RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 FAT1Q14517 4588 aa10.02□□□□□ -0.8
CPSF4-201ENST00000292476 ABCA13Q86UQ4 5058 aa10.01□□□□□ -0.81
CPSF4-201ENST00000292476 HRCT1Q6UXD1 115 aa10□□□□□ -0.81
CPSF4-201ENST00000292476 CYP4F30PQ9H0H9 118 aa10□□□□□ -0.81
CPSF4-201ENST00000292476 PCLOQ9Y6V0 5065 aa10□□□□□ -0.81
CPSF4-201ENST00000292476 IGLV9-49A0A0B4J1Y8 123 aa9.99□□□□□ -0.81
CPSF4-201ENST00000292476 Q5VSD8 79 aa9.99□□□□□ -0.81
CPSF4-201ENST00000292476 SPINK6Q6UWN8 80 aa9.98□□□□□ -0.81
CPSF4-201ENST00000292476 TRAV22A0A0B4J277 110 aa9.97□□□□□ -0.81
CPSF4-201ENST00000292476 MMP24-AS1A0A0U1RRL7 71 aa9.97□□□□□ -0.81
CPSF4-201ENST00000292476 hDV103S1A0JD37 113 aa9.97□□□□□ -0.81
CPSF4-201ENST00000292476 FAM229BQ4G0N7 80 aa9.97□□□□□ -0.81
CPSF4-201ENST00000292476 Q96NJ1 140 aa9.97□□□□□ -0.81
CPSF4-201ENST00000292476 MOBPQ13875 183 aa9.96□□□□□ -0.82
CPSF4-201ENST00000292476 H0Y9P7 68 aa9.95□□□□□ -0.82
CPSF4-201ENST00000292476 FAM229AH3BQW9 127 aa9.95□□□□□ -0.82
CPSF4-201ENST00000292476 ASB16-AS1Q495Z4 193 aa9.95□□□□□ -0.82
CPSF4-201ENST00000292476 SSBP3-AS1Q7Z2R9 100 aa9.94□□□□□ -0.82
CPSF4-201ENST00000292476 SPANXA2-OT1Q8N9U9 137 aa9.93□□□□□ -0.82
CPSF4-201ENST00000292476 LINC00208Q96KT6 92 aa9.92□□□□□ -0.82
CPSF4-201ENST00000292476 TP53AIP1Q9HCN2 124 aa9.92□□□□□ -0.82
CPSF4-201ENST00000292476 ANAPC11Q9NYG5 84 aa9.92□□□□□ -0.82
CPSF4-201ENST00000292476 SRRM2Q9UQ35 2752 aaKnown RBP9.9□□□□□ -0.82
CPSF4-201ENST00000292476 C1orf64Q8NEQ6 169 aa9.9□□□□□ -0.83
CPSF4-201ENST00000292476 VPS13BQ7Z7G8 4022 aa9.89□□□□□ -0.83
CPSF4-201ENST00000292476 PLA2G1BP04054 148 aaKnown RBP9.89□□□□□ -0.83
CPSF4-201ENST00000292476 CD164Q04900 197 aa9.87□□□□□ -0.83
CPSF4-201ENST00000292476 C8orf17Q9NRJ1 99 aa9.87□□□□□ -0.83
CPSF4-201ENST00000292476 A0A1B0GVX0 72 aa9.87□□□□□ -0.83
CPSF4-201ENST00000292476 KRTAP1-4P0C5Y4 121 aa9.84□□□□□ -0.83
CPSF4-201ENST00000292476 Q1T7F1 81 aa9.82□□□□□ -0.84
CPSF4-201ENST00000292476 A0A087X002 238 aa9.81□□□□□ -0.84
CPSF4-201ENST00000292476 KRTAP10-4P60372 401 aaPredicted RBP9.81□□□□□ -0.84
CPSF4-201ENST00000292476 FLG2Q5D862 2391 aaPredicted RBP9.8□□□□□ -0.84
CPSF4-201ENST00000292476 MPLKIPQ8TAP9 179 aa9.8□□□□□ -0.84
CPSF4-201ENST00000292476 KRTAP13-2Q52LG2 175 aa9.79□□□□□ -0.84
CPSF4-201ENST00000292476 PRO0628Q9UI54 55 aa9.79□□□□□ -0.84
CPSF4-201ENST00000292476 TYMSOSQ8TAI1 123 aa9.77□□□□□ -0.84
CPSF4-201ENST00000292476 MRPL34Q9BQ48 92 aaKnown RBP9.77□□□□□ -0.84
CPSF4-201ENST00000292476 IGHV6-1A0A0B4J1U7 121 aa9.77□□□□□ -0.85
CPSF4-201ENST00000292476 V9GYY9 64 aa9.76□□□□□ -0.85
CPSF4-201ENST00000292476 PRR4Q16378 134 aa9.75□□□□□ -0.85
CPSF4-201ENST00000292476 C4orf48Q5BLP8 95 aa9.75□□□□□ -0.85
CPSF4-201ENST00000292476 MYCBP2O75592 4640 aa9.75□□□□□ -0.85
CPSF4-201ENST00000292476 IGLV7-46A0A075B6I9 117 aa9.74□□□□□ -0.85
CPSF4-201ENST00000292476 LIMD2Q9BT23 127 aa9.71□□□□□ -0.85
CPSF4-201ENST00000292476 SPAG11AQ6PDA7 123 aa9.71□□□□□ -0.86
CPSF4-201ENST00000292476 C8orf87E5RJ46 101 aa9.7□□□□□ -0.86
CPSF4-201ENST00000292476 SPINK1P00995 79 aa9.7□□□□□ -0.86
CPSF4-201ENST00000292476 C1orf195Q5TG92 126 aa9.69□□□□□ -0.86
CPSF4-201ENST00000292476 NDUFS5O43920 106 aa9.68□□□□□ -0.86
CPSF4-201ENST00000292476 PRR26Q8N8Z3 221 aa9.68□□□□□ -0.86
CPSF4-201ENST00000292476 PKHD1L1Q86WI1 4243 aa9.68□□□□□ -0.86
CPSF4-201ENST00000292476 RPS29P62273 56 aaKnown RBP9.66□□□□□ -0.86
CPSF4-201ENST00000292476 LINC00304Q8N9R0 145 aa9.65□□□□□ -0.86
CPSF4-201ENST00000292476 LRP1Q07954 4544 aaKnown RBP9.64□□□□□ -0.87
CPSF4-201ENST00000292476 LOC101927531A0A1B0GV80 90 aa9.64□□□□□ -0.87
CPSF4-201ENST00000292476 NOTCH2NLQ7Z3S9 236 aa9.64□□□□□ -0.87
CPSF4-201ENST00000292476 BRK1Q8WUW1 75 aa9.62□□□□□ -0.87
CPSF4-201ENST00000292476 DMBT1Q9UGM3 2413 aaPredicted RBP9.62□□□□□ -0.87
CPSF4-201ENST00000292476 J3QL48 77 aa9.61□□□□□ -0.87
CPSF4-201ENST00000292476 FAT3Q8TDW7 4589 aa9.61□□□□□ -0.87
CPSF4-201ENST00000292476 PCOTHQ58A44 107 aa9.61□□□□□ -0.87
CPSF4-201ENST00000292476 COA5Q86WW8 74 aa9.61□□□□□ -0.87
CPSF4-201ENST00000292476 KRTAP13-3Q3SY46 172 aa9.6□□□□□ -0.87
CPSF4-201ENST00000292476 Q8N9P0 234 aaPredicted RBP9.58□□□□□ -0.88
CPSF4-201ENST00000292476 HERC1Q15751 4861 aa9.56□□□□□ -0.88
CPSF4-201ENST00000292476 PSPHP1O15172 72 aa9.53□□□□□ -0.88
CPSF4-201ENST00000292476 LINC00313P59037 77 aa9.53□□□□□ -0.88
CPSF4-201ENST00000292476 A8MUN3 132 aa9.51□□□□□ -0.89
CPSF4-201ENST00000292476 Q5W150 140 aa9.51□□□□□ -0.89
CPSF4-201ENST00000292476 Q5VV11 94 aa9.5□□□□□ -0.89
CPSF4-201ENST00000292476 KRTAP10-8P60410 259 aa9.49□□□□□ -0.89
CPSF4-201ENST00000292476 MT1HL1P0DM35 61 aa9.47□□□□□ -0.89
CPSF4-201ENST00000292476 HRES1P13985 223 aa9.45□□□□□ -0.9
CPSF4-201ENST00000292476 Q75L30 129 aa9.45□□□□□ -0.9
CPSF4-201ENST00000292476 LINC01558Q9Y6Z2 57 aa9.44□□□□□ -0.9
CPSF4-201ENST00000292476 PRR15LQ9BU68 103 aa9.43□□□□□ -0.9
CPSF4-201ENST00000292476 KRTAP16-1A8MUX0 517 aa9.42□□□□□ -0.9
CPSF4-201ENST00000292476 TNXBP22105 4242 aa9.41□□□□□ -0.9
CPSF4-201ENST00000292476 ACYP2P14621 99 aa9.39□□□□□ -0.91
CPSF4-201ENST00000292476 IGKV2-30P06310 120 aa9.39□□□□□ -0.91
CPSF4-201ENST00000292476 CHKB-CPT1BH3BT56 60 aa9.38□□□□□ -0.91
CPSF4-201ENST00000292476 DMAC1Q96GE9 116 aa9.38□□□□□ -0.91
CPSF4-201ENST00000292476 A6NED7 52 aa9.26□□□□□ -0.93
CPSF4-201ENST00000292476 RETNLBQ9BQ08 111 aa9.25□□□□□ -0.93
CPSF4-201ENST00000292476 HMCN2Q8NDA2 5059 aa9.25□□□□□ -0.93
CPSF4-201ENST00000292476 CDC42SE1Q9NRR8 79 aa9.24□□□□□ -0.93
CPSF4-201ENST00000292476 ATP11AUNQ6ZP68 121 aa9.21□□□□□ -0.93
CPSF4-201ENST00000292476 LCA10Q71F78 164 aa9.2□□□□□ -0.94
CPSF4-201ENST00000292476 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
CPSF4-201ENST00000292476 A8MU10 97 aa9.16□□□□□ -0.94
CPSF4-201ENST00000292476 C9orf92A6NGG3 77 aa9.15□□□□□ -0.94
CPSF4-201ENST00000292476 C7orf65Q6ZTY9 151 aa9.15□□□□□ -0.94
CPSF4-201ENST00000292476 PMAIP1Q13794 54 aa9.13□□□□□ -0.95
CPSF4-201ENST00000292476 C20orf166-AS1Q96NR2 134 aa9.13□□□□□ -0.95
CPSF4-201ENST00000292476 A8MUU9 505 aa9.11□□□□□ -0.95
CPSF4-201ENST00000292476 SPINK7P58062 85 aa9.11□□□□□ -0.95
CPSF4-201ENST00000292476 A0A1B0GU69 56 aa9.07□□□□□ -0.96
CPSF4-201ENST00000292476 SPTSSBQ8NFR3 76 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms