RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 A0A087X002 238 aa6.73□□□□□ -1.33
PCDHGC3-201ENST00000308177 MIR22HGQ0VDD5 57 aa6.73□□□□□ -1.33
PCDHGC3-201ENST00000308177 Q5W150 140 aa6.73□□□□□ -1.33
PCDHGC3-201ENST00000308177 ZCCHC13Q8WW36 166 aaKnown RBP6.73□□□□□ -1.33
PCDHGC3-201ENST00000308177 KRTAP13-1Q8IUC0 172 aa6.71□□□□□ -1.33
PCDHGC3-201ENST00000308177 FP248Q71RG6 208 aaPredicted RBP6.71□□□□□ -1.34
PCDHGC3-201ENST00000308177 NBPF19A0A087WUL8 3843 aa6.7□□□□□ -1.34
PCDHGC3-201ENST00000308177 CDC42SE1Q9NRR8 79 aa6.69□□□□□ -1.34
PCDHGC3-201ENST00000308177 KTN1-AS1Q86SY8 53 aa6.69□□□□□ -1.34
PCDHGC3-201ENST00000308177 FBN1P35555 2871 aaKnown RBP6.68□□□□□ -1.34
PCDHGC3-201ENST00000308177 RBM12B-AS1Q9P1G2 102 aa6.67□□□□□ -1.34
PCDHGC3-201ENST00000308177 OXTP01178 125 aa6.67□□□□□ -1.34
PCDHGC3-201ENST00000308177 COX6B2Q6YFQ2 88 aa6.67□□□□□ -1.34
PCDHGC3-201ENST00000308177 Q5VSD8 79 aa6.66□□□□□ -1.34
PCDHGC3-201ENST00000308177 KRTAP21-3Q3LHN1 58 aa6.66□□□□□ -1.34
PCDHGC3-201ENST00000308177 Q75L30 129 aa6.64□□□□□ -1.35
PCDHGC3-201ENST00000308177 NOTCH2NLQ7Z3S9 236 aa6.64□□□□□ -1.35
PCDHGC3-201ENST00000308177 BSNQ9UPA5 3926 aa6.63□□□□□ -1.35
PCDHGC3-201ENST00000308177 LINC01558Q9Y6Z2 57 aa6.63□□□□□ -1.35
PCDHGC3-201ENST00000308177 Q6ZSA8 131 aa6.62□□□□□ -1.35
PCDHGC3-201ENST00000308177 SPINK7P58062 85 aa6.61□□□□□ -1.35
PCDHGC3-201ENST00000308177 ASB16-AS1Q495Z4 193 aa6.61□□□□□ -1.35
PCDHGC3-201ENST00000308177 LCA10Q71F78 164 aa6.61□□□□□ -1.35
PCDHGC3-201ENST00000308177 ZFHX3Q15911 3703 aa6.6□□□□□ -1.35
PCDHGC3-201ENST00000308177 KRTAP13-2Q52LG2 175 aa6.58□□□□□ -1.36
PCDHGC3-201ENST00000308177 PKD1L1Q8TDX9 2849 aa6.57□□□□□ -1.36
PCDHGC3-201ENST00000308177 CSMD2Q7Z408 3487 aa6.57□□□□□ -1.36
PCDHGC3-201ENST00000308177 Q5VV11 94 aa6.55□□□□□ -1.36
PCDHGC3-201ENST00000308177 DMAC1Q96GE9 116 aa6.55□□□□□ -1.36
PCDHGC3-201ENST00000308177 TENM2Q9NT68 2774 aa6.54□□□□□ -1.36
PCDHGC3-201ENST00000308177 CUBNO60494 3623 aa6.53□□□□□ -1.36
PCDHGC3-201ENST00000308177 TGP01266 2768 aa6.53□□□□□ -1.36
PCDHGC3-201ENST00000308177 A0A1B0GU33 70 aa6.53□□□□□ -1.36
PCDHGC3-201ENST00000308177 A0A0D9SG42 100 aa6.52□□□□□ -1.37
PCDHGC3-201ENST00000308177 RPS29P62273 56 aaKnown RBP6.51□□□□□ -1.37
PCDHGC3-201ENST00000308177 ANK3Q12955 4377 aaKnown RBP6.5□□□□□ -1.37
PCDHGC3-201ENST00000308177 LINC01554Q52M75 96 aa6.47□□□□□ -1.37
PCDHGC3-201ENST00000308177 A0A0A0MQY5 61 aa6.47□□□□□ -1.37
PCDHGC3-201ENST00000308177 SPINT4Q6UDR6 99 aa6.46□□□□□ -1.38
PCDHGC3-201ENST00000308177 S4R3F8 94 aa6.45□□□□□ -1.38
PCDHGC3-201ENST00000308177 CSAG1Q6PB30 78 aa6.44□□□□□ -1.38
PCDHGC3-201ENST00000308177 CRIPTQ9P021 101 aa6.42□□□□□ -1.38
PCDHGC3-201ENST00000308177 SEC61BP60468 96 aaKnown RBP6.41□□□□□ -1.38
PCDHGC3-201ENST00000308177 TRRAPQ9Y4A5 3859 aa6.39□□□□□ -1.39
PCDHGC3-201ENST00000308177 KRTAP1-4P0C5Y4 121 aa6.39□□□□□ -1.39
PCDHGC3-201ENST00000308177 VPS13CQ709C8 3753 aa6.39□□□□□ -1.39
PCDHGC3-201ENST00000308177 H1FX-AS1Q4G0G2 97 aa6.29□□□□□ -1.4
PCDHGC3-201ENST00000308177 A8MUU9 505 aa6.28□□□□□ -1.4
PCDHGC3-201ENST00000308177 M0R2T5 61 aa6.27□□□□□ -1.41
PCDHGC3-201ENST00000308177 C20orf166-AS1Q96NR2 134 aa6.26□□□□□ -1.41
PCDHGC3-201ENST00000308177 R4GN34 69 aa6.26□□□□□ -1.41
PCDHGC3-201ENST00000308177 RPL37P61927 97 aaKnown RBP6.26□□□□□ -1.41
PCDHGC3-201ENST00000308177 PRAC1Q96KF2 57 aa6.25□□□□□ -1.41
PCDHGC3-201ENST00000308177 CAMK2N1Q7Z7J9 78 aa6.25□□□□□ -1.41
PCDHGC3-201ENST00000308177 SPATA8Q6RVD6 105 aa6.22□□□□□ -1.41
PCDHGC3-201ENST00000308177 ADM2Q7Z4H4 148 aa6.19□□□□□ -1.42
PCDHGC3-201ENST00000308177 FBN3Q75N90 2809 aa6.18□□□□□ -1.42
PCDHGC3-201ENST00000308177 KRTAP16-1A8MUX0 517 aa6.17□□□□□ -1.42
PCDHGC3-201ENST00000308177 M0QZ58 72 aa6.17□□□□□ -1.42
PCDHGC3-201ENST00000308177 A6NN06 94 aa6.17□□□□□ -1.42
PCDHGC3-201ENST00000308177 ZNF469Q96JG9 3925 aaPredicted RBP6.14□□□□□ -1.43
PCDHGC3-201ENST00000308177 A8MU10 97 aa6.14□□□□□ -1.43
PCDHGC3-201ENST00000308177 A0A1B0GVY2 172 aa6.13□□□□□ -1.43
PCDHGC3-201ENST00000308177 MEGF8Q7Z7M0 2845 aa6.12□□□□□ -1.43
PCDHGC3-201ENST00000308177 SRRM2Q9UQ35 2752 aaKnown RBP6.12□□□□□ -1.43
PCDHGC3-201ENST00000308177 ROMO1P60602 79 aa6.11□□□□□ -1.43
PCDHGC3-201ENST00000308177 XP32Q5T750 250 aa6.11□□□□□ -1.43
PCDHGC3-201ENST00000308177 KRTAP13-3Q3SY46 172 aa6.04□□□□□ -1.44
PCDHGC3-201ENST00000308177 AKAP9Q99996 3911 aa6.03□□□□□ -1.44
PCDHGC3-201ENST00000308177 KRTAP10-8P60410 259 aa6.01□□□□□ -1.45
PCDHGC3-201ENST00000308177 HUWE1Q7Z6Z7 4374 aaKnown RBP6□□□□□ -1.45
PCDHGC3-201ENST00000308177 COL7A1Q02388 2944 aa5.99□□□□□ -1.45
PCDHGC3-201ENST00000308177 TPRXLQ17RH7 258 aa5.99□□□□□ -1.45
PCDHGC3-201ENST00000308177 LUZP6Q538Z0 58 aa5.98□□□□□ -1.45
PCDHGC3-201ENST00000308177 KRTAP25-1Q3LHN0 102 aa5.92□□□□□ -1.46
PCDHGC3-201ENST00000308177 PLAC4Q8WY50 150 aa5.9□□□□□ -1.47
PCDHGC3-201ENST00000308177 H0YAA0 97 aa5.86□□□□□ -1.47
PCDHGC3-201ENST00000308177 DNAH9Q9NYC9 4486 aa5.82□□□□□ -1.48
PCDHGC3-201ENST00000308177 P0C880 135 aa5.77□□□□□ -1.49
PCDHGC3-201ENST00000308177 CSMD3Q7Z407 3707 aa5.76□□□□□ -1.49
PCDHGC3-201ENST00000308177 KRTAP3-1Q9BYR8 98 aa5.73□□□□□ -1.49
PCDHGC3-201ENST00000308177 PLECQ15149 4684 aaKnown RBP5.69□□□□□ -1.5
PCDHGC3-201ENST00000308177 KRTAP10-4P60372 401 aaPredicted RBP5.68□□□□□ -1.5
PCDHGC3-201ENST00000308177 TNP1P09430 55 aa5.66□□□□□ -1.5
PCDHGC3-201ENST00000308177 MT1HL1P0DM35 61 aa5.64□□□□□ -1.51
PCDHGC3-201ENST00000308177 DNHD1Q96M86 4753 aa5.64□□□□□ -1.51
PCDHGC3-201ENST00000308177 C10orf95Q9H7T3 257 aa5.63□□□□□ -1.51
PCDHGC3-201ENST00000308177 DNAH1Q9P2D7 4330 aa5.63□□□□□ -1.51
PCDHGC3-201ENST00000308177 DNAH5Q8TE73 4624 aa5.59□□□□□ -1.52
PCDHGC3-201ENST00000308177 ALMS1Q8TCU4 4167 aa5.57□□□□□ -1.52
PCDHGC3-201ENST00000308177 DNAH11Q96DT5 4516 aa5.57□□□□□ -1.52
PCDHGC3-201ENST00000308177 VPS13DQ5THJ4 4388 aa5.57□□□□□ -1.52
PCDHGC3-201ENST00000308177 KRTAP10-10P60014 251 aa5.56□□□□□ -1.52
PCDHGC3-201ENST00000308177 PP632Q6XCG6 107 aa5.56□□□□□ -1.52
PCDHGC3-201ENST00000308177 NDUFAF8A1L188 74 aa5.55□□□□□ -1.52
PCDHGC3-201ENST00000308177 DNAH10Q8IVF4 4471 aa5.55□□□□□ -1.52
PCDHGC3-201ENST00000308177 KRTAP12-2P59991 146 aa5.5□□□□□ -1.53
PCDHGC3-201ENST00000308177 STARD9Q9P2P6 4700 aa5.5□□□□□ -1.53
PCDHGC3-201ENST00000308177 DNAH17Q9UFH2 4485 aa5.5□□□□□ -1.53
PCDHGC3-201ENST00000308177 KRTAP10-6P60371 365 aaPredicted RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms