RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 EIF4EBP3O60516 100 aaPredicted RBP2.66□□□□□ -1.98
VPS13C-202ENST00000261517 LCA10Q71F78 164 aa2.66□□□□□ -1.98
VPS13C-202ENST00000261517 LINC01558Q9Y6Z2 57 aa2.66□□□□□ -1.98
VPS13C-202ENST00000261517 KRTAP26-1Q6PEX3 210 aa2.66□□□□□ -1.98
VPS13C-202ENST00000261517 C4orf26Q17RF5 130 aa2.66□□□□□ -1.98
VPS13C-202ENST00000261517 CSAG1Q6PB30 78 aa2.65□□□□□ -1.98
VPS13C-202ENST00000261517 Q6ZR54 194 aa2.65□□□□□ -1.99
VPS13C-202ENST00000261517 MMP24-AS1A0A0U1RRL7 71 aa2.65□□□□□ -1.99
VPS13C-202ENST00000261517 A0A087X002 238 aa2.64□□□□□ -1.99
VPS13C-202ENST00000261517 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-202ENST00000261517 A0A1B0GU33 70 aa2.63□□□□□ -1.99
VPS13C-202ENST00000261517 KRTAP4-16G5E9R7 235 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-202ENST00000261517 S4R3F8 94 aa2.63□□□□□ -1.99
VPS13C-202ENST00000261517 SPINT4Q6UDR6 99 aa2.61□□□□□ -1.99
VPS13C-202ENST00000261517 SRRM2Q9UQ35 2752 aaKnown RBP2.61□□□□□ -1.99
VPS13C-202ENST00000261517 VPS13CQ709C8 3753 aa2.61□□□□□ -1.99
VPS13C-202ENST00000261517 LUZP6Q538Z0 58 aa2.61□□□□□ -1.99
VPS13C-202ENST00000261517 TRRAPQ9Y4A5 3859 aa2.61□□□□□ -1.99
VPS13C-202ENST00000261517 C9orf92A6NGG3 77 aa2.6□□□□□ -1.99
VPS13C-202ENST00000261517 Q5W150 140 aa2.6□□□□□ -1.99
VPS13C-202ENST00000261517 COL7A1Q02388 2944 aa2.6□□□□□ -1.99
VPS13C-202ENST00000261517 PRR26Q8N8Z3 221 aa2.59□□□□□ -1.99
VPS13C-202ENST00000261517 ZNF469Q96JG9 3925 aaPredicted RBP2.59□□□□□ -2
VPS13C-202ENST00000261517 Q8N9P0 234 aaPredicted RBP2.58□□□□□ -2
VPS13C-202ENST00000261517 Q5VSD8 79 aa2.57□□□□□ -2
VPS13C-202ENST00000261517 NOTCH2NLQ7Z3S9 236 aa2.57□□□□□ -2
VPS13C-202ENST00000261517 SMR3BP02814 79 aaPredicted RBP2.57□□□□□ -2
VPS13C-202ENST00000261517 SPINK7P58062 85 aa2.56□□□□□ -2
VPS13C-202ENST00000261517 KRTAP29-1A8MX34 341 aaPredicted RBP2.56□□□□□ -2
VPS13C-202ENST00000261517 M0QZ58 72 aa2.56□□□□□ -2
VPS13C-202ENST00000261517 Q6ZRN7 208 aaPredicted RBP2.55□□□□□ -2
VPS13C-202ENST00000261517 CAMK2N1Q7Z7J9 78 aa2.55□□□□□ -2
VPS13C-202ENST00000261517 ANAPC11Q9NYG5 84 aa2.55□□□□□ -2
VPS13C-202ENST00000261517 Q8N1X5 172 aa2.55□□□□□ -2
VPS13C-202ENST00000261517 RPL37P61927 97 aaKnown RBP2.54□□□□□ -2
VPS13C-202ENST00000261517 KRTAP1-5Q9BYS1 174 aa2.54□□□□□ -2
VPS13C-202ENST00000261517 KRTAP13-1Q8IUC0 172 aa2.53□□□□□ -2
VPS13C-202ENST00000261517 KRTAP10-1P60331 282 aa2.53□□□□□ -2
VPS13C-202ENST00000261517 Q8NDZ9 215 aa2.53□□□□□ -2
VPS13C-202ENST00000261517 H1FX-AS1Q4G0G2 97 aa2.53□□□□□ -2
VPS13C-202ENST00000261517 R4GN34 69 aa2.53□□□□□ -2.01
VPS13C-202ENST00000261517 Q5VV11 94 aa2.52□□□□□ -2.01
VPS13C-202ENST00000261517 PANO1I0J062 215 aa2.51□□□□□ -2.01
VPS13C-202ENST00000261517 ROMO1P60602 79 aa2.51□□□□□ -2.01
VPS13C-202ENST00000261517 A0A0G2JQZ4 141 aa2.5□□□□□ -2.01
VPS13C-202ENST00000261517 SPATA8Q6RVD6 105 aa2.5□□□□□ -2.01
VPS13C-202ENST00000261517 M0R2T5 61 aa2.5□□□□□ -2.01
VPS13C-202ENST00000261517 MEGF8Q7Z7M0 2845 aa2.5□□□□□ -2.01
VPS13C-202ENST00000261517 PLAC4Q8WY50 150 aa2.49□□□□□ -2.01
VPS13C-202ENST00000261517 A8MUU9 505 aa2.49□□□□□ -2.01
VPS13C-202ENST00000261517 KRTAP10-2P60368 255 aa2.49□□□□□ -2.01
VPS13C-202ENST00000261517 LINC01554Q52M75 96 aa2.49□□□□□ -2.01
VPS13C-202ENST00000261517 A0A0A0MQY5 61 aa2.49□□□□□ -2.01
VPS13C-202ENST00000261517 C20orf166-AS1Q96NR2 134 aa2.48□□□□□ -2.01
VPS13C-202ENST00000261517 A0A0D9SG42 100 aa2.48□□□□□ -2.01
VPS13C-202ENST00000261517 FBN3Q75N90 2809 aa2.46□□□□□ -2.02
VPS13C-202ENST00000261517 PP632Q6XCG6 107 aa2.46□□□□□ -2.02
VPS13C-202ENST00000261517 TPRXLQ17RH7 258 aa2.44□□□□□ -2.02
VPS13C-202ENST00000261517 AKAP9Q99996 3911 aa2.43□□□□□ -2.02
VPS13C-202ENST00000261517 ADM2Q7Z4H4 148 aa2.41□□□□□ -2.02
VPS13C-202ENST00000261517 KRTAP13-2Q52LG2 175 aa2.41□□□□□ -2.02
VPS13C-202ENST00000261517 KRTAP7-1Q8IUC3 87 aa2.39□□□□□ -2.03
VPS13C-202ENST00000261517 TNP1P09430 55 aa2.39□□□□□ -2.03
VPS13C-202ENST00000261517 CYSTM1Q9H1C7 97 aa2.38□□□□□ -2.03
VPS13C-202ENST00000261517 A6NN06 94 aa2.36□□□□□ -2.03
VPS13C-202ENST00000261517 KRTAP25-1Q3LHN0 102 aa2.36□□□□□ -2.03
VPS13C-202ENST00000261517 KRTAP1-4P0C5Y4 121 aa2.35□□□□□ -2.03
VPS13C-202ENST00000261517 KRTAP11-1Q8IUC1 163 aa2.35□□□□□ -2.03
VPS13C-202ENST00000261517 PRO2289Q9P1D8 64 aa2.33□□□□□ -2.04
VPS13C-202ENST00000261517 H0YAA0 97 aa2.32□□□□□ -2.04
VPS13C-202ENST00000261517 XP32Q5T750 250 aa2.32□□□□□ -2.04
VPS13C-202ENST00000261517 ANK2Q01484 3957 aa2.31□□□□□ -2.04
VPS13C-202ENST00000261517 ANK3Q12955 4377 aaKnown RBP2.31□□□□□ -2.04
VPS13C-202ENST00000261517 KRTAP13-3Q3SY46 172 aa2.3□□□□□ -2.04
VPS13C-202ENST00000261517 KRTAP16-1A8MUX0 517 aa2.3□□□□□ -2.04
VPS13C-202ENST00000261517 CSMD3Q7Z407 3707 aa2.28□□□□□ -2.04
VPS13C-202ENST00000261517 A0A1B0GVY2 172 aa2.28□□□□□ -2.04
VPS13C-202ENST00000261517 PRAC1Q96KF2 57 aa2.28□□□□□ -2.05
VPS13C-202ENST00000261517 KRTAP10-8P60410 259 aa2.27□□□□□ -2.05
VPS13C-202ENST00000261517 H3BS24 57 aa2.24□□□□□ -2.05
VPS13C-202ENST00000261517 PRKDCP78527 4128 aaKnown RBP2.21□□□□□ -2.06
VPS13C-202ENST00000261517 A8MU10 97 aa2.2□□□□□ -2.06
VPS13C-202ENST00000261517 P0C880 135 aa2.19□□□□□ -2.06
VPS13C-202ENST00000261517 KRTAP23-1A1A580 65 aa2.16□□□□□ -2.06
VPS13C-202ENST00000261517 LYSTQ99698 3801 aa2.16□□□□□ -2.06
VPS13C-202ENST00000261517 KRTAP13-4Q3LI77 160 aa2.16□□□□□ -2.06
VPS13C-202ENST00000261517 KRTAP10-10P60014 251 aa2.15□□□□□ -2.07
VPS13C-202ENST00000261517 KMT2AQ03164 3969 aa2.13□□□□□ -2.07
VPS13C-202ENST00000261517 C10orf95Q9H7T3 257 aa2.12□□□□□ -2.07
VPS13C-202ENST00000261517 DNAH3Q8TD57 4116 aa2.12□□□□□ -2.07
VPS13C-202ENST00000261517 HUWE1Q7Z6Z7 4374 aaKnown RBP2.11□□□□□ -2.07
VPS13C-202ENST00000261517 NDUFAF8A1L188 74 aa2.11□□□□□ -2.07
VPS13C-202ENST00000261517 DNAH1Q9P2D7 4330 aa2.1□□□□□ -2.07
VPS13C-202ENST00000261517 DNAH9Q9NYC9 4486 aa2.09□□□□□ -2.07
VPS13C-202ENST00000261517 DNHD1Q96M86 4753 aa2.09□□□□□ -2.07
VPS13C-202ENST00000261517 CMYA5Q8N3K9 4069 aa2.09□□□□□ -2.07
VPS13C-202ENST00000261517 STARD9Q9P2P6 4700 aa2.07□□□□□ -2.08
VPS13C-202ENST00000261517 KRTAP12-1P59990 96 aa2.07□□□□□ -2.08
VPS13C-202ENST00000261517 DNAH7Q8WXX0 4024 aa2.06□□□□□ -2.08
VPS13C-202ENST00000261517 ALMS1Q8TCU4 4167 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms