RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 A8MWP4 228 aa13.16□□□□□ -0.3
TPM4-201ENST00000300933 LIMD2Q9BT23 127 aa13.16□□□□□ -0.3
TPM4-201ENST00000300933 PKD1P98161 4303 aa13.15□□□□□ -0.3
TPM4-201ENST00000300933 H3BPC8 53 aa13.13□□□□□ -0.31
TPM4-201ENST00000300933 LINC00472Q9H8W2 130 aa13.13□□□□□ -0.31
TPM4-201ENST00000300933 LRP1BQ9NZR2 4599 aa13.13□□□□□ -0.31
TPM4-201ENST00000300933 PCOTHQ58A44 107 aa13.11□□□□□ -0.31
TPM4-201ENST00000300933 COA5Q86WW8 74 aa13.11□□□□□ -0.31
TPM4-201ENST00000300933 LINC00483Q53H64 154 aa13.1□□□□□ -0.31
TPM4-201ENST00000300933 KRTAP10-1P60331 282 aa13.1□□□□□ -0.31
TPM4-201ENST00000300933 IGLV7-43P04211 117 aa13.09□□□□□ -0.31
TPM4-201ENST00000300933 A6NED7 52 aa13.08□□□□□ -0.32
TPM4-201ENST00000300933 LCA10Q71F78 164 aa13.06□□□□□ -0.32
TPM4-201ENST00000300933 ZNF706Q9Y5V0 76 aaPredicted RBP13.06□□□□□ -0.32
TPM4-201ENST00000300933 MMP24-AS1A0A0U1RRL7 71 aa13.05□□□□□ -0.32
TPM4-201ENST00000300933 PKHD1P08F94 4074 aa13.04□□□□□ -0.32
TPM4-201ENST00000300933 IGLV7-46A0A075B6I9 117 aa13.01□□□□□ -0.33
TPM4-201ENST00000300933 KRTAP21-3Q3LHN1 58 aa13.01□□□□□ -0.33
TPM4-201ENST00000300933 SPAG11AQ6PDA7 123 aa13□□□□□ -0.33
TPM4-201ENST00000300933 Q96NJ1 140 aa13□□□□□ -0.33
TPM4-201ENST00000300933 Q75L30 129 aa12.99□□□□□ -0.33
TPM4-201ENST00000300933 VPS13BQ7Z7G8 4022 aa12.98□□□□□ -0.33
TPM4-201ENST00000300933 CD164Q04900 197 aa12.98□□□□□ -0.33
TPM4-201ENST00000300933 SACSQ9NZJ4 4579 aa12.97□□□□□ -0.33
TPM4-201ENST00000300933 LOC101927531A0A1B0GV80 90 aa12.95□□□□□ -0.34
TPM4-201ENST00000300933 KTN1-AS1Q86SY8 53 aa12.95□□□□□ -0.34
TPM4-201ENST00000300933 NDUFS5O43920 106 aa12.94□□□□□ -0.34
TPM4-201ENST00000300933 ATP11AUNQ6ZP68 121 aa12.93□□□□□ -0.34
TPM4-201ENST00000300933 SPINK6Q6UWN8 80 aa12.92□□□□□ -0.34
TPM4-201ENST00000300933 Q6ZSA8 131 aa12.91□□□□□ -0.34
TPM4-201ENST00000300933 IGHV6-1A0A0B4J1U7 121 aa12.89□□□□□ -0.35
TPM4-201ENST00000300933 A0A087X002 238 aa12.89□□□□□ -0.35
TPM4-201ENST00000300933 NOTCH2NLQ7Z3S9 236 aa12.86□□□□□ -0.35
TPM4-201ENST00000300933 CDC42SE1Q9NRR8 79 aa12.85□□□□□ -0.35
TPM4-201ENST00000300933 RBM12B-AS1Q9P1G2 102 aa12.85□□□□□ -0.35
TPM4-201ENST00000300933 C8orf17Q9NRJ1 99 aa12.85□□□□□ -0.35
TPM4-201ENST00000300933 A6NN06 94 aa12.84□□□□□ -0.35
TPM4-201ENST00000300933 TP53AIP1Q9HCN2 124 aa12.84□□□□□ -0.35
TPM4-201ENST00000300933 LINC01558Q9Y6Z2 57 aa12.82□□□□□ -0.36
TPM4-201ENST00000300933 HRES1P13985 223 aa12.81□□□□□ -0.36
TPM4-201ENST00000300933 SPINK7P58062 85 aa12.81□□□□□ -0.36
TPM4-201ENST00000300933 KRTAP13-2Q52LG2 175 aa12.8□□□□□ -0.36
TPM4-201ENST00000300933 ASB16-AS1Q495Z4 193 aa12.79□□□□□ -0.36
TPM4-201ENST00000300933 CDK2AP2O75956 126 aa12.78□□□□□ -0.36
TPM4-201ENST00000300933 A0A1B0GVX0 72 aa12.77□□□□□ -0.37
TPM4-201ENST00000300933 KMT2CQ8NEZ4 4911 aaKnown RBP12.73□□□□□ -0.37
TPM4-201ENST00000300933 SMR3BP02814 79 aaPredicted RBP12.73□□□□□ -0.37
TPM4-201ENST00000300933 DYNC1H1Q14204 4646 aaKnown RBP12.72□□□□□ -0.37
TPM4-201ENST00000300933 SSBP3-AS1Q7Z2R9 100 aa12.71□□□□□ -0.37
TPM4-201ENST00000300933 MRPL34Q9BQ48 92 aaKnown RBP12.71□□□□□ -0.38
TPM4-201ENST00000300933 PRR26Q8N8Z3 221 aa12.7□□□□□ -0.38
TPM4-201ENST00000300933 KRTAP1-4P0C5Y4 121 aa12.69□□□□□ -0.38
TPM4-201ENST00000300933 FAT1Q14517 4588 aa12.68□□□□□ -0.38
TPM4-201ENST00000300933 C7orf65Q6ZTY9 151 aa12.65□□□□□ -0.38
TPM4-201ENST00000300933 PLA2G1BP04054 148 aaKnown RBP12.65□□□□□ -0.38
TPM4-201ENST00000300933 Q5W150 140 aa12.61□□□□□ -0.39
TPM4-201ENST00000300933 RYR2Q92736 4967 aa12.6□□□□□ -0.39
TPM4-201ENST00000300933 TYMSOSQ8TAI1 123 aa12.54□□□□□ -0.4
TPM4-201ENST00000300933 APOBP04114 4563 aaKnown RBP12.52□□□□□ -0.41
TPM4-201ENST00000300933 RETNLBQ9BQ08 111 aa12.52□□□□□ -0.41
TPM4-201ENST00000300933 A0A1B0GVY2 172 aa12.5□□□□□ -0.41
TPM4-201ENST00000300933 LINC00313P59037 77 aa12.47□□□□□ -0.41
TPM4-201ENST00000300933 PRAC1Q96KF2 57 aa12.47□□□□□ -0.41
TPM4-201ENST00000300933 ACYP2P14621 99 aa12.46□□□□□ -0.41
TPM4-201ENST00000300933 C4orf48Q5BLP8 95 aa12.46□□□□□ -0.41
TPM4-201ENST00000300933 KRTAP13-3Q3SY46 172 aa12.45□□□□□ -0.42
TPM4-201ENST00000300933 ADM2Q7Z4H4 148 aa12.41□□□□□ -0.42
TPM4-201ENST00000300933 C8orf87E5RJ46 101 aa12.36□□□□□ -0.43
TPM4-201ENST00000300933 A0A1B0GU69 56 aa12.35□□□□□ -0.43
TPM4-201ENST00000300933 LINC00304Q8N9R0 145 aa12.33□□□□□ -0.44
TPM4-201ENST00000300933 DMAC1Q96GE9 116 aa12.33□□□□□ -0.44
TPM4-201ENST00000300933 RYR3Q15413 4870 aa12.33□□□□□ -0.44
TPM4-201ENST00000300933 SPINK1P00995 79 aa12.32□□□□□ -0.44
TPM4-201ENST00000300933 KRTAP10-4P60372 401 aaPredicted RBP12.32□□□□□ -0.44
TPM4-201ENST00000300933 KRTAP16-1A8MUX0 517 aa12.29□□□□□ -0.44
TPM4-201ENST00000300933 LRP1Q07954 4544 aaKnown RBP12.23□□□□□ -0.45
TPM4-201ENST00000300933 FAM229AH3BQW9 127 aa12.2□□□□□ -0.46
TPM4-201ENST00000300933 SPATA8Q6RVD6 105 aa12.2□□□□□ -0.46
TPM4-201ENST00000300933 MIR22HGQ0VDD5 57 aa12.19□□□□□ -0.46
TPM4-201ENST00000300933 PKHD1L1Q86WI1 4243 aa12.18□□□□□ -0.46
TPM4-201ENST00000300933 IGKV2-30P06310 120 aa12.17□□□□□ -0.46
TPM4-201ENST00000300933 C9orf92A6NGG3 77 aa12.16□□□□□ -0.46
TPM4-201ENST00000300933 FLG2Q5D862 2391 aaPredicted RBP12.16□□□□□ -0.46
TPM4-201ENST00000300933 UQCR11O14957 56 aa12.15□□□□□ -0.46
TPM4-201ENST00000300933 IGKV2D-30A0A075B6S6 120 aa12.14□□□□□ -0.47
TPM4-201ENST00000300933 HSPG2P98160 4391 aa12.13□□□□□ -0.47
TPM4-201ENST00000300933 LINC01554Q52M75 96 aa12.1□□□□□ -0.47
TPM4-201ENST00000300933 DMBT1Q9UGM3 2413 aaPredicted RBP12.07□□□□□ -0.48
TPM4-201ENST00000300933 KIAA1109Q2LD37 5005 aa12.04□□□□□ -0.48
TPM4-201ENST00000300933 RPS29P62273 56 aaKnown RBP12.03□□□□□ -0.48
TPM4-201ENST00000300933 KRTAP17-1Q9BYP8 105 aa12.03□□□□□ -0.48
TPM4-201ENST00000300933 Q5VSD8 79 aa12□□□□□ -0.49
TPM4-201ENST00000300933 CSAG1Q6PB30 78 aa11.99□□□□□ -0.49
TPM4-201ENST00000300933 Q8N1X5 172 aa11.99□□□□□ -0.49
TPM4-201ENST00000300933 RYR1P21817 5038 aa11.98□□□□□ -0.49
TPM4-201ENST00000300933 TNXBP22105 4242 aa11.97□□□□□ -0.49
TPM4-201ENST00000300933 MYCBP2O75592 4640 aa11.96□□□□□ -0.49
TPM4-201ENST00000300933 EPPK1P58107 5090 aaKnown RBP11.92□□□□□ -0.5
TPM4-201ENST00000300933 FAT3Q8TDW7 4589 aa11.87□□□□□ -0.51
TPM4-201ENST00000300933 KRTAP10-8P60410 259 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms