RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PLECQ15149 4684 aaKnown RBP4.36□□□□□ -1.71
CSDE1-201ENST00000261443 K7EIL1 84 aa4.35□□□□□ -1.71
CSDE1-201ENST00000261443 A0A1B0GU69 56 aa4.35□□□□□ -1.71
CSDE1-201ENST00000261443 RTL8CO15255 209 aa4.34□□□□□ -1.71
CSDE1-201ENST00000261443 A0A087X002 238 aa4.34□□□□□ -1.72
CSDE1-201ENST00000261443 NOTCH2NLQ7Z3S9 236 aa4.34□□□□□ -1.72
CSDE1-201ENST00000261443 SPATA8Q6RVD6 105 aa4.33□□□□□ -1.72
CSDE1-201ENST00000261443 Q5W150 140 aa4.32□□□□□ -1.72
CSDE1-201ENST00000261443 ALMS1Q8TCU4 4167 aa4.32□□□□□ -1.72
CSDE1-201ENST00000261443 MIR22HGQ0VDD5 57 aa4.31□□□□□ -1.72
CSDE1-201ENST00000261443 DNAH2Q9P225 4427 aa4.31□□□□□ -1.72
CSDE1-201ENST00000261443 PRKDCP78527 4128 aaKnown RBP4.3□□□□□ -1.72
CSDE1-201ENST00000261443 UQCR11O14957 56 aa4.3□□□□□ -1.72
CSDE1-201ENST00000261443 CSAG1Q6PB30 78 aa4.3□□□□□ -1.72
CSDE1-201ENST00000261443 KRTAP13-1Q8IUC0 172 aa4.3□□□□□ -1.72
CSDE1-201ENST00000261443 DMAC1Q96GE9 116 aa4.29□□□□□ -1.72
CSDE1-201ENST00000261443 STARD9Q9P2P6 4700 aa4.29□□□□□ -1.72
CSDE1-201ENST00000261443 TGP01266 2768 aa4.29□□□□□ -1.72
CSDE1-201ENST00000261443 KRTAP13-3Q3SY46 172 aa4.29□□□□□ -1.72
CSDE1-201ENST00000261443 RETNLBQ9BQ08 111 aa4.28□□□□□ -1.72
CSDE1-201ENST00000261443 KRTAP1-5Q9BYS1 174 aa4.28□□□□□ -1.72
CSDE1-201ENST00000261443 SPINK6Q6UWN8 80 aa4.28□□□□□ -1.72
CSDE1-201ENST00000261443 C14orf177Q52M58 125 aa4.27□□□□□ -1.73
CSDE1-201ENST00000261443 VPS13DQ5THJ4 4388 aa4.27□□□□□ -1.73
CSDE1-201ENST00000261443 FRAS1Q86XX4 4008 aa4.27□□□□□ -1.73
CSDE1-201ENST00000261443 KRTAP24-1Q3LI83 254 aa4.27□□□□□ -1.73
CSDE1-201ENST00000261443 LINC00483Q53H64 154 aa4.26□□□□□ -1.73
CSDE1-201ENST00000261443 HECTD4Q9Y4D8 3996 aa4.26□□□□□ -1.73
CSDE1-201ENST00000261443 DNAH8Q96JB1 4490 aa4.25□□□□□ -1.73
CSDE1-201ENST00000261443 KMT2AQ03164 3969 aa4.25□□□□□ -1.73
CSDE1-201ENST00000261443 WWC2-AS2Q96NR7 200 aa4.25□□□□□ -1.73
CSDE1-201ENST00000261443 PANO1I0J062 215 aa4.25□□□□□ -1.73
CSDE1-201ENST00000261443 ANAPC11Q9NYG5 84 aa4.24□□□□□ -1.73
CSDE1-201ENST00000261443 ZNF706Q9Y5V0 76 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-201ENST00000261443 DNAH17Q9UFH2 4485 aa4.23□□□□□ -1.73
CSDE1-201ENST00000261443 FLG2Q5D862 2391 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-201ENST00000261443 KRTAP3-3Q9BYR6 98 aa4.22□□□□□ -1.73
CSDE1-201ENST00000261443 KRTAP3-2Q9BYR7 98 aa4.22□□□□□ -1.73
CSDE1-201ENST00000261443 UBE2DNLQ8IWF7 75 aa4.22□□□□□ -1.73
CSDE1-201ENST00000261443 ZNF861PO60384 105 aa4.21□□□□□ -1.74
CSDE1-201ENST00000261443 FAM229AH3BQW9 127 aa4.21□□□□□ -1.74
CSDE1-201ENST00000261443 DNHD1Q96M86 4753 aa4.2□□□□□ -1.74
CSDE1-201ENST00000261443 FBN3Q75N90 2809 aa4.2□□□□□ -1.74
CSDE1-201ENST00000261443 IGKV2-30P06310 120 aa4.2□□□□□ -1.74
CSDE1-201ENST00000261443 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.19□□□□□ -1.74
CSDE1-201ENST00000261443 C1orf134Q5TEV5 83 aa4.19□□□□□ -1.74
CSDE1-201ENST00000261443 CIRBP-AS1Q8TBR5 109 aa4.18□□□□□ -1.74
CSDE1-201ENST00000261443 SPACA4Q8TDM5 124 aa4.18□□□□□ -1.74
CSDE1-201ENST00000261443 DNAH6Q9C0G6 4158 aa4.18□□□□□ -1.74
CSDE1-201ENST00000261443 PSORS1C2Q9UIG4 136 aa4.17□□□□□ -1.74
CSDE1-201ENST00000261443 IGLV7-43P04211 117 aa4.17□□□□□ -1.74
CSDE1-201ENST00000261443 IGLV5-52A0A0A0MRZ9 124 aa4.16□□□□□ -1.74
CSDE1-201ENST00000261443 DNAH11Q96DT5 4516 aa4.16□□□□□ -1.74
CSDE1-201ENST00000261443 DNAH5Q8TE73 4624 aa4.16□□□□□ -1.74
CSDE1-201ENST00000261443 IGKV2D-30A0A075B6S6 120 aa4.15□□□□□ -1.75
CSDE1-201ENST00000261443 DMBT1Q9UGM3 2413 aaPredicted RBP4.14□□□□□ -1.75
CSDE1-201ENST00000261443 SPINK1P00995 79 aa4.14□□□□□ -1.75
CSDE1-201ENST00000261443 KRTAP25-1Q3LHN0 102 aa4.13□□□□□ -1.75
CSDE1-201ENST00000261443 ROMO1P60602 79 aa4.12□□□□□ -1.75
CSDE1-201ENST00000261443 APLNQ9ULZ1 77 aa4.12□□□□□ -1.75
CSDE1-201ENST00000261443 NBDYA0A0U1RRE5 68 aa4.11□□□□□ -1.75
CSDE1-201ENST00000261443 MEGF8Q7Z7M0 2845 aa4.11□□□□□ -1.75
CSDE1-201ENST00000261443 FAT2Q9NYQ8 4349 aa4.11□□□□□ -1.75
CSDE1-201ENST00000261443 A8MUU9 505 aa4.11□□□□□ -1.75
CSDE1-201ENST00000261443 PKD1P98161 4303 aa4.1□□□□□ -1.75
CSDE1-201ENST00000261443 HYDINQ4G0P3 5121 aa4.1□□□□□ -1.75
CSDE1-201ENST00000261443 Q6ZRN7 208 aaPredicted RBP4.1□□□□□ -1.75
CSDE1-201ENST00000261443 SSBP3-AS1Q7Z2R9 100 aa4.1□□□□□ -1.75
CSDE1-201ENST00000261443 LY6G6CO95867 125 aa4.09□□□□□ -1.75
CSDE1-201ENST00000261443 LINC00304Q8N9R0 145 aa4.09□□□□□ -1.76
CSDE1-201ENST00000261443 H0YAA0 97 aa4.08□□□□□ -1.76
CSDE1-201ENST00000261443 KRTAP16-1A8MUX0 517 aa4.08□□□□□ -1.76
CSDE1-201ENST00000261443 Q6ZSA8 131 aa4.08□□□□□ -1.76
CSDE1-201ENST00000261443 CRIPTQ9P021 101 aa4.08□□□□□ -1.76
CSDE1-201ENST00000261443 Q8N1X5 172 aa4.06□□□□□ -1.76
CSDE1-201ENST00000261443 LRP1BQ9NZR2 4599 aa4.06□□□□□ -1.76
CSDE1-201ENST00000261443 A0A087WTM6 91 aa4.06□□□□□ -1.76
CSDE1-201ENST00000261443 A0A1B0GU33 70 aa4.03□□□□□ -1.76
CSDE1-201ENST00000261443 TYMSOSQ8TAI1 123 aa4.02□□□□□ -1.77
CSDE1-201ENST00000261443 P0C880 135 aa4□□□□□ -1.77
CSDE1-201ENST00000261443 H1FX-AS1Q4G0G2 97 aa4□□□□□ -1.77
CSDE1-201ENST00000261443 KRTAP13-2Q52LG2 175 aa4□□□□□ -1.77
CSDE1-201ENST00000261443 K7ERS5 55 aa3.99□□□□□ -1.77
CSDE1-201ENST00000261443 VPS13BQ7Z7G8 4022 aa3.99□□□□□ -1.77
CSDE1-201ENST00000261443 PKHD1P08F94 4074 aa3.99□□□□□ -1.77
CSDE1-201ENST00000261443 NUPR2A6NF83 97 aa3.97□□□□□ -1.77
CSDE1-201ENST00000261443 SACSQ9NZJ4 4579 aa3.97□□□□□ -1.77
CSDE1-201ENST00000261443 SPINT4Q6UDR6 99 aa3.93□□□□□ -1.78
CSDE1-201ENST00000261443 COX6B2Q6YFQ2 88 aa3.91□□□□□ -1.78
CSDE1-201ENST00000261443 KRTAP3-1Q9BYR8 98 aa3.91□□□□□ -1.78
CSDE1-201ENST00000261443 KRTAP1-4P0C5Y4 121 aa3.89□□□□□ -1.79
CSDE1-201ENST00000261443 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
CSDE1-201ENST00000261443 TPRXLQ17RH7 258 aa3.87□□□□□ -1.79
CSDE1-201ENST00000261443 NDUFAF8A1L188 74 aa3.86□□□□□ -1.79
CSDE1-201ENST00000261443 DYNC1H1Q14204 4646 aaKnown RBP3.86□□□□□ -1.79
CSDE1-201ENST00000261443 RPL37P61927 97 aaKnown RBP3.86□□□□□ -1.79
CSDE1-201ENST00000261443 APOBP04114 4563 aaKnown RBP3.86□□□□□ -1.79
CSDE1-201ENST00000261443 FAT1Q14517 4588 aa3.85□□□□□ -1.79
CSDE1-201ENST00000261443 KRTAP10-2P60368 255 aa3.84□□□□□ -1.79
CSDE1-201ENST00000261443 C9orf92A6NGG3 77 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms