RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 LINC00483Q53H64 154 aa9.3□□□□□ -0.92
LEMD3-201ENST00000308330 DCHS1Q96JQ0 3298 aa9.29□□□□□ -0.92
LEMD3-201ENST00000308330 LINC00472Q9H8W2 130 aa9.29□□□□□ -0.92
LEMD3-201ENST00000308330 FBN2P35556 2912 aa9.29□□□□□ -0.92
LEMD3-201ENST00000308330 C9orf92A6NGG3 77 aa9.27□□□□□ -0.93
LEMD3-201ENST00000308330 COX6B2Q6YFQ2 88 aa9.25□□□□□ -0.93
LEMD3-201ENST00000308330 CAMK2N1Q7Z7J9 78 aa9.23□□□□□ -0.93
LEMD3-201ENST00000308330 TENM3Q9P273 2699 aa9.21□□□□□ -0.93
LEMD3-201ENST00000308330 HRNRQ86YZ3 2850 aaPredicted RBP9.19□□□□□ -0.94
LEMD3-201ENST00000308330 KRTAP21-3Q3LHN1 58 aa9.18□□□□□ -0.94
LEMD3-201ENST00000308330 MXRA5Q9NR99 2828 aa9.18□□□□□ -0.94
LEMD3-201ENST00000308330 PLAC8Q9NZF1 115 aa9.17□□□□□ -0.94
LEMD3-201ENST00000308330 RPL37P61927 97 aaKnown RBP9.17□□□□□ -0.94
LEMD3-201ENST00000308330 Q5W150 140 aa9.16□□□□□ -0.94
LEMD3-201ENST00000308330 SPRR1AP35321 89 aa9.14□□□□□ -0.95
LEMD3-201ENST00000308330 KRTAP10-2P60368 255 aa9.14□□□□□ -0.95
LEMD3-201ENST00000308330 NOTCH2NLQ7Z3S9 236 aa9.13□□□□□ -0.95
LEMD3-201ENST00000308330 MUC3AQ02505 3323 aa9.13□□□□□ -0.95
LEMD3-201ENST00000308330 H1FX-AS1Q4G0G2 97 aa9.12□□□□□ -0.95
LEMD3-201ENST00000308330 KRTAP10-1P60331 282 aa9.12□□□□□ -0.95
LEMD3-201ENST00000308330 PKD1L1Q8TDX9 2849 aa9.1□□□□□ -0.95
LEMD3-201ENST00000308330 TENM1Q9UKZ4 2725 aa9.08□□□□□ -0.96
LEMD3-201ENST00000308330 KRTAP26-1Q6PEX3 210 aa9.08□□□□□ -0.96
LEMD3-201ENST00000308330 RELNP78509 3460 aa9.07□□□□□ -0.96
LEMD3-201ENST00000308330 Q5VSD8 79 aa9.05□□□□□ -0.96
LEMD3-201ENST00000308330 PANO1I0J062 215 aa9.05□□□□□ -0.96
LEMD3-201ENST00000308330 KRTAP11-1Q8IUC1 163 aa9.05□□□□□ -0.96
LEMD3-201ENST00000308330 TENM2Q9NT68 2774 aa8.97□□□□□ -0.97
LEMD3-201ENST00000308330 SPRR1BP22528 89 aa8.97□□□□□ -0.97
LEMD3-201ENST00000308330 KRTAP4-16G5E9R7 235 aaPredicted RBP8.95□□□□□ -0.98
LEMD3-201ENST00000308330 Q6ZSA8 131 aa8.95□□□□□ -0.98
LEMD3-201ENST00000308330 LAMA5O15230 3695 aa8.92□□□□□ -0.98
LEMD3-201ENST00000308330 CELSR1Q9NYQ6 3014 aa8.88□□□□□ -0.99
LEMD3-201ENST00000308330 FBN1P35555 2871 aaKnown RBP8.85□□□□□ -0.99
LEMD3-201ENST00000308330 Q6ZRN7 208 aaPredicted RBP8.84□□□□□ -0.99
LEMD3-201ENST00000308330 OTOGQ6ZRI0 2925 aa8.82□□□□□ -1
LEMD3-201ENST00000308330 VWFP04275 2813 aa8.81□□□□□ -1
LEMD3-201ENST00000308330 ASPMQ8IZT6 3477 aa8.81□□□□□ -1
LEMD3-201ENST00000308330 PDZD2O15018 2839 aa8.79□□□□□ -1
LEMD3-201ENST00000308330 M0R2T5 61 aa8.79□□□□□ -1
LEMD3-201ENST00000308330 ZFHX3Q15911 3703 aa8.76□□□□□ -1.01
LEMD3-201ENST00000308330 WDFY3Q8IZQ1 3526 aa8.75□□□□□ -1.01
LEMD3-201ENST00000308330 TGP01266 2768 aa8.7□□□□□ -1.02
LEMD3-201ENST00000308330 P0C880 135 aa8.69□□□□□ -1.02
LEMD3-201ENST00000308330 C10orf95Q9H7T3 257 aa8.68□□□□□ -1.02
LEMD3-201ENST00000308330 SRRM2Q9UQ35 2752 aaKnown RBP8.67□□□□□ -1.02
LEMD3-201ENST00000308330 DMDP11532 3685 aa8.67□□□□□ -1.02
LEMD3-201ENST00000308330 PLAC4Q8WY50 150 aa8.67□□□□□ -1.02
LEMD3-201ENST00000308330 H0YAA0 97 aa8.62□□□□□ -1.03
LEMD3-201ENST00000308330 SMG1Q96Q15 3661 aaKnown RBP8.58□□□□□ -1.04
LEMD3-201ENST00000308330 NBPF19A0A087WUL8 3843 aa8.57□□□□□ -1.04
LEMD3-201ENST00000308330 KRTAP7-1Q8IUC3 87 aa8.57□□□□□ -1.04
LEMD3-201ENST00000308330 S4R3F8 94 aa8.53□□□□□ -1.04
LEMD3-201ENST00000308330 ZFHX4Q86UP3 3567 aa8.49□□□□□ -1.05
LEMD3-201ENST00000308330 KRTAP13-2Q52LG2 175 aa8.44□□□□□ -1.06
LEMD3-201ENST00000308330 KRTAP13-1Q8IUC0 172 aa8.41□□□□□ -1.06
LEMD3-201ENST00000308330 R4GN34 69 aa8.41□□□□□ -1.06
LEMD3-201ENST00000308330 RPS29P62273 56 aaKnown RBP8.35□□□□□ -1.07
LEMD3-201ENST00000308330 CSMD2Q7Z408 3487 aa8.33□□□□□ -1.08
LEMD3-201ENST00000308330 M0QZ58 72 aa8.31□□□□□ -1.08
LEMD3-201ENST00000308330 CSMD1Q96PZ7 3565 aa8.29□□□□□ -1.08
LEMD3-201ENST00000308330 TPRXLQ17RH7 258 aa8.26□□□□□ -1.09
LEMD3-201ENST00000308330 CUBNO60494 3623 aa8.24□□□□□ -1.09
LEMD3-201ENST00000308330 KRTAP15-1Q3LI76 137 aa8.23□□□□□ -1.09
LEMD3-201ENST00000308330 KRTAP1-4P0C5Y4 121 aa8.17□□□□□ -1.1
LEMD3-201ENST00000308330 FBN3Q75N90 2809 aa8.16□□□□□ -1.1
LEMD3-201ENST00000308330 PP632Q6XCG6 107 aa8.15□□□□□ -1.1
LEMD3-201ENST00000308330 KRTAP10-8P60410 259 aa8.11□□□□□ -1.11
LEMD3-201ENST00000308330 SVEP1Q4LDE5 3571 aa8.08□□□□□ -1.12
LEMD3-201ENST00000308330 KRTAP13-3Q3SY46 172 aa8.06□□□□□ -1.12
LEMD3-201ENST00000308330 COL7A1Q02388 2944 aa8.06□□□□□ -1.12
LEMD3-201ENST00000308330 SPENQ96T58 3664 aaKnown RBP8.05□□□□□ -1.12
LEMD3-201ENST00000308330 A0A1B0GVY2 172 aa8.04□□□□□ -1.12
LEMD3-201ENST00000308330 TRRAPQ9Y4A5 3859 aa8.02□□□□□ -1.13
LEMD3-201ENST00000308330 XP32Q5T750 250 aa7.96□□□□□ -1.13
LEMD3-201ENST00000308330 ANK3Q12955 4377 aaKnown RBP7.91□□□□□ -1.14
LEMD3-201ENST00000308330 PRO2289Q9P1D8 64 aa7.89□□□□□ -1.15
LEMD3-201ENST00000308330 MEGF8Q7Z7M0 2845 aa7.88□□□□□ -1.15
LEMD3-201ENST00000308330 TNP1P09430 55 aa7.87□□□□□ -1.15
LEMD3-201ENST00000308330 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
LEMD3-201ENST00000308330 INE1O15225 51 aa7.76□□□□□ -1.17
LEMD3-201ENST00000308330 BSNQ9UPA5 3926 aa7.75□□□□□ -1.17
LEMD3-201ENST00000308330 KRTAP12-1P59990 96 aa7.62□□□□□ -1.19
LEMD3-201ENST00000308330 KRTAP10-10P60014 251 aa7.59□□□□□ -1.19
LEMD3-201ENST00000308330 KRTAP13-4Q3LI77 160 aa7.51□□□□□ -1.21
LEMD3-201ENST00000308330 DNHD1Q96M86 4753 aa7.47□□□□□ -1.21
LEMD3-201ENST00000308330 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
LEMD3-201ENST00000308330 KRTAP10-6P60371 365 aaPredicted RBP7.41□□□□□ -1.22
LEMD3-201ENST00000308330 KRTAP23-1A1A580 65 aa7.4□□□□□ -1.22
LEMD3-201ENST00000308330 KRTAP4-5Q9BYR2 181 aa7.39□□□□□ -1.23
LEMD3-201ENST00000308330 ZNF469Q96JG9 3925 aaPredicted RBP7.39□□□□□ -1.23
LEMD3-201ENST00000308330 MT1HL1P0DM35 61 aa7.37□□□□□ -1.23
LEMD3-201ENST00000308330 VPS13CQ709C8 3753 aa7.37□□□□□ -1.23
LEMD3-201ENST00000308330 HUWE1Q7Z6Z7 4374 aaKnown RBP7.28□□□□□ -1.24
LEMD3-201ENST00000308330 KRTAP10-4P60372 401 aaPredicted RBP7.21□□□□□ -1.25
LEMD3-201ENST00000308330 AKAP9Q99996 3911 aa7.17□□□□□ -1.26
LEMD3-201ENST00000308330 CSMD3Q7Z407 3707 aa7.11□□□□□ -1.27
LEMD3-201ENST00000308330 KRTAP3-2Q9BYR7 98 aa7.11□□□□□ -1.27
LEMD3-201ENST00000308330 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
LEMD3-201ENST00000308330 DNAH5Q8TE73 4624 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms