RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 S4R3F8 94 aa6.56□□□□□ -1.36
PKNOX1-201ENST00000291547 M0R2T5 61 aa6.56□□□□□ -1.36
PKNOX1-201ENST00000291547 SPRR1AP35321 89 aa6.56□□□□□ -1.36
PKNOX1-201ENST00000291547 R4GN34 69 aa6.55□□□□□ -1.36
PKNOX1-201ENST00000291547 FBN2P35556 2912 aa6.55□□□□□ -1.36
PKNOX1-201ENST00000291547 TENM4Q6N022 2769 aa6.54□□□□□ -1.36
PKNOX1-201ENST00000291547 RPL37P61927 97 aaKnown RBP6.54□□□□□ -1.36
PKNOX1-201ENST00000291547 ROMO1P60602 79 aa6.53□□□□□ -1.36
PKNOX1-201ENST00000291547 SMG1Q96Q15 3661 aaKnown RBP6.51□□□□□ -1.37
PKNOX1-201ENST00000291547 A8MU10 97 aa6.5□□□□□ -1.37
PKNOX1-201ENST00000291547 SPRR1BP22528 89 aa6.5□□□□□ -1.37
PKNOX1-201ENST00000291547 SPATA8Q6RVD6 105 aa6.49□□□□□ -1.37
PKNOX1-201ENST00000291547 PLAC8Q9NZF1 115 aa6.48□□□□□ -1.37
PKNOX1-201ENST00000291547 KRTAP29-1A8MX34 341 aaPredicted RBP6.46□□□□□ -1.38
PKNOX1-201ENST00000291547 PDZD2O15018 2839 aa6.45□□□□□ -1.38
PKNOX1-201ENST00000291547 H1FX-AS1Q4G0G2 97 aa6.44□□□□□ -1.38
PKNOX1-201ENST00000291547 KRTAP26-1Q6PEX3 210 aa6.42□□□□□ -1.38
PKNOX1-201ENST00000291547 Q6ZR54 194 aa6.42□□□□□ -1.38
PKNOX1-201ENST00000291547 M0QZ58 72 aa6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 NBEAL2Q6ZNJ1 2754 aa6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 KRTAP16-1A8MUX0 517 aa6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 ASH1LQ9NR48 2969 aaKnown RBP6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 NF1P21359 2839 aa6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 MXRA5Q9NR99 2828 aa6.41□□□□□ -1.38
PKNOX1-201ENST00000291547 NIPBLQ6KC79 2804 aaeCLIP6.38□□□□□ -1.39
PKNOX1-201ENST00000291547 KRTAP25-1Q3LHN0 102 aa6.37□□□□□ -1.39
PKNOX1-201ENST00000291547 ADM2Q7Z4H4 148 aa6.36□□□□□ -1.39
PKNOX1-201ENST00000291547 KRTAP21-3Q3LHN1 58 aa6.34□□□□□ -1.39
PKNOX1-201ENST00000291547 SEC61BP60468 96 aaKnown RBP6.34□□□□□ -1.4
PKNOX1-201ENST00000291547 CSMD1Q96PZ7 3565 aa6.33□□□□□ -1.4
PKNOX1-201ENST00000291547 KRTAP1-5Q9BYS1 174 aa6.32□□□□□ -1.4
PKNOX1-201ENST00000291547 OTOGQ6ZRI0 2925 aa6.31□□□□□ -1.4
PKNOX1-201ENST00000291547 VPS13CQ709C8 3753 aa6.3□□□□□ -1.4
PKNOX1-201ENST00000291547 NBPF19A0A087WUL8 3843 aa6.3□□□□□ -1.4
PKNOX1-201ENST00000291547 SVEP1Q4LDE5 3571 aa6.29□□□□□ -1.4
PKNOX1-201ENST00000291547 PANO1I0J062 215 aa6.27□□□□□ -1.41
PKNOX1-201ENST00000291547 ZFHX3Q15911 3703 aa6.27□□□□□ -1.41
PKNOX1-201ENST00000291547 PLAC4Q8WY50 150 aa6.27□□□□□ -1.41
PKNOX1-201ENST00000291547 KRTAP4-16G5E9R7 235 aaPredicted RBP6.26□□□□□ -1.41
PKNOX1-201ENST00000291547 NDUFAF8A1L188 74 aa6.24□□□□□ -1.41
PKNOX1-201ENST00000291547 KRTAP10-1P60331 282 aa6.23□□□□□ -1.41
PKNOX1-201ENST00000291547 NOTCH2NLQ7Z3S9 236 aa6.23□□□□□ -1.41
PKNOX1-201ENST00000291547 CUBNO60494 3623 aa6.21□□□□□ -1.41
PKNOX1-201ENST00000291547 CELSR1Q9NYQ6 3014 aa6.21□□□□□ -1.41
PKNOX1-201ENST00000291547 Q5VSD8 79 aa6.21□□□□□ -1.42
PKNOX1-201ENST00000291547 KRTAP10-2P60368 255 aa6.19□□□□□ -1.42
PKNOX1-201ENST00000291547 C20orf166-AS1Q96NR2 134 aa6.18□□□□□ -1.42
PKNOX1-201ENST00000291547 CSMD2Q7Z408 3487 aa6.17□□□□□ -1.42
PKNOX1-201ENST00000291547 ANK3Q12955 4377 aaKnown RBP6.16□□□□□ -1.42
PKNOX1-201ENST00000291547 TENM1Q9UKZ4 2725 aa6.15□□□□□ -1.42
PKNOX1-201ENST00000291547 A8MUU9 505 aa6.1□□□□□ -1.43
PKNOX1-201ENST00000291547 KRTAP11-1Q8IUC1 163 aa6.05□□□□□ -1.44
PKNOX1-201ENST00000291547 Q6ZRN7 208 aaPredicted RBP6.04□□□□□ -1.44
PKNOX1-201ENST00000291547 FBN1P35555 2871 aaKnown RBP6.03□□□□□ -1.44
PKNOX1-201ENST00000291547 VWFP04275 2813 aa6.03□□□□□ -1.44
PKNOX1-201ENST00000291547 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
PKNOX1-201ENST00000291547 TENM3Q9P273 2699 aa5.99□□□□□ -1.45
PKNOX1-201ENST00000291547 TNP1P09430 55 aa5.98□□□□□ -1.45
PKNOX1-201ENST00000291547 RPS29P62273 56 aaKnown RBP5.98□□□□□ -1.45
PKNOX1-201ENST00000291547 ZNF469Q96JG9 3925 aaPredicted RBP5.98□□□□□ -1.45
PKNOX1-201ENST00000291547 KRTAP7-1Q8IUC3 87 aa5.97□□□□□ -1.45
PKNOX1-201ENST00000291547 KRTAP13-2Q52LG2 175 aa5.94□□□□□ -1.46
PKNOX1-201ENST00000291547 AKAP9Q99996 3911 aa5.92□□□□□ -1.46
PKNOX1-201ENST00000291547 KRTAP13-1Q8IUC0 172 aa5.9□□□□□ -1.47
PKNOX1-201ENST00000291547 TRRAPQ9Y4A5 3859 aa5.87□□□□□ -1.47
PKNOX1-201ENST00000291547 PKD1L1Q8TDX9 2849 aa5.83□□□□□ -1.48
PKNOX1-201ENST00000291547 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
PKNOX1-201ENST00000291547 H0YAA0 97 aa5.81□□□□□ -1.48
PKNOX1-201ENST00000291547 P0C880 135 aa5.79□□□□□ -1.48
PKNOX1-201ENST00000291547 TENM2Q9NT68 2774 aa5.77□□□□□ -1.49
PKNOX1-201ENST00000291547 KRTAP10-8P60410 259 aa5.74□□□□□ -1.49
PKNOX1-201ENST00000291547 KRTAP13-3Q3SY46 172 aa5.72□□□□□ -1.49
PKNOX1-201ENST00000291547 TGP01266 2768 aa5.69□□□□□ -1.5
PKNOX1-201ENST00000291547 FBN3Q75N90 2809 aa5.64□□□□□ -1.51
PKNOX1-201ENST00000291547 HUWE1Q7Z6Z7 4374 aaKnown RBP5.62□□□□□ -1.51
PKNOX1-201ENST00000291547 A0A1B0GVY2 172 aa5.62□□□□□ -1.51
PKNOX1-201ENST00000291547 XP32Q5T750 250 aa5.61□□□□□ -1.51
PKNOX1-201ENST00000291547 KRTAP1-4P0C5Y4 121 aa5.58□□□□□ -1.52
PKNOX1-201ENST00000291547 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
PKNOX1-201ENST00000291547 MEGF8Q7Z7M0 2845 aa5.52□□□□□ -1.53
PKNOX1-201ENST00000291547 DNAH9Q9NYC9 4486 aa5.51□□□□□ -1.53
PKNOX1-201ENST00000291547 TPRXLQ17RH7 258 aa5.49□□□□□ -1.53
PKNOX1-201ENST00000291547 KRTAP10-10P60014 251 aa5.49□□□□□ -1.53
PKNOX1-201ENST00000291547 ANK2Q01484 3957 aa5.46□□□□□ -1.54
PKNOX1-201ENST00000291547 PRO2289Q9P1D8 64 aa5.45□□□□□ -1.54
PKNOX1-201ENST00000291547 CSMD3Q7Z407 3707 aa5.38□□□□□ -1.55
PKNOX1-201ENST00000291547 CMYA5Q8N3K9 4069 aa5.37□□□□□ -1.55
PKNOX1-201ENST00000291547 KRTAP12-2P59991 146 aa5.36□□□□□ -1.55
PKNOX1-201ENST00000291547 DNHD1Q96M86 4753 aa5.36□□□□□ -1.55
PKNOX1-201ENST00000291547 ALMS1Q8TCU4 4167 aa5.35□□□□□ -1.55
PKNOX1-201ENST00000291547 COL7A1Q02388 2944 aa5.35□□□□□ -1.55
PKNOX1-201ENST00000291547 PLECQ15149 4684 aaKnown RBP5.32□□□□□ -1.56
PKNOX1-201ENST00000291547 DNAH3Q8TD57 4116 aa5.3□□□□□ -1.56
PKNOX1-201ENST00000291547 KRTAP13-4Q3LI77 160 aa5.29□□□□□ -1.56
PKNOX1-201ENST00000291547 PRKDCP78527 4128 aaKnown RBP5.27□□□□□ -1.57
PKNOX1-201ENST00000291547 KRTAP12-1P59990 96 aa5.26□□□□□ -1.57
PKNOX1-201ENST00000291547 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
PKNOX1-201ENST00000291547 STARD9Q9P2P6 4700 aa5.24□□□□□ -1.57
PKNOX1-201ENST00000291547 SRRM2Q9UQ35 2752 aaKnown RBP5.22□□□□□ -1.57
PKNOX1-201ENST00000291547 DNAH1Q9P2D7 4330 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms