RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 C4orf26Q17RF5 130 aa5.38□□□□□ -1.55
PTPRE-202ENST00000306042 CSMD2Q7Z408 3487 aa5.37□□□□□ -1.55
PTPRE-202ENST00000306042 SPINK7P58062 85 aa5.37□□□□□ -1.55
PTPRE-202ENST00000306042 A8MUN3 132 aa5.36□□□□□ -1.55
PTPRE-202ENST00000306042 KRTAP13-2Q52LG2 175 aa5.36□□□□□ -1.55
PTPRE-202ENST00000306042 KRTAP13-1Q8IUC0 172 aa5.36□□□□□ -1.55
PTPRE-202ENST00000306042 COA5Q86WW8 74 aa5.36□□□□□ -1.55
PTPRE-202ENST00000306042 BSNQ9UPA5 3926 aa5.35□□□□□ -1.55
PTPRE-202ENST00000306042 KRTAP29-1A8MX34 341 aaPredicted RBP5.31□□□□□ -1.56
PTPRE-202ENST00000306042 LINC01554Q52M75 96 aa5.31□□□□□ -1.56
PTPRE-202ENST00000306042 KLKP1Q107X0 134 aa5.31□□□□□ -1.56
PTPRE-202ENST00000306042 A0A1B0GVY2 172 aa5.3□□□□□ -1.56
PTPRE-202ENST00000306042 ANK3Q12955 4377 aaKnown RBP5.3□□□□□ -1.56
PTPRE-202ENST00000306042 Q5W150 140 aa5.29□□□□□ -1.56
PTPRE-202ENST00000306042 OCR1Q9BZK8 76 aa5.29□□□□□ -1.56
PTPRE-202ENST00000306042 ASB16-AS1Q495Z4 193 aa5.29□□□□□ -1.56
PTPRE-202ENST00000306042 Q8N9P0 234 aaPredicted RBP5.28□□□□□ -1.56
PTPRE-202ENST00000306042 S4R3F8 94 aa5.27□□□□□ -1.57
PTPRE-202ENST00000306042 CYP4F30PQ9H0H9 118 aa5.27□□□□□ -1.57
PTPRE-202ENST00000306042 SPANXA2-OT1Q8N9U9 137 aa5.26□□□□□ -1.57
PTPRE-202ENST00000306042 PMAIP1Q13794 54 aa5.26□□□□□ -1.57
PTPRE-202ENST00000306042 Q5XG85 94 aa5.26□□□□□ -1.57
PTPRE-202ENST00000306042 FBN3Q75N90 2809 aa5.25□□□□□ -1.57
PTPRE-202ENST00000306042 SVEP1Q4LDE5 3571 aa5.24□□□□□ -1.57
PTPRE-202ENST00000306042 PRO0628Q9UI54 55 aa5.24□□□□□ -1.57
PTPRE-202ENST00000306042 CAMK2N1Q7Z7J9 78 aa5.23□□□□□ -1.57
PTPRE-202ENST00000306042 KRTAP1-4P0C5Y4 121 aa5.23□□□□□ -1.57
PTPRE-202ENST00000306042 UQCR11O14957 56 aa5.22□□□□□ -1.57
PTPRE-202ENST00000306042 PLAC4Q8WY50 150 aa5.22□□□□□ -1.57
PTPRE-202ENST00000306042 H7BZZ5 65 aa5.21□□□□□ -1.58
PTPRE-202ENST00000306042 Q75L30 129 aa5.2□□□□□ -1.58
PTPRE-202ENST00000306042 RPL37P61927 97 aaKnown RBP5.19□□□□□ -1.58
PTPRE-202ENST00000306042 NOTCH2NLQ7Z3S9 236 aa5.19□□□□□ -1.58
PTPRE-202ENST00000306042 A0A0D9SG42 100 aa5.18□□□□□ -1.58
PTPRE-202ENST00000306042 SPINT4Q6UDR6 99 aa5.18□□□□□ -1.58
PTPRE-202ENST00000306042 RPS28P62857 69 aaKnown RBP5.16□□□□□ -1.58
PTPRE-202ENST00000306042 TRRAPQ9Y4A5 3859 aa5.16□□□□□ -1.58
PTPRE-202ENST00000306042 R4GN34 69 aa5.14□□□□□ -1.59
PTPRE-202ENST00000306042 TPRXLQ17RH7 258 aa5.14□□□□□ -1.59
PTPRE-202ENST00000306042 MIR22HGQ0VDD5 57 aa5.13□□□□□ -1.59
PTPRE-202ENST00000306042 SRRM2Q9UQ35 2752 aaKnown RBP5.11□□□□□ -1.59
PTPRE-202ENST00000306042 H1FX-AS1Q4G0G2 97 aa5.1□□□□□ -1.59
PTPRE-202ENST00000306042 A0A1B0GU33 70 aa5.09□□□□□ -1.59
PTPRE-202ENST00000306042 LCA10Q71F78 164 aa5.08□□□□□ -1.6
PTPRE-202ENST00000306042 XP32Q5T750 250 aa5.08□□□□□ -1.6
PTPRE-202ENST00000306042 KRTAP10-8P60410 259 aa5.07□□□□□ -1.6
PTPRE-202ENST00000306042 C20orf166-AS1Q96NR2 134 aa5.07□□□□□ -1.6
PTPRE-202ENST00000306042 A8MUU9 505 aa5.06□□□□□ -1.6
PTPRE-202ENST00000306042 CRIPTQ9P021 101 aa5.06□□□□□ -1.6
PTPRE-202ENST00000306042 CUBNO60494 3623 aa5.06□□□□□ -1.6
PTPRE-202ENST00000306042 DMAC1Q96GE9 116 aa5.04□□□□□ -1.6
PTPRE-202ENST00000306042 COL7A1Q02388 2944 aa5.03□□□□□ -1.6
PTPRE-202ENST00000306042 M0QZ58 72 aa5.03□□□□□ -1.6
PTPRE-202ENST00000306042 ADM2Q7Z4H4 148 aa5□□□□□ -1.61
PTPRE-202ENST00000306042 KRTAP13-3Q3SY46 172 aa4.99□□□□□ -1.61
PTPRE-202ENST00000306042 CDC42SE1Q9NRR8 79 aa4.98□□□□□ -1.61
PTPRE-202ENST00000306042 ZNF469Q96JG9 3925 aaPredicted RBP4.98□□□□□ -1.61
PTPRE-202ENST00000306042 AKAP9Q99996 3911 aa4.97□□□□□ -1.61
PTPRE-202ENST00000306042 MEGF8Q7Z7M0 2845 aa4.96□□□□□ -1.61
PTPRE-202ENST00000306042 H3BS24 57 aa4.96□□□□□ -1.62
PTPRE-202ENST00000306042 VPS13CQ709C8 3753 aa4.95□□□□□ -1.62
PTPRE-202ENST00000306042 LINC01558Q9Y6Z2 57 aa4.93□□□□□ -1.62
PTPRE-202ENST00000306042 Q1T7F1 81 aa4.91□□□□□ -1.62
PTPRE-202ENST00000306042 CYSTM1Q9H1C7 97 aa4.9□□□□□ -1.63
PTPRE-202ENST00000306042 PRO2289Q9P1D8 64 aa4.88□□□□□ -1.63
PTPRE-202ENST00000306042 HUWE1Q7Z6Z7 4374 aaKnown RBP4.86□□□□□ -1.63
PTPRE-202ENST00000306042 KTN1-AS1Q86SY8 53 aa4.85□□□□□ -1.63
PTPRE-202ENST00000306042 DNHD1Q96M86 4753 aa4.84□□□□□ -1.63
PTPRE-202ENST00000306042 KRTAP16-1A8MUX0 517 aa4.84□□□□□ -1.63
PTPRE-202ENST00000306042 KRTAP10-10P60014 251 aa4.83□□□□□ -1.64
PTPRE-202ENST00000306042 KRTAP4-5Q9BYR2 181 aa4.83□□□□□ -1.64
PTPRE-202ENST00000306042 A0A0A0MQY5 61 aa4.81□□□□□ -1.64
PTPRE-202ENST00000306042 SPATA8Q6RVD6 105 aa4.81□□□□□ -1.64
PTPRE-202ENST00000306042 MT1HL1P0DM35 61 aa4.8□□□□□ -1.64
PTPRE-202ENST00000306042 DNAH9Q9NYC9 4486 aa4.75□□□□□ -1.65
PTPRE-202ENST00000306042 Q5VV11 94 aa4.75□□□□□ -1.65
PTPRE-202ENST00000306042 ALMS1Q8TCU4 4167 aa4.73□□□□□ -1.65
PTPRE-202ENST00000306042 KRTAP10-4P60372 401 aaPredicted RBP4.73□□□□□ -1.65
PTPRE-202ENST00000306042 LUZP6Q538Z0 58 aa4.71□□□□□ -1.66
PTPRE-202ENST00000306042 ROMO1P60602 79 aa4.66□□□□□ -1.66
PTPRE-202ENST00000306042 A8MU10 97 aa4.65□□□□□ -1.67
PTPRE-202ENST00000306042 TNP1P09430 55 aa4.64□□□□□ -1.67
PTPRE-202ENST00000306042 DNAH5Q8TE73 4624 aa4.56□□□□□ -1.68
PTPRE-202ENST00000306042 ANK2Q01484 3957 aa4.56□□□□□ -1.68
PTPRE-202ENST00000306042 PLECQ15149 4684 aaKnown RBP4.55□□□□□ -1.68
PTPRE-202ENST00000306042 PRAC1Q96KF2 57 aa4.55□□□□□ -1.68
PTPRE-202ENST00000306042 PRKDCP78527 4128 aaKnown RBP4.54□□□□□ -1.68
PTPRE-202ENST00000306042 P0C880 135 aa4.53□□□□□ -1.68
PTPRE-202ENST00000306042 DNAH11Q96DT5 4516 aa4.51□□□□□ -1.69
PTPRE-202ENST00000306042 DNAH1Q9P2D7 4330 aa4.48□□□□□ -1.69
PTPRE-202ENST00000306042 CSMD3Q7Z407 3707 aa4.48□□□□□ -1.69
PTPRE-202ENST00000306042 STARD9Q9P2P6 4700 aa4.47□□□□□ -1.69
PTPRE-202ENST00000306042 VPS13DQ5THJ4 4388 aa4.46□□□□□ -1.7
PTPRE-202ENST00000306042 A6NN06 94 aa4.44□□□□□ -1.7
PTPRE-202ENST00000306042 PP632Q6XCG6 107 aa4.44□□□□□ -1.7
PTPRE-202ENST00000306042 KRTAP3-1Q9BYR8 98 aa4.42□□□□□ -1.7
PTPRE-202ENST00000306042 DYNC1H1Q14204 4646 aaKnown RBP4.42□□□□□ -1.7
PTPRE-202ENST00000306042 H0YAA0 97 aa4.41□□□□□ -1.7
PTPRE-202ENST00000306042 DNAH10Q8IVF4 4471 aa4.41□□□□□ -1.7
PTPRE-202ENST00000306042 LRP1BQ9NZR2 4599 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms