RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 H3BPC8 53 aa10.8□□□□□ -0.68
SHKBP1-201ENST00000291842 CYP4F30PQ9H0H9 118 aa10.8□□□□□ -0.68
SHKBP1-201ENST00000291842 LINC00336Q6ZUF6 198 aa10.79□□□□□ -0.68
SHKBP1-201ENST00000291842 PKD1P98161 4303 aa10.78□□□□□ -0.68
SHKBP1-201ENST00000291842 LRP1BQ9NZR2 4599 aa10.77□□□□□ -0.69
SHKBP1-201ENST00000291842 V9GYY9 64 aa10.76□□□□□ -0.69
SHKBP1-201ENST00000291842 MRPL34Q9BQ48 92 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-201ENST00000291842 PCOTHQ58A44 107 aa10.74□□□□□ -0.69
SHKBP1-201ENST00000291842 TP53AIP1Q9HCN2 124 aa10.74□□□□□ -0.69
SHKBP1-201ENST00000291842 FAT2Q9NYQ8 4349 aa10.73□□□□□ -0.69
SHKBP1-201ENST00000291842 Q6ZSA8 131 aa10.73□□□□□ -0.69
SHKBP1-201ENST00000291842 SSBP3-AS1Q7Z2R9 100 aa10.71□□□□□ -0.69
SHKBP1-201ENST00000291842 SPANXA2-OT1Q8N9U9 137 aa10.7□□□□□ -0.7
SHKBP1-201ENST00000291842 KRTAP13-2Q52LG2 175 aa10.69□□□□□ -0.7
SHKBP1-201ENST00000291842 CD164Q04900 197 aa10.67□□□□□ -0.7
SHKBP1-201ENST00000291842 BRK1Q8WUW1 75 aa10.62□□□□□ -0.71
SHKBP1-201ENST00000291842 C1orf195Q5TG92 126 aa10.62□□□□□ -0.71
SHKBP1-201ENST00000291842 VPS13BQ7Z7G8 4022 aa10.62□□□□□ -0.71
SHKBP1-201ENST00000291842 IGLV7-46A0A075B6I9 117 aa10.61□□□□□ -0.71
SHKBP1-201ENST00000291842 Q1T7F1 81 aa10.61□□□□□ -0.71
SHKBP1-201ENST00000291842 Q5W150 140 aa10.61□□□□□ -0.71
SHKBP1-201ENST00000291842 PSPHP1O15172 72 aa10.6□□□□□ -0.71
SHKBP1-201ENST00000291842 KRTAP1-4P0C5Y4 121 aa10.59□□□□□ -0.71
SHKBP1-201ENST00000291842 PKHD1P08F94 4074 aa10.56□□□□□ -0.72
SHKBP1-201ENST00000291842 COA5Q86WW8 74 aa10.55□□□□□ -0.72
SHKBP1-201ENST00000291842 LINC00313P59037 77 aa10.54□□□□□ -0.72
SHKBP1-201ENST00000291842 RETNLBQ9BQ08 111 aa10.53□□□□□ -0.72
SHKBP1-201ENST00000291842 PLA2G1BP04054 148 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-201ENST00000291842 C8orf87E5RJ46 101 aa10.52□□□□□ -0.73
SHKBP1-201ENST00000291842 Q8N9P0 234 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-201ENST00000291842 KRTAP13-3Q3SY46 172 aa10.51□□□□□ -0.73
SHKBP1-201ENST00000291842 A8MUN3 132 aa10.5□□□□□ -0.73
SHKBP1-201ENST00000291842 KRTAP21-3Q3LHN1 58 aa10.49□□□□□ -0.73
SHKBP1-201ENST00000291842 LOC101927531A0A1B0GV80 90 aa10.47□□□□□ -0.73
SHKBP1-201ENST00000291842 SACSQ9NZJ4 4579 aa10.47□□□□□ -0.73
SHKBP1-201ENST00000291842 TYMSOSQ8TAI1 123 aa10.46□□□□□ -0.74
SHKBP1-201ENST00000291842 SMR3BP02814 79 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-201ENST00000291842 HRES1P13985 223 aa10.43□□□□□ -0.74
SHKBP1-201ENST00000291842 C4orf48Q5BLP8 95 aa10.43□□□□□ -0.74
SHKBP1-201ENST00000291842 LIMD2Q9BT23 127 aa10.43□□□□□ -0.74
SHKBP1-201ENST00000291842 Q5VV11 94 aa10.4□□□□□ -0.74
SHKBP1-201ENST00000291842 KRTAP16-1A8MUX0 517 aa10.39□□□□□ -0.75
SHKBP1-201ENST00000291842 PRR26Q8N8Z3 221 aa10.39□□□□□ -0.75
SHKBP1-201ENST00000291842 PRR15LQ9BU68 103 aa10.39□□□□□ -0.75
SHKBP1-201ENST00000291842 FAM229AH3BQW9 127 aa10.37□□□□□ -0.75
SHKBP1-201ENST00000291842 SPAG11AQ6PDA7 123 aa10.37□□□□□ -0.75
SHKBP1-201ENST00000291842 DYNC1H1Q14204 4646 aaKnown RBP10.35□□□□□ -0.75
SHKBP1-201ENST00000291842 SPINK1P00995 79 aa10.34□□□□□ -0.75
SHKBP1-201ENST00000291842 CHKB-CPT1BH3BT56 60 aa10.32□□□□□ -0.76
SHKBP1-201ENST00000291842 A8MU10 97 aa10.3□□□□□ -0.76
SHKBP1-201ENST00000291842 PMAIP1Q13794 54 aa10.3□□□□□ -0.76
SHKBP1-201ENST00000291842 IGKV2-30P06310 120 aa10.3□□□□□ -0.76
SHKBP1-201ENST00000291842 LINC00304Q8N9R0 145 aa10.29□□□□□ -0.76
SHKBP1-201ENST00000291842 FAT1Q14517 4588 aa10.29□□□□□ -0.76
SHKBP1-201ENST00000291842 IGKV2D-30A0A075B6S6 120 aa10.26□□□□□ -0.77
SHKBP1-201ENST00000291842 A0A1B0GVY2 172 aa10.26□□□□□ -0.77
SHKBP1-201ENST00000291842 ACYP2P14621 99 aa10.25□□□□□ -0.77
SHKBP1-201ENST00000291842 LINC01558Q9Y6Z2 57 aa10.23□□□□□ -0.77
SHKBP1-201ENST00000291842 DMAC1Q96GE9 116 aa10.22□□□□□ -0.77
SHKBP1-201ENST00000291842 Q75L30 129 aa10.21□□□□□ -0.77
SHKBP1-201ENST00000291842 APOBP04114 4563 aaKnown RBP10.21□□□□□ -0.78
SHKBP1-201ENST00000291842 A6NED7 52 aa10.18□□□□□ -0.78
SHKBP1-201ENST00000291842 KRTAP10-4P60372 401 aaPredicted RBP10.18□□□□□ -0.78
SHKBP1-201ENST00000291842 KMT2CQ8NEZ4 4911 aaKnown RBP10.15□□□□□ -0.78
SHKBP1-201ENST00000291842 C9orf92A6NGG3 77 aa10.14□□□□□ -0.79
SHKBP1-201ENST00000291842 RPS29P62273 56 aaKnown RBP10.14□□□□□ -0.79
SHKBP1-201ENST00000291842 RYR2Q92736 4967 aa10.13□□□□□ -0.79
SHKBP1-201ENST00000291842 LCA10Q71F78 164 aa10.13□□□□□ -0.79
SHKBP1-201ENST00000291842 SPINK7P58062 85 aa10.09□□□□□ -0.79
SHKBP1-201ENST00000291842 C7orf65Q6ZTY9 151 aa10.08□□□□□ -0.8
SHKBP1-201ENST00000291842 SPTSSBQ8NFR3 76 aa10.06□□□□□ -0.8
SHKBP1-201ENST00000291842 PKHD1L1Q86WI1 4243 aa10.04□□□□□ -0.8
SHKBP1-201ENST00000291842 Q8N1X5 172 aa10.02□□□□□ -0.8
SHKBP1-201ENST00000291842 CDC42SE1Q9NRR8 79 aa10□□□□□ -0.81
SHKBP1-201ENST00000291842 C20orf166-AS1Q96NR2 134 aa9.95□□□□□ -0.82
SHKBP1-201ENST00000291842 A0A1B0GU69 56 aa9.95□□□□□ -0.82
SHKBP1-201ENST00000291842 A8MUU9 505 aa9.95□□□□□ -0.82
SHKBP1-201ENST00000291842 LRP1Q07954 4544 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-201ENST00000291842 RBM12B-AS1Q9P1G2 102 aa9.93□□□□□ -0.82
SHKBP1-201ENST00000291842 FLG2Q5D862 2391 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-201ENST00000291842 ATP11AUNQ6ZP68 121 aa9.93□□□□□ -0.82
SHKBP1-201ENST00000291842 KTN1-AS1Q86SY8 53 aa9.85□□□□□ -0.83
SHKBP1-201ENST00000291842 Q5VSD8 79 aa9.84□□□□□ -0.83
SHKBP1-201ENST00000291842 HSPG2P98160 4391 aa9.82□□□□□ -0.84
SHKBP1-201ENST00000291842 RYR3Q15413 4870 aa9.82□□□□□ -0.84
SHKBP1-201ENST00000291842 TNXBP22105 4242 aa9.8□□□□□ -0.84
SHKBP1-201ENST00000291842 A6NN06 94 aa9.79□□□□□ -0.84
SHKBP1-201ENST00000291842 KRTAP3-1Q9BYR8 98 aa9.79□□□□□ -0.84
SHKBP1-201ENST00000291842 FAT3Q8TDW7 4589 aa9.79□□□□□ -0.84
SHKBP1-201ENST00000291842 KRTAP10-8P60410 259 aa9.78□□□□□ -0.84
SHKBP1-201ENST00000291842 DMBT1Q9UGM3 2413 aaPredicted RBP9.76□□□□□ -0.85
SHKBP1-201ENST00000291842 KRTAP17-1Q9BYP8 105 aa9.76□□□□□ -0.85
SHKBP1-201ENST00000291842 H3BS24 57 aa9.74□□□□□ -0.85
SHKBP1-201ENST00000291842 UQCR11O14957 56 aa9.72□□□□□ -0.85
SHKBP1-201ENST00000291842 MIR22HGQ0VDD5 57 aa9.7□□□□□ -0.86
SHKBP1-201ENST00000291842 SPATA8Q6RVD6 105 aa9.7□□□□□ -0.86
SHKBP1-201ENST00000291842 RYR1P21817 5038 aa9.67□□□□□ -0.86
SHKBP1-201ENST00000291842 MYCBP2O75592 4640 aa9.65□□□□□ -0.86
SHKBP1-201ENST00000291842 KIAA1109Q2LD37 5005 aa9.63□□□□□ -0.87
SHKBP1-201ENST00000291842 COX6B2Q6YFQ2 88 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms