RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IGHV6-1A0A0B4J1U7 121 aa6.07□□□□□ -1.44
LIG3-201ENST00000262327 LY6G6CO95867 125 aa6.07□□□□□ -1.44
LIG3-201ENST00000262327 VPS13DQ5THJ4 4388 aa6.07□□□□□ -1.44
LIG3-201ENST00000262327 KRTAP13-1Q8IUC0 172 aa6.07□□□□□ -1.44
LIG3-201ENST00000262327 Q96NJ1 140 aa6.06□□□□□ -1.44
LIG3-201ENST00000262327 SPANXA2-OT1Q8N9U9 137 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 LINC01554Q52M75 96 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 HECTD4Q9Y4D8 3996 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 DNAH8Q96JB1 4490 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 A0A087X002 238 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 NOTCH2NLQ7Z3S9 236 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 ADM2Q7Z4H4 148 aa6.05□□□□□ -1.44
LIG3-201ENST00000262327 SPINK7P58062 85 aa6.04□□□□□ -1.44
LIG3-201ENST00000262327 C1orf134Q5TEV5 83 aa6.04□□□□□ -1.44
LIG3-201ENST00000262327 COA5Q86WW8 74 aa6.04□□□□□ -1.44
LIG3-201ENST00000262327 SPINK6Q6UWN8 80 aa6.03□□□□□ -1.44
LIG3-201ENST00000262327 SPACA4Q8TDM5 124 aa6.03□□□□□ -1.44
LIG3-201ENST00000262327 PSORS1C2Q9UIG4 136 aa6.03□□□□□ -1.44
LIG3-201ENST00000262327 SPAG11AQ6PDA7 123 aa6.02□□□□□ -1.45
LIG3-201ENST00000262327 C8orf17Q9NRJ1 99 aa6.02□□□□□ -1.45
LIG3-201ENST00000262327 A0A087WTM6 91 aa6.02□□□□□ -1.45
LIG3-201ENST00000262327 DNAH2Q9P225 4427 aa6.01□□□□□ -1.45
LIG3-201ENST00000262327 H3BPC8 53 aa6□□□□□ -1.45
LIG3-201ENST00000262327 DNAH17Q9UFH2 4485 aa6□□□□□ -1.45
LIG3-201ENST00000262327 ALMS1Q8TCU4 4167 aa6□□□□□ -1.45
LIG3-201ENST00000262327 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
LIG3-201ENST00000262327 RTL8CO15255 209 aa5.99□□□□□ -1.45
LIG3-201ENST00000262327 CDK2AP2O75956 126 aa5.99□□□□□ -1.45
LIG3-201ENST00000262327 DNAH6Q9C0G6 4158 aa5.98□□□□□ -1.45
LIG3-201ENST00000262327 A0A1B0GVX0 72 aa5.97□□□□□ -1.45
LIG3-201ENST00000262327 PLAC8Q9NZF1 115 aa5.97□□□□□ -1.45
LIG3-201ENST00000262327 IGLV7-46A0A075B6I9 117 aa5.97□□□□□ -1.45
LIG3-201ENST00000262327 IGLV5-52A0A0A0MRZ9 124 aa5.96□□□□□ -1.45
LIG3-201ENST00000262327 CIRBP-AS1Q8TBR5 109 aa5.96□□□□□ -1.46
LIG3-201ENST00000262327 LINC00483Q53H64 154 aa5.95□□□□□ -1.46
LIG3-201ENST00000262327 MRPL34Q9BQ48 92 aaKnown RBP5.95□□□□□ -1.46
LIG3-201ENST00000262327 ASB16-AS1Q495Z4 193 aa5.94□□□□□ -1.46
LIG3-201ENST00000262327 RETNLBQ9BQ08 111 aa5.94□□□□□ -1.46
LIG3-201ENST00000262327 ZNF861PO60384 105 aa5.94□□□□□ -1.46
LIG3-201ENST00000262327 PLA2G1BP04054 148 aaKnown RBP5.93□□□□□ -1.46
LIG3-201ENST00000262327 TP53AIP1Q9HCN2 124 aa5.93□□□□□ -1.46
LIG3-201ENST00000262327 Q5W150 140 aa5.93□□□□□ -1.46
LIG3-201ENST00000262327 ZNF706Q9Y5V0 76 aaPredicted RBP5.92□□□□□ -1.46
LIG3-201ENST00000262327 HRES1P13985 223 aa5.91□□□□□ -1.46
LIG3-201ENST00000262327 DNAH11Q96DT5 4516 aa5.89□□□□□ -1.47
LIG3-201ENST00000262327 IGLV7-43P04211 117 aa5.87□□□□□ -1.47
LIG3-201ENST00000262327 KRTAP10-2P60368 255 aa5.85□□□□□ -1.47
LIG3-201ENST00000262327 DNAH5Q8TE73 4624 aa5.84□□□□□ -1.47
LIG3-201ENST00000262327 CSAG1Q6PB30 78 aa5.83□□□□□ -1.48
LIG3-201ENST00000262327 LRP1BQ9NZR2 4599 aa5.82□□□□□ -1.48
LIG3-201ENST00000262327 SACSQ9NZJ4 4579 aa5.8□□□□□ -1.48
LIG3-201ENST00000262327 KRTAP13-3Q3SY46 172 aa5.8□□□□□ -1.48
LIG3-201ENST00000262327 Q6ZSA8 131 aa5.8□□□□□ -1.48
LIG3-201ENST00000262327 HYDINQ4G0P3 5121 aa5.79□□□□□ -1.48
LIG3-201ENST00000262327 KRTAP10-1P60331 282 aa5.79□□□□□ -1.48
LIG3-201ENST00000262327 A0A1B0GVY2 172 aa5.78□□□□□ -1.48
LIG3-201ENST00000262327 KRTAP13-2Q52LG2 175 aa5.78□□□□□ -1.48
LIG3-201ENST00000262327 FAT2Q9NYQ8 4349 aa5.76□□□□□ -1.49
LIG3-201ENST00000262327 SSBP3-AS1Q7Z2R9 100 aa5.75□□□□□ -1.49
LIG3-201ENST00000262327 VPS13BQ7Z7G8 4022 aa5.74□□□□□ -1.49
LIG3-201ENST00000262327 ACYP2P14621 99 aa5.74□□□□□ -1.49
LIG3-201ENST00000262327 IGKV2D-30A0A075B6S6 120 aa5.74□□□□□ -1.49
LIG3-201ENST00000262327 IGKV2-30P06310 120 aa5.74□□□□□ -1.49
LIG3-201ENST00000262327 SPATA8Q6RVD6 105 aa5.72□□□□□ -1.49
LIG3-201ENST00000262327 RYR2Q92736 4967 aa5.72□□□□□ -1.49
LIG3-201ENST00000262327 PKD1P98161 4303 aa5.72□□□□□ -1.49
LIG3-201ENST00000262327 FAM229AH3BQW9 127 aa5.7□□□□□ -1.5
LIG3-201ENST00000262327 DMAC1Q96GE9 116 aa5.69□□□□□ -1.5
LIG3-201ENST00000262327 MIR22HGQ0VDD5 57 aa5.68□□□□□ -1.5
LIG3-201ENST00000262327 A0A1B0GU69 56 aa5.68□□□□□ -1.5
LIG3-201ENST00000262327 KRTAP16-1A8MUX0 517 aa5.67□□□□□ -1.5
LIG3-201ENST00000262327 SPINK1P00995 79 aa5.66□□□□□ -1.5
LIG3-201ENST00000262327 KRTAP1-4P0C5Y4 121 aa5.66□□□□□ -1.5
LIG3-201ENST00000262327 ROMO1P60602 79 aa5.66□□□□□ -1.5
LIG3-201ENST00000262327 PKHD1P08F94 4074 aa5.65□□□□□ -1.51
LIG3-201ENST00000262327 KMT2CQ8NEZ4 4911 aaKnown RBP5.64□□□□□ -1.51
LIG3-201ENST00000262327 UQCR11O14957 56 aa5.63□□□□□ -1.51
LIG3-201ENST00000262327 Q8N1X5 172 aa5.63□□□□□ -1.51
LIG3-201ENST00000262327 TYMSOSQ8TAI1 123 aa5.62□□□□□ -1.51
LIG3-201ENST00000262327 DYNC1H1Q14204 4646 aaKnown RBP5.6□□□□□ -1.51
LIG3-201ENST00000262327 SMR3BP02814 79 aaPredicted RBP5.59□□□□□ -1.52
LIG3-201ENST00000262327 FAT1Q14517 4588 aa5.57□□□□□ -1.52
LIG3-201ENST00000262327 C9orf92A6NGG3 77 aa5.56□□□□□ -1.52
LIG3-201ENST00000262327 KRTAP25-1Q3LHN0 102 aa5.56□□□□□ -1.52
LIG3-201ENST00000262327 P0C880 135 aa5.54□□□□□ -1.52
LIG3-201ENST00000262327 RYR3Q15413 4870 aa5.54□□□□□ -1.52
LIG3-201ENST00000262327 KRTAP10-4P60372 401 aaPredicted RBP5.54□□□□□ -1.52
LIG3-201ENST00000262327 APOBP04114 4563 aaKnown RBP5.52□□□□□ -1.53
LIG3-201ENST00000262327 LINC00304Q8N9R0 145 aa5.52□□□□□ -1.53
LIG3-201ENST00000262327 FLG2Q5D862 2391 aaPredicted RBP5.5□□□□□ -1.53
LIG3-201ENST00000262327 A0A0A0MQY5 61 aa5.49□□□□□ -1.53
LIG3-201ENST00000262327 A8MUU9 505 aa5.48□□□□□ -1.53
LIG3-201ENST00000262327 Q5VSD8 79 aa5.46□□□□□ -1.54
LIG3-201ENST00000262327 CRIPTQ9P021 101 aa5.44□□□□□ -1.54
LIG3-201ENST00000262327 KRTAP3-1Q9BYR8 98 aa5.42□□□□□ -1.54
LIG3-201ENST00000262327 HSPG2P98160 4391 aa5.39□□□□□ -1.55
LIG3-201ENST00000262327 RPS29P62273 56 aaKnown RBP5.39□□□□□ -1.55
LIG3-201ENST00000262327 RYR1P21817 5038 aa5.39□□□□□ -1.55
LIG3-201ENST00000262327 H0YAA0 97 aa5.39□□□□□ -1.55
LIG3-201ENST00000262327 PKHD1L1Q86WI1 4243 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms