST00000318024 CIRBP-AS1Q8TBR5 109 aa9.58□□□□□ -0.88
USH1C-202ENST00000318024 Q96NJ1 140 aa9.57□□□□□ -0.88
USH1C-202ENST00000318024 COA5Q86WW8 74 aa9.56□□□□□ -0.88
USH1C-202ENST00000318024 KRTAP13-1Q8IUC0 172 aa9.56□□□□□ -0.88
USH1C-202ENST00000318024 PSORS1C2Q9UIG4 136 aa9.56□□□□□ -0.88
USH1C-202ENST00000318024 LRP1BQ9NZR2 4599 aa9.56□□□□□ -0.88
USH1C-202ENST00000318024 CHKB-CPT1BH3BT56 60 aa9.55□□□□□ -0.88
USH1C-202ENST00000318024 Q75L30 129 aa9.55□□□□□ -0.88
USH1C-202ENST00000318024 PRR15LQ9BU68 103 aa9.54□□□□□ -0.88
USH1C-202ENST00000318024 RYR3Q15413 4870 aa9.53□□□□□ -0.88
USH1C-202ENST00000318024 LCA10Q71F78 164 aa9.52□□□□□ -0.88
USH1C-202ENST00000318024 Q6ZSA8 131 aa9.51□□□□□ -0.89
USH1C-202ENST00000318024 H3BS24 57 aa9.51□□□□□ -0.89
USH1C-202ENST00000318024 DYNC1H1Q14204 4646 aaKnown RBP9.5□□□□□ -0.89
USH1C-202ENST00000318024 TP53AIP1Q9HCN2 124 aa9.49□□□□□ -0.89
USH1C-202ENST00000318024 C8orf87E5RJ46 101 aa9.48□□□□□ -0.89
USH1C-202ENST00000318024 MOBPQ13875 183 aa9.48□□□□□ -0.89
USH1C-202ENST00000318024 C8orf17Q9NRJ1 99 aa9.46□□□□□ -0.89
USH1C-202ENST00000318024 A0A1B0GVY2 172 aa9.46□□□□□ -0.9
USH1C-202ENST00000318024 PCOTHQ58A44 107 aa9.46□□□□□ -0.9
USH1C-202ENST00000318024 LINC01558Q9Y6Z2 57 aa9.46□□□□□ -0.9
USH1C-202ENST00000318024 ATP11AUNQ6ZP68 121 aa9.45□□□□□ -0.9
USH1C-202ENST00000318024 VPS13BQ7Z7G8 4022 aa9.45□□□□□ -0.9
USH1C-202ENST00000318024 ZNF861PO60384 105 aa9.43□□□□□ -0.9
USH1C-202ENST00000318024 LINC00483Q53H64 154 aa9.42□□□□□ -0.9
USH1C-202ENST00000318024 IGLV7-43P04211 117 aa9.41□□□□□ -0.9
USH1C-202ENST00000318024 CDC42SE1Q9NRR8 79 aa9.4□□□□□ -0.9
USH1C-202ENST00000318024 ANAPC11Q9NYG5 84 aa9.4□□□□□ -0.9
USH1C-202ENST00000318024 A6NED7 52 aa9.4□□□□□ -0.91
USH1C-202ENST00000318024 A6NN06 94 aa9.4□□□□□ -0.91
USH1C-202ENST00000318024 A0A1B0GVX0 72 aa9.39□□□□□ -0.91
USH1C-202ENST00000318024 C7orf65Q6ZTY9 151 aa9.39□□□□□ -0.91
USH1C-202ENST00000318024 HRES1P13985 223 aa9.38□□□□□ -0.91
USH1C-202ENST00000318024 IGLV9-49A0A0B4J1Y8 123 aa9.37□□□□□ -0.91
USH1C-202ENST00000318024 APOBP04114 4563 aaKnown RBP9.37□□□□□ -0.91
USH1C-202ENST00000318024 SPAG11AQ6PDA7 123 aa9.36□□□□□ -0.91
USH1C-202ENST00000318024 SPTSSBQ8NFR3 76 aa9.35□□□□□ -0.91
USH1C-202ENST00000318024 MRPL34Q9BQ48 92 aaKnown RBP9.35□□□□□ -0.91
USH1C-202ENST00000318024 A0A087X002 238 aa9.35□□□□□ -0.91
USH1C-202ENST00000318024 SMR3BP02814 79 aaPredicted RBP9.35□□□□□ -0.91
USH1C-202ENST00000318024 NOTCH2NLQ7Z3S9 236 aa9.35□□□□□ -0.91
USH1C-202ENST00000318024 IGHV6-1A0A0B4J1U7 121 aa9.34□□□□□ -0.91
USH1C-202ENST00000318024 FAT1Q14517 4588 aa9.33□□□□□ -0.92
USH1C-202ENST00000318024 KRTAP13-3Q3SY46 172 aa9.32□□□□□ -0.92
USH1C-202ENST00000318024 ZNF706Q9Y5V0 76 aaPredicted RBP9.31□□□□□ -0.92
USH1C-202ENST00000318024 SPINK7P58062 85 aa9.29□□□□□ -0.92
USH1C-202ENST00000318024 PRR26Q8N8Z3 221 aa9.27□□□□□ -0.93
USH1C-202ENST00000318024 Q5W150 140 aa9.26□□□□□ -0.93
USH1C-202ENST00000318024 CDK2AP2O75956 126 aa9.23□□□□□ -0.93
USH1C-202ENST00000318024 EPPK1P58107 5090 aaKnown RBP9.19□□□□□ -0.94
USH1C-202ENST00000318024 KRTAP1-4P0C5Y4 121 aa9.16□□□□□ -0.94
USH1C-202ENST00000318024 HSPG2P98160 4391 aa9.15□□□□□ -0.94
USH1C-202ENST00000318024 PLA2G1BP04054 148 aaKnown RBP9.13□□□□□ -0.95
USH1C-202ENST00000318024 KRTAP13-2Q52LG2 175 aa9.13□□□□□ -0.95
USH1C-202ENST00000318024 ACYP2P14621 99 aa9.13□□□□□ -0.95
USH1C-202ENST00000318024 KRTAP10-4P60372 401 aaPredicted RBP9.12□□□□□ -0.95
USH1C-202ENST00000318024 DMAC1Q96GE9 116 aa9.12□□□□□ -0.95
USH1C-202ENST00000318024 RYR1P21817 5038 aa9.12□□□□□ -0.95
USH1C-202ENST00000318024 SPINK6Q6UWN8 80 aa9.12□□□□□ -0.95
USH1C-202ENST00000318024 LINC01554Q52M75 96 aa9.11□□□□□ -0.95
USH1C-202ENST00000318024 KIAA1109Q2LD37 5005 aa9.1□□□□□ -0.95
USH1C-202ENST00000318024 SSBP3-AS1Q7Z2R9 100 aa9.07□□□□□ -0.96
USH1C-202ENST00000318024 LINC00313P59037 77 aa9.04□□□□□ -0.96
USH1C-202ENST00000318024 FAM229AH3BQW9 127 aa9.04□□□□□ -0.96
USH1C-202ENST00000318024 TYMSOSQ8TAI1 123 aa9.03□□□□□ -0.96
USH1C-202ENST00000318024 KRTAP17-1Q9BYP8 105 aa9.03□□□□□ -0.96
USH1C-202ENST00000318024 IGKV2-30P06310 120 aa9.01□□□□□ -0.97
USH1C-202ENST00000318024 Q5VSD8 79 aa9.01□□□□□ -0.97
USH1C-202ENST00000318024 SPATA8Q6RVD6 105 aa8.99□□□□□ -0.97
USH1C-202ENST00000318024 LRP1Q07954 4544 aaKnown RBP8.97□□□□□ -0.97
USH1C-202ENST00000318024 KRTAP16-1A8MUX0 517 aa8.97□□□□□ -0.97
USH1C-202ENST00000318024 PKHD1L1Q86WI1 4243 aa8.95□□□□□ -0.98
USH1C-202ENST00000318024 A0A1B0GU69 56 aa8.95□□□□□ -0.98
USH1C-202ENST00000318024 PRAC1Q96KF2 57 aa8.92□□□□□ -0.98
USH1C-202ENST00000318024 ADM2Q7Z4H4 148 aa8.91□□□□□ -0.98
USH1C-202ENST00000318024 RETNLBQ9BQ08 111 aa8.91□□□□□ -0.98
USH1C-202ENST00000318024 LINC00304Q8N9R0 145 aa8.89□□□□□ -0.99
USH1C-202ENST00000318024 MYCBP2O75592 4640 aa8.87□□□□□ -0.99
USH1C-202ENST00000318024 SPINK1P00995 79 aa8.86□□□□□ -0.99
USH1C-202ENST00000318024 FLG2Q5D862 2391 aaPredicted RBP8.86□□□□□ -0.99
USH1C-202ENST00000318024 MIR22HGQ0VDD5 57 aa8.85□□□□□ -0.99
USH1C-202ENST00000318024 Q8N1X5 172 aa8.85□□□□□ -0.99
USH1C-202ENST00000318024 TNXBP22105 4242 aa8.85□□□□□ -0.99
USH1C-202ENST00000318024 UQCR11O14957 56 aa8.85□□□□□ -0.99
USH1C-202ENST00000318024 FAT3Q8TDW7 4589 aa8.83□□□□□ -1
USH1C-202ENST00000318024 IGKV2D-30A0A075B6S6 120 aa8.8□□□□□ -1
USH1C-202ENST00000318024 KRTAP4-5Q9BYR2 181 aa8.77□□□□□ -1.01
USH1C-202ENST00000318024 KRTAP10-8P60410 259 aa8.74□□□□□ -1.01
USH1C-202ENST00000318024 RPS29P62273 56 aaKnown RBP8.73□□□□□ -1.01
USH1C-202ENST00000318024 BIRC6Q9NR09 4857 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms