RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 C9orf118A6NHY6 69 aa8.54□□□□□ -1.04
LSM1-201ENST00000311351 C21orf62-AS1Q17RA5 79 aa8.54□□□□□ -1.04
LSM1-201ENST00000311351 ATP11AUNQ6ZP68 121 aa8.54□□□□□ -1.04
LSM1-201ENST00000311351 JMJD7-PLA2G4BH0Y9G9 81 aa8.53□□□□□ -1.04
LSM1-201ENST00000311351 DSCR10P59022 87 aa8.53□□□□□ -1.04
LSM1-201ENST00000311351 C9JAW5 83 aa8.52□□□□□ -1.05
LSM1-201ENST00000311351 COX6B2Q6YFQ2 88 aa8.52□□□□□ -1.05
LSM1-201ENST00000311351 C20orf166-AS1Q96NR2 134 aa8.51□□□□□ -1.05
LSM1-201ENST00000311351 VPS25Q9BRG1 176 aa8.51□□□□□ -1.05
LSM1-201ENST00000311351 TAX1BP3O14907 124 aa8.5□□□□□ -1.05
LSM1-201ENST00000311351 FLGP20930 4061 aaPredicted RBP8.5□□□□□ -1.05
LSM1-201ENST00000311351 A0A1W2PPM0 123 aa8.49□□□□□ -1.05
LSM1-201ENST00000311351 A8MUU9 505 aa8.49□□□□□ -1.05
LSM1-201ENST00000311351 IGKV4-1P06312 121 aa8.49□□□□□ -1.05
LSM1-201ENST00000311351 PDE6GP18545 87 aa8.49□□□□□ -1.05
LSM1-201ENST00000311351 KRTAP4-2Q9BYR5 136 aa8.48□□□□□ -1.05
LSM1-201ENST00000311351 DEFB116Q30KQ4 102 aa8.47□□□□□ -1.05
LSM1-201ENST00000311351 A0A1B0GW54 56 aa8.46□□□□□ -1.06
LSM1-201ENST00000311351 LOC110117498A0A087WWA1 95 aa8.45□□□□□ -1.06
LSM1-201ENST00000311351 COL5A1-AS1Q5SY13 56 aa8.45□□□□□ -1.06
LSM1-201ENST00000311351 LINC00472Q9H8W2 130 aa8.45□□□□□ -1.06
LSM1-201ENST00000311351 H3BT86 120 aa8.44□□□□□ -1.06
LSM1-201ENST00000311351 KRTAP16-1A8MUX0 517 aa8.43□□□□□ -1.06
LSM1-201ENST00000311351 M0R2T5 61 aa8.43□□□□□ -1.06
LSM1-201ENST00000311351 KRTAP10-6P60371 365 aaPredicted RBP8.43□□□□□ -1.06
LSM1-201ENST00000311351 NOTCH2NLQ7Z3S9 236 aa8.43□□□□□ -1.06
LSM1-201ENST00000311351 LINC00313P59037 77 aa8.42□□□□□ -1.06
LSM1-201ENST00000311351 Q6ZQT0 140 aa8.42□□□□□ -1.06
LSM1-201ENST00000311351 SPCS1Q9Y6A9 102 aa8.4□□□□□ -1.06
LSM1-201ENST00000311351 IGHV6-1A0A0B4J1U7 121 aa8.39□□□□□ -1.07
LSM1-201ENST00000311351 J3KT08 172 aa8.39□□□□□ -1.07
LSM1-201ENST00000311351 C14orf132Q9NPU4 83 aa8.39□□□□□ -1.07
LSM1-201ENST00000311351 A0A1B0GVX0 72 aa8.34□□□□□ -1.07
LSM1-201ENST00000311351 PCP4L1A6NKN8 68 aa8.33□□□□□ -1.08
LSM1-201ENST00000311351 MTURNQ8N3F0 131 aa8.33□□□□□ -1.08
LSM1-201ENST00000311351 C8orf87E5RJ46 101 aa8.32□□□□□ -1.08
LSM1-201ENST00000311351 NDUFB1O75438 58 aa8.32□□□□□ -1.08
LSM1-201ENST00000311351 FSIP2Q5CZC0 6907 aa8.31□□□□□ -1.08
LSM1-201ENST00000311351 K7EP34 96 aa8.29□□□□□ -1.08
LSM1-201ENST00000311351 NREPQ16612 68 aa8.29□□□□□ -1.08
LSM1-201ENST00000311351 GTF2H5Q6ZYL4 71 aa8.28□□□□□ -1.08
LSM1-201ENST00000311351 A8MWP4 228 aa8.25□□□□□ -1.09
LSM1-201ENST00000311351 HRES1P13985 223 aa8.23□□□□□ -1.09
LSM1-201ENST00000311351 CRCT1Q9UGL9 99 aa8.23□□□□□ -1.09
LSM1-201ENST00000311351 FAM236DA0A1B0GTK5 79 aa8.21□□□□□ -1.1
LSM1-201ENST00000311351 FAM236CP0DP71 79 aa8.21□□□□□ -1.1
LSM1-201ENST00000311351 KRTAP4-11Q9BYQ6 195 aa8.21□□□□□ -1.1
LSM1-201ENST00000311351 PRO0461Q9UI25 63 aa8.21□□□□□ -1.1
LSM1-201ENST00000311351 LCE4AQ5TA78 99 aa8.2□□□□□ -1.1
LSM1-201ENST00000311351 MPLKIPQ8TAP9 179 aa8.2□□□□□ -1.1
LSM1-201ENST00000311351 IGKV3D-7A0A0C4DH55 119 aa8.19□□□□□ -1.1
LSM1-201ENST00000311351 ZCCHC13Q8WW36 166 aaKnown RBP8.19□□□□□ -1.1
LSM1-201ENST00000311351 C8orf17Q9NRJ1 99 aa8.19□□□□□ -1.1
LSM1-201ENST00000311351 F8W1H4 67 aa8.18□□□□□ -1.1
LSM1-201ENST00000311351 PRR15Q8IV56 129 aa8.17□□□□□ -1.1
LSM1-201ENST00000311351 BPY2O14599 106 aa8.16□□□□□ -1.1
LSM1-201ENST00000311351 Q8N9P0 234 aaPredicted RBP8.16□□□□□ -1.1
LSM1-201ENST00000311351 RBM12B-AS1Q9P1G2 102 aa8.16□□□□□ -1.1
LSM1-201ENST00000311351 KRTAP9-8Q9BYQ0 159 aa8.13□□□□□ -1.11
LSM1-201ENST00000311351 Q6ZVQ6 151 aa8.12□□□□□ -1.11
LSM1-201ENST00000311351 UBL5Q9BZL1 73 aa8.12□□□□□ -1.11
LSM1-201ENST00000311351 SPINK7P58062 85 aa8.11□□□□□ -1.11
LSM1-201ENST00000311351 MMP24-AS1A0A0U1RRL7 71 aa8.09□□□□□ -1.11
LSM1-201ENST00000311351 K7EQZ3 153 aa8.09□□□□□ -1.11
LSM1-201ENST00000311351 TMEM254Q8TBM7 123 aa8.08□□□□□ -1.12
LSM1-201ENST00000311351 ETDBQ3ZM63 59 aa8.07□□□□□ -1.12
LSM1-201ENST00000311351 hDV103S1A0JD37 113 aa8.06□□□□□ -1.12
LSM1-201ENST00000311351 MRPL34Q9BQ48 92 aaKnown RBP8.06□□□□□ -1.12
LSM1-201ENST00000311351 LINC00846Q9NV44 126 aa8.06□□□□□ -1.12
LSM1-201ENST00000311351 MT2AP02795 61 aa8.04□□□□□ -1.12
LSM1-201ENST00000311351 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
LSM1-201ENST00000311351 USH2AO75445 5202 aa8.03□□□□□ -1.12
LSM1-201ENST00000311351 NDUFS5O43920 106 aa8□□□□□ -1.13
LSM1-201ENST00000311351 MT1FP04733 61 aa7.98□□□□□ -1.13
LSM1-201ENST00000311351 CASC2Q6XLA1 102 aa7.98□□□□□ -1.13
LSM1-201ENST00000311351 Q8N9L7 120 aa7.98□□□□□ -1.13
LSM1-201ENST00000311351 ACYP1P07311 99 aa7.96□□□□□ -1.14
LSM1-201ENST00000311351 CXCL6P80162 114 aa7.96□□□□□ -1.14
LSM1-201ENST00000311351 SSPOA2VEC9 5147 aa7.95□□□□□ -1.14
LSM1-201ENST00000311351 HCG22E2RYF7 251 aa7.93□□□□□ -1.14
LSM1-201ENST00000311351 FAM240AA0A1B0GVK7 77 aa7.92□□□□□ -1.14
LSM1-201ENST00000311351 KRTAP9-7A8MTY7 169 aa7.91□□□□□ -1.14
LSM1-201ENST00000311351 KRTAP10-10P60014 251 aa7.9□□□□□ -1.14
LSM1-201ENST00000311351 Q5W150 140 aa7.9□□□□□ -1.14
LSM1-201ENST00000311351 IGKV2D-30A0A075B6S6 120 aa7.88□□□□□ -1.15
LSM1-201ENST00000311351 IGKV2-30P06310 120 aa7.88□□□□□ -1.15
LSM1-201ENST00000311351 KRTAP9-3Q9BYQ3 159 aa7.87□□□□□ -1.15
LSM1-201ENST00000311351 A0A1B0GV90 55 aa7.86□□□□□ -1.15
LSM1-201ENST00000311351 ATP5EP2Q5VTU8 51 aa7.86□□□□□ -1.15
LSM1-201ENST00000311351 LCE5AQ5TCM9 118 aa7.85□□□□□ -1.15
LSM1-201ENST00000311351 C7orf65Q6ZTY9 151 aa7.84□□□□□ -1.15
LSM1-201ENST00000311351 TP53AIP1Q9HCN2 124 aa7.82□□□□□ -1.16
LSM1-201ENST00000311351 H1FX-AS1Q4G0G2 97 aa7.81□□□□□ -1.16
LSM1-201ENST00000311351 KRTAP5-3Q6L8H2 238 aa7.76□□□□□ -1.17
LSM1-201ENST00000311351 J3QR89 54 aa7.75□□□□□ -1.17
LSM1-201ENST00000311351 LINC00643Q86TS7 51 aa7.75□□□□□ -1.17
LSM1-201ENST00000311351 FCGBPQ9Y6R7 5405 aaPredicted RBP7.74□□□□□ -1.17
LSM1-201ENST00000311351 HIST1H4AP62805 103 aaKnown RBP7.73□□□□□ -1.17
LSM1-201ENST00000311351 C4orf26Q17RF5 130 aa7.73□□□□□ -1.17
LSM1-201ENST00000311351 TRAV22A0A0B4J277 110 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms