RNA–Protein interactions for RNA: ENST00000298454.3

VSTM4-201, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VSTM4, Length 2,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-201ENST00000298454 A0A0U1RQV1 116 aa13.08□□□□□ -0.32
VSTM4-201ENST00000298454 H7BZZ5 65 aa13.07□□□□□ -0.32
VSTM4-201ENST00000298454 C4orf48Q5BLP8 95 aa13.07□□□□□ -0.32
VSTM4-201ENST00000298454 C1orf195Q5TG92 126 aa13.07□□□□□ -0.32
VSTM4-201ENST00000298454 TMEM258P61165 79 aa13.04□□□□□ -0.32
VSTM4-201ENST00000298454 LIMD2Q9BT23 127 aa13.04□□□□□ -0.32
VSTM4-201ENST00000298454 C5orf47Q569G3 176 aa13.03□□□□□ -0.32
VSTM4-201ENST00000298454 SPINK1P00995 79 aa13.01□□□□□ -0.33
VSTM4-201ENST00000298454 HSPG2P98160 4391 aa13□□□□□ -0.33
VSTM4-201ENST00000298454 LINC00304Q8N9R0 145 aa12.99□□□□□ -0.33
VSTM4-201ENST00000298454 FAM229AH3BQW9 127 aa12.97□□□□□ -0.33
VSTM4-201ENST00000298454 MRPL34Q9BQ48 92 aaKnown RBP12.97□□□□□ -0.33
VSTM4-201ENST00000298454 NDUFC1O43677 76 aa12.96□□□□□ -0.33
VSTM4-201ENST00000298454 ZCCHC13Q8WW36 166 aaKnown RBP12.94□□□□□ -0.34
VSTM4-201ENST00000298454 NDUFS5O43920 106 aa12.93□□□□□ -0.34
VSTM4-201ENST00000298454 MP68P56378 58 aa12.93□□□□□ -0.34
VSTM4-201ENST00000298454 H0Y9P7 68 aa12.92□□□□□ -0.34
VSTM4-201ENST00000298454 PKHD1L1Q86WI1 4243 aa12.92□□□□□ -0.34
VSTM4-201ENST00000298454 Q5VSD8 79 aa12.91□□□□□ -0.34
VSTM4-201ENST00000298454 SPAG11AQ6PDA7 123 aa12.91□□□□□ -0.34
VSTM4-201ENST00000298454 RYR1P21817 5038 aa12.91□□□□□ -0.34
VSTM4-201ENST00000298454 C8orf87E5RJ46 101 aa12.9□□□□□ -0.34
VSTM4-201ENST00000298454 FAM236DA0A1B0GTK5 79 aa12.89□□□□□ -0.35
VSTM4-201ENST00000298454 FAM236CP0DP71 79 aa12.89□□□□□ -0.35
VSTM4-201ENST00000298454 LINC00208Q96KT6 92 aa12.89□□□□□ -0.35
VSTM4-201ENST00000298454 TP53AIP1Q9HCN2 124 aa12.89□□□□□ -0.35
VSTM4-201ENST00000298454 LINC00313P59037 77 aa12.88□□□□□ -0.35
VSTM4-201ENST00000298454 RPS29P62273 56 aaKnown RBP12.88□□□□□ -0.35
VSTM4-201ENST00000298454 TRAV22A0A0B4J277 110 aa12.87□□□□□ -0.35
VSTM4-201ENST00000298454 KRTAP17-1Q9BYP8 105 aa12.84□□□□□ -0.35
VSTM4-201ENST00000298454 EPPK1P58107 5090 aaKnown RBP12.81□□□□□ -0.36
VSTM4-201ENST00000298454 H3BPC8 53 aa12.8□□□□□ -0.36
VSTM4-201ENST00000298454 KIAA1109Q2LD37 5005 aa12.8□□□□□ -0.36
VSTM4-201ENST00000298454 C1orf64Q8NEQ6 169 aa12.8□□□□□ -0.36
VSTM4-201ENST00000298454 LRP1Q07954 4544 aaKnown RBP12.77□□□□□ -0.37
VSTM4-201ENST00000298454 KRTAP16-1A8MUX0 517 aa12.76□□□□□ -0.37
VSTM4-201ENST00000298454 Q5W150 140 aa12.73□□□□□ -0.37
VSTM4-201ENST00000298454 Q8N9P0 234 aaPredicted RBP12.73□□□□□ -0.37
VSTM4-201ENST00000298454 RPS28P62857 69 aaKnown RBP12.71□□□□□ -0.37
VSTM4-201ENST00000298454 ATP5EP56381 51 aaPredicted RBP12.71□□□□□ -0.37
VSTM4-201ENST00000298454 OXTP01178 125 aa12.7□□□□□ -0.38
VSTM4-201ENST00000298454 TNXBP22105 4242 aa12.7□□□□□ -0.38
VSTM4-201ENST00000298454 Q8N1X5 172 aa12.69□□□□□ -0.38
VSTM4-201ENST00000298454 KRTAP10-8P60410 259 aa12.68□□□□□ -0.38
VSTM4-201ENST00000298454 KRTAP13-3Q3SY46 172 aa12.68□□□□□ -0.38
VSTM4-201ENST00000298454 RETNLBQ9BQ08 111 aa12.67□□□□□ -0.38
VSTM4-201ENST00000298454 SERP1Q9Y6X1 66 aa12.64□□□□□ -0.39
VSTM4-201ENST00000298454 PRR4Q16378 134 aa12.64□□□□□ -0.39
VSTM4-201ENST00000298454 FAT3Q8TDW7 4589 aa12.62□□□□□ -0.39
VSTM4-201ENST00000298454 PCOTHQ58A44 107 aa12.62□□□□□ -0.39
VSTM4-201ENST00000298454 FLG2Q5D862 2391 aaPredicted RBP12.59□□□□□ -0.39
VSTM4-201ENST00000298454 LOC101927531A0A1B0GV80 90 aa12.56□□□□□ -0.4
VSTM4-201ENST00000298454 C9orf92A6NGG3 77 aa12.56□□□□□ -0.4
VSTM4-201ENST00000298454 SPANXA2-OT1Q8N9U9 137 aa12.54□□□□□ -0.4
VSTM4-201ENST00000298454 CYP4F30PQ9H0H9 118 aa12.53□□□□□ -0.4
VSTM4-201ENST00000298454 MYCBP2O75592 4640 aa12.52□□□□□ -0.41
VSTM4-201ENST00000298454 IGLV7-46A0A075B6I9 117 aa12.47□□□□□ -0.41
VSTM4-201ENST00000298454 MT1HL1P0DM35 61 aa12.46□□□□□ -0.41
VSTM4-201ENST00000298454 IGKV2-30P06310 120 aa12.43□□□□□ -0.42
VSTM4-201ENST00000298454 C20orf166-AS1Q96NR2 134 aa12.4□□□□□ -0.42
VSTM4-201ENST00000298454 KRTAP4-5Q9BYR2 181 aa12.4□□□□□ -0.42
VSTM4-201ENST00000298454 A8MUU9 505 aa12.39□□□□□ -0.43
VSTM4-201ENST00000298454 DMBT1Q9UGM3 2413 aaPredicted RBP12.38□□□□□ -0.43
VSTM4-201ENST00000298454 IGKV2D-30A0A075B6S6 120 aa12.36□□□□□ -0.43
VSTM4-201ENST00000298454 SMIM26A0A096LP01 95 aa12.35□□□□□ -0.43
VSTM4-201ENST00000298454 HRES1P13985 223 aa12.33□□□□□ -0.44
VSTM4-201ENST00000298454 FP248Q71RG6 208 aaPredicted RBP12.33□□□□□ -0.44
VSTM4-201ENST00000298454 COA5Q86WW8 74 aa12.25□□□□□ -0.45
VSTM4-201ENST00000298454 Q75L30 129 aa12.23□□□□□ -0.45
VSTM4-201ENST00000298454 C7orf65Q6ZTY9 151 aa12.22□□□□□ -0.45
VSTM4-201ENST00000298454 MPLKIPQ8TAP9 179 aa12.2□□□□□ -0.46
VSTM4-201ENST00000298454 C4orf26Q17RF5 130 aa12.2□□□□□ -0.46
VSTM4-201ENST00000298454 DMAC1Q96GE9 116 aa12.16□□□□□ -0.46
VSTM4-201ENST00000298454 ABCA13Q86UQ4 5058 aa12.15□□□□□ -0.46
VSTM4-201ENST00000298454 XP32Q5T750 250 aa12.13□□□□□ -0.47
VSTM4-201ENST00000298454 BIRC6Q9NR09 4857 aa12.12□□□□□ -0.47
VSTM4-201ENST00000298454 ACYP2P14621 99 aa12.11□□□□□ -0.47
VSTM4-201ENST00000298454 RPL37P61927 97 aaKnown RBP12.08□□□□□ -0.48
VSTM4-201ENST00000298454 SPINK7P58062 85 aa12.08□□□□□ -0.48
VSTM4-201ENST00000298454 HERC2O95714 4834 aa12.06□□□□□ -0.48
VSTM4-201ENST00000298454 ATP11AUNQ6ZP68 121 aa12.06□□□□□ -0.48
VSTM4-201ENST00000298454 Q1T7F1 81 aa12.05□□□□□ -0.48
VSTM4-201ENST00000298454 CHKB-CPT1BH3BT56 60 aa11.95□□□□□ -0.5
VSTM4-201ENST00000298454 TPRXLQ17RH7 258 aa11.95□□□□□ -0.5
VSTM4-201ENST00000298454 J3QL48 77 aa11.94□□□□□ -0.5
VSTM4-201ENST00000298454 V9GYY9 64 aa11.92□□□□□ -0.5
VSTM4-201ENST00000298454 PSPHP1O15172 72 aa11.92□□□□□ -0.5
VSTM4-201ENST00000298454 LPAP08519 4548 aa11.9□□□□□ -0.5
VSTM4-201ENST00000298454 A8MUN3 132 aa11.88□□□□□ -0.51
VSTM4-201ENST00000298454 KRTAP3-1Q9BYR8 98 aa11.88□□□□□ -0.51
VSTM4-201ENST00000298454 LRP2P98164 4655 aa11.86□□□□□ -0.51
VSTM4-201ENST00000298454 PRR15LQ9BU68 103 aa11.81□□□□□ -0.52
VSTM4-201ENST00000298454 LINC01558Q9Y6Z2 57 aa11.81□□□□□ -0.52
VSTM4-201ENST00000298454 COX6B2Q6YFQ2 88 aa11.78□□□□□ -0.52
VSTM4-201ENST00000298454 Q5VV11 94 aa11.77□□□□□ -0.53
VSTM4-201ENST00000298454 PCLOQ9Y6V0 5065 aa11.63□□□□□ -0.55
VSTM4-201ENST00000298454 BRK1Q8WUW1 75 aa11.62□□□□□ -0.55
VSTM4-201ENST00000298454 PRO0628Q9UI54 55 aa11.57□□□□□ -0.56
VSTM4-201ENST00000298454 A0A1B0GU69 56 aa11.57□□□□□ -0.56
VSTM4-201ENST00000298454 SPTSSBQ8NFR3 76 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms