RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 C20orf197Q8N268 126 aa8.1□□□□□ -1.11
SS18-201ENST00000269137 PRR15Q8IV56 129 aa8.09□□□□□ -1.11
SS18-201ENST00000269137 FLG2Q5D862 2391 aaPredicted RBP8.09□□□□□ -1.11
SS18-201ENST00000269137 KRTAP10-8P60410 259 aa8.08□□□□□ -1.12
SS18-201ENST00000269137 BIRC6Q9NR09 4857 aa8.08□□□□□ -1.12
SS18-201ENST00000269137 NDUFB1O75438 58 aa8.08□□□□□ -1.12
SS18-201ENST00000269137 TMEM258P61165 79 aa8.08□□□□□ -1.12
SS18-201ENST00000269137 C1orf195Q5TG92 126 aa8.07□□□□□ -1.12
SS18-201ENST00000269137 KLKP1Q107X0 134 aa8.05□□□□□ -1.12
SS18-201ENST00000269137 OCR1Q9BZK8 76 aa8.05□□□□□ -1.12
SS18-201ENST00000269137 A0A1B0GVX0 72 aa8.03□□□□□ -1.12
SS18-201ENST00000269137 HCG22E2RYF7 251 aa8.03□□□□□ -1.12
SS18-201ENST00000269137 MYCBP2O75592 4640 aa8.02□□□□□ -1.13
SS18-201ENST00000269137 SNURFQ9Y675 71 aa8□□□□□ -1.13
SS18-201ENST00000269137 H7BZZ5 65 aa7.99□□□□□ -1.13
SS18-201ENST00000269137 IGHV6-1A0A0B4J1U7 121 aa7.99□□□□□ -1.13
SS18-201ENST00000269137 KRTAP29-1A8MX34 341 aaPredicted RBP7.99□□□□□ -1.13
SS18-201ENST00000269137 KRTAP4-5Q9BYR2 181 aa7.99□□□□□ -1.13
SS18-201ENST00000269137 HERC2O95714 4834 aa7.98□□□□□ -1.13
SS18-201ENST00000269137 MMP24-AS1A0A0U1RRL7 71 aa7.98□□□□□ -1.13
SS18-201ENST00000269137 TMEM254Q8TBM7 123 aa7.98□□□□□ -1.13
SS18-201ENST00000269137 C8orf17Q9NRJ1 99 aa7.98□□□□□ -1.13
SS18-201ENST00000269137 DMBT1Q9UGM3 2413 aaPredicted RBP7.97□□□□□ -1.13
SS18-201ENST00000269137 OXTP01178 125 aa7.96□□□□□ -1.13
SS18-201ENST00000269137 MT1HL1P0DM35 61 aa7.96□□□□□ -1.13
SS18-201ENST00000269137 RPS28P62857 69 aaKnown RBP7.96□□□□□ -1.13
SS18-201ENST00000269137 CASC2Q6XLA1 102 aa7.96□□□□□ -1.13
SS18-201ENST00000269137 NDUFC1O43677 76 aa7.96□□□□□ -1.14
SS18-201ENST00000269137 WFDC13Q8IUB5 93 aa7.96□□□□□ -1.14
SS18-201ENST00000269137 A0A0U1RQV1 116 aa7.94□□□□□ -1.14
SS18-201ENST00000269137 hDV103S1A0JD37 113 aa7.94□□□□□ -1.14
SS18-201ENST00000269137 C8orf87E5RJ46 101 aa7.94□□□□□ -1.14
SS18-201ENST00000269137 NOTCH2NLQ7Z3S9 236 aa7.94□□□□□ -1.14
SS18-201ENST00000269137 FAM236DA0A1B0GTK5 79 aa7.93□□□□□ -1.14
SS18-201ENST00000269137 FAM236CP0DP71 79 aa7.93□□□□□ -1.14
SS18-201ENST00000269137 LINC00313P59037 77 aa7.9□□□□□ -1.14
SS18-201ENST00000269137 ABCA13Q86UQ4 5058 aa7.9□□□□□ -1.15
SS18-201ENST00000269137 MRPL34Q9BQ48 92 aaKnown RBP7.88□□□□□ -1.15
SS18-201ENST00000269137 C5orf47Q569G3 176 aa7.87□□□□□ -1.15
SS18-201ENST00000269137 ATP5EP56381 51 aaPredicted RBP7.85□□□□□ -1.15
SS18-201ENST00000269137 RETNLBQ9BQ08 111 aa7.85□□□□□ -1.15
SS18-201ENST00000269137 ZCCHC13Q8WW36 166 aaKnown RBP7.84□□□□□ -1.15
SS18-201ENST00000269137 KRTAP16-1A8MUX0 517 aa7.83□□□□□ -1.16
SS18-201ENST00000269137 SERP1Q9Y6X1 66 aa7.83□□□□□ -1.16
SS18-201ENST00000269137 FP248Q71RG6 208 aaPredicted RBP7.82□□□□□ -1.16
SS18-201ENST00000269137 TP53AIP1Q9HCN2 124 aa7.82□□□□□ -1.16
SS18-201ENST00000269137 Q8N9P0 234 aaPredicted RBP7.81□□□□□ -1.16
SS18-201ENST00000269137 NDUFS5O43920 106 aa7.79□□□□□ -1.16
SS18-201ENST00000269137 MP68P56378 58 aa7.78□□□□□ -1.16
SS18-201ENST00000269137 H0Y9P7 68 aa7.75□□□□□ -1.17
SS18-201ENST00000269137 H3BPC8 53 aa7.75□□□□□ -1.17
SS18-201ENST00000269137 IGLV7-46A0A075B6I9 117 aa7.73□□□□□ -1.17
SS18-201ENST00000269137 C9orf92A6NGG3 77 aa7.73□□□□□ -1.17
SS18-201ENST00000269137 LINC00208Q96KT6 92 aa7.73□□□□□ -1.17
SS18-201ENST00000269137 TRAV22A0A0B4J277 110 aa7.73□□□□□ -1.17
SS18-201ENST00000269137 J3QL48 77 aa7.73□□□□□ -1.17
SS18-201ENST00000269137 LCE2DQ5TA82 110 aaPredicted RBP7.73□□□□□ -1.17
SS18-201ENST00000269137 C20orf166-AS1Q96NR2 134 aa7.71□□□□□ -1.18
SS18-201ENST00000269137 A8MUU9 505 aa7.7□□□□□ -1.18
SS18-201ENST00000269137 KRTAP13-3Q3SY46 172 aa7.7□□□□□ -1.18
SS18-201ENST00000269137 Q5W150 140 aa7.69□□□□□ -1.18
SS18-201ENST00000269137 SMIM26A0A096LP01 95 aa7.67□□□□□ -1.18
SS18-201ENST00000269137 PRR4Q16378 134 aa7.67□□□□□ -1.18
SS18-201ENST00000269137 C1orf64Q8NEQ6 169 aa7.67□□□□□ -1.18
SS18-201ENST00000269137 CYP4F30PQ9H0H9 118 aa7.66□□□□□ -1.18
SS18-201ENST00000269137 Q75L30 129 aa7.64□□□□□ -1.19
SS18-201ENST00000269137 PCLOQ9Y6V0 5065 aa7.62□□□□□ -1.19
SS18-201ENST00000269137 TPRXLQ17RH7 258 aa7.62□□□□□ -1.19
SS18-201ENST00000269137 SPANXA2-OT1Q8N9U9 137 aa7.62□□□□□ -1.19
SS18-201ENST00000269137 C4orf26Q17RF5 130 aa7.61□□□□□ -1.19
SS18-201ENST00000269137 LOC101927531A0A1B0GV80 90 aa7.6□□□□□ -1.19
SS18-201ENST00000269137 XP32Q5T750 250 aa7.59□□□□□ -1.19
SS18-201ENST00000269137 RPL37P61927 97 aaKnown RBP7.56□□□□□ -1.2
SS18-201ENST00000269137 IGKV2-30P06310 120 aa7.55□□□□□ -1.2
SS18-201ENST00000269137 PCOTHQ58A44 107 aa7.52□□□□□ -1.2
SS18-201ENST00000269137 ATP11AUNQ6ZP68 121 aa7.52□□□□□ -1.21
SS18-201ENST00000269137 IGKV2D-30A0A075B6S6 120 aa7.5□□□□□ -1.21
SS18-201ENST00000269137 LPAP08519 4548 aa7.49□□□□□ -1.21
SS18-201ENST00000269137 MPLKIPQ8TAP9 179 aa7.49□□□□□ -1.21
SS18-201ENST00000269137 LRP2P98164 4655 aa7.49□□□□□ -1.21
SS18-201ENST00000269137 C7orf65Q6ZTY9 151 aa7.48□□□□□ -1.21
SS18-201ENST00000269137 HERC1Q15751 4861 aa7.47□□□□□ -1.21
SS18-201ENST00000269137 SVIPQ8NHG7 77 aa7.47□□□□□ -1.21
SS18-201ENST00000269137 Q1T7F1 81 aa7.45□□□□□ -1.22
SS18-201ENST00000269137 SPINK7P58062 85 aa7.43□□□□□ -1.22
SS18-201ENST00000269137 HRES1P13985 223 aa7.42□□□□□ -1.22
SS18-201ENST00000269137 COA5Q86WW8 74 aa7.42□□□□□ -1.22
SS18-201ENST00000269137 HMCN2Q8NDA2 5059 aa7.39□□□□□ -1.23
SS18-201ENST00000269137 V9GYY9 64 aa7.38□□□□□ -1.23
SS18-201ENST00000269137 SEC61BP60468 96 aaKnown RBP7.35□□□□□ -1.23
SS18-201ENST00000269137 MUC17Q685J3 4493 aa7.32□□□□□ -1.24
SS18-201ENST00000269137 DMAC1Q96GE9 116 aa7.31□□□□□ -1.24
SS18-201ENST00000269137 PSPHP1O15172 72 aa7.3□□□□□ -1.24
SS18-201ENST00000269137 ACYP2P14621 99 aa7.29□□□□□ -1.24
SS18-201ENST00000269137 A8MUN3 132 aa7.27□□□□□ -1.25
SS18-201ENST00000269137 KRTAP3-3Q9BYR6 98 aa7.26□□□□□ -1.25
SS18-201ENST00000269137 KRTAP3-2Q9BYR7 98 aa7.26□□□□□ -1.25
SS18-201ENST00000269137 PRO0628Q9UI54 55 aa7.26□□□□□ -1.25
SS18-201ENST00000269137 BRK1Q8WUW1 75 aa7.25□□□□□ -1.25
SS18-201ENST00000269137 Q5VV11 94 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 766.3 ms