RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TGP01266 2768 aa2.77□□□□□ -1.97
VPS13C-201ENST00000249837 CSMD1Q96PZ7 3565 aa2.77□□□□□ -1.97
VPS13C-201ENST00000249837 RBM12B-AS1Q9P1G2 102 aa2.76□□□□□ -1.97
VPS13C-201ENST00000249837 DCHS1Q96JQ0 3298 aa2.76□□□□□ -1.97
VPS13C-201ENST00000249837 PLAC8Q9NZF1 115 aa2.76□□□□□ -1.97
VPS13C-201ENST00000249837 A8MU10 97 aa2.76□□□□□ -1.97
VPS13C-201ENST00000249837 Q5W150 140 aa2.76□□□□□ -1.97
VPS13C-201ENST00000249837 WWC2-AS2Q96NR7 200 aa2.75□□□□□ -1.97
VPS13C-201ENST00000249837 SVEP1Q4LDE5 3571 aa2.75□□□□□ -1.97
VPS13C-201ENST00000249837 CELSR1Q9NYQ6 3014 aa2.74□□□□□ -1.97
VPS13C-201ENST00000249837 LCE6AA0A183 80 aa2.74□□□□□ -1.97
VPS13C-201ENST00000249837 KRTAP10-1P60331 282 aa2.73□□□□□ -1.97
VPS13C-201ENST00000249837 A0A0D9SG42 100 aa2.73□□□□□ -1.97
VPS13C-201ENST00000249837 NBPF19A0A087WUL8 3843 aa2.72□□□□□ -1.97
VPS13C-201ENST00000249837 Q6ZR54 194 aa2.72□□□□□ -1.97
VPS13C-201ENST00000249837 LINC00483Q53H64 154 aa2.71□□□□□ -1.98
VPS13C-201ENST00000249837 KRTAP10-2P60368 255 aa2.71□□□□□ -1.98
VPS13C-201ENST00000249837 A0A1B0GU33 70 aa2.7□□□□□ -1.98
VPS13C-201ENST00000249837 FBN3Q75N90 2809 aa2.69□□□□□ -1.98
VPS13C-201ENST00000249837 OTOGQ6ZRI0 2925 aa2.69□□□□□ -1.98
VPS13C-201ENST00000249837 CSAG1Q6PB30 78 aa2.69□□□□□ -1.98
VPS13C-201ENST00000249837 DMAC1Q96GE9 116 aa2.69□□□□□ -1.98
VPS13C-201ENST00000249837 FBN1P35555 2871 aaKnown RBP2.68□□□□□ -1.98
VPS13C-201ENST00000249837 KRTAP13-1Q8IUC0 172 aa2.68□□□□□ -1.98
VPS13C-201ENST00000249837 SPINT4Q6UDR6 99 aa2.68□□□□□ -1.98
VPS13C-201ENST00000249837 SRRM2Q9UQ35 2752 aaKnown RBP2.68□□□□□ -1.98
VPS13C-201ENST00000249837 ZFHX3Q15911 3703 aa2.67□□□□□ -1.98
VPS13C-201ENST00000249837 ADM2Q7Z4H4 148 aa2.67□□□□□ -1.98
VPS13C-201ENST00000249837 Q6ZRN7 208 aaPredicted RBP2.67□□□□□ -1.98
VPS13C-201ENST00000249837 CRIPTQ9P021 101 aa2.66□□□□□ -1.98
VPS13C-201ENST00000249837 KRTAP13-2Q52LG2 175 aa2.66□□□□□ -1.98
VPS13C-201ENST00000249837 A6NN06 94 aa2.66□□□□□ -1.98
VPS13C-201ENST00000249837 VPS13CQ709C8 3753 aa2.65□□□□□ -1.99
VPS13C-201ENST00000249837 LINC01554Q52M75 96 aa2.64□□□□□ -1.99
VPS13C-201ENST00000249837 TRRAPQ9Y4A5 3859 aa2.64□□□□□ -1.99
VPS13C-201ENST00000249837 MUC3AQ02505 3323 aa2.64□□□□□ -1.99
VPS13C-201ENST00000249837 SPATA8Q6RVD6 105 aa2.62□□□□□ -1.99
VPS13C-201ENST00000249837 H1FX-AS1Q4G0G2 97 aa2.61□□□□□ -1.99
VPS13C-201ENST00000249837 ASB16-AS1Q495Z4 193 aa2.61□□□□□ -1.99
VPS13C-201ENST00000249837 H3BS24 57 aa2.61□□□□□ -1.99
VPS13C-201ENST00000249837 CUBNO60494 3623 aa2.61□□□□□ -1.99
VPS13C-201ENST00000249837 BSNQ9UPA5 3926 aa2.58□□□□□ -2
VPS13C-201ENST00000249837 COL7A1Q02388 2944 aa2.58□□□□□ -2
VPS13C-201ENST00000249837 AKAP9Q99996 3911 aa2.58□□□□□ -2
VPS13C-201ENST00000249837 ANK3Q12955 4377 aaKnown RBP2.57□□□□□ -2
VPS13C-201ENST00000249837 MEGF8Q7Z7M0 2845 aa2.57□□□□□ -2
VPS13C-201ENST00000249837 J3QL48 77 aa2.56□□□□□ -2
VPS13C-201ENST00000249837 S4R3F8 94 aa2.56□□□□□ -2
VPS13C-201ENST00000249837 COX6B2Q6YFQ2 88 aa2.56□□□□□ -2
VPS13C-201ENST00000249837 ROMO1P60602 79 aa2.54□□□□□ -2
VPS13C-201ENST00000249837 RPL37P61927 97 aaKnown RBP2.53□□□□□ -2
VPS13C-201ENST00000249837 Q6ZSA8 131 aa2.53□□□□□ -2
VPS13C-201ENST00000249837 A8MUU9 505 aa2.51□□□□□ -2.01
VPS13C-201ENST00000249837 KRTAP13-3Q3SY46 172 aa2.51□□□□□ -2.01
VPS13C-201ENST00000249837 KRTAP25-1Q3LHN0 102 aa2.5□□□□□ -2.01
VPS13C-201ENST00000249837 KRTAP1-4P0C5Y4 121 aa2.5□□□□□ -2.01
VPS13C-201ENST00000249837 Q5VSD8 79 aa2.5□□□□□ -2.01
VPS13C-201ENST00000249837 KRTAP16-1A8MUX0 517 aa2.49□□□□□ -2.01
VPS13C-201ENST00000249837 ZNF469Q96JG9 3925 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-201ENST00000249837 CAMK2N1Q7Z7J9 78 aa2.48□□□□□ -2.01
VPS13C-201ENST00000249837 C20orf166-AS1Q96NR2 134 aa2.48□□□□□ -2.01
VPS13C-201ENST00000249837 H0YAA0 97 aa2.47□□□□□ -2.01
VPS13C-201ENST00000249837 M0QZ58 72 aa2.47□□□□□ -2.01
VPS13C-201ENST00000249837 R4GN34 69 aa2.47□□□□□ -2.01
VPS13C-201ENST00000249837 CSMD3Q7Z407 3707 aa2.46□□□□□ -2.01
VPS13C-201ENST00000249837 RPS29P62273 56 aaKnown RBP2.46□□□□□ -2.02
VPS13C-201ENST00000249837 CSMD2Q7Z408 3487 aa2.45□□□□□ -2.02
VPS13C-201ENST00000249837 C10orf95Q9H7T3 257 aa2.44□□□□□ -2.02
VPS13C-201ENST00000249837 LUZP6Q538Z0 58 aa2.44□□□□□ -2.02
VPS13C-201ENST00000249837 SEC61BP60468 96 aaKnown RBP2.42□□□□□ -2.02
VPS13C-201ENST00000249837 NDUFAF8A1L188 74 aa2.41□□□□□ -2.02
VPS13C-201ENST00000249837 P0C880 135 aa2.4□□□□□ -2.03
VPS13C-201ENST00000249837 M0R2T5 61 aa2.39□□□□□ -2.03
VPS13C-201ENST00000249837 KRTAP3-1Q9BYR8 98 aa2.38□□□□□ -2.03
VPS13C-201ENST00000249837 XP32Q5T750 250 aa2.38□□□□□ -2.03
VPS13C-201ENST00000249837 HUWE1Q7Z6Z7 4374 aaKnown RBP2.38□□□□□ -2.03
VPS13C-201ENST00000249837 KRTAP10-8P60410 259 aa2.34□□□□□ -2.03
VPS13C-201ENST00000249837 TPRXLQ17RH7 258 aa2.32□□□□□ -2.04
VPS13C-201ENST00000249837 PLAC4Q8WY50 150 aa2.31□□□□□ -2.04
VPS13C-201ENST00000249837 DNAH1Q9P2D7 4330 aa2.31□□□□□ -2.04
VPS13C-201ENST00000249837 A0A0A0MQY5 61 aa2.31□□□□□ -2.04
VPS13C-201ENST00000249837 KRTAP13-4Q3LI77 160 aa2.31□□□□□ -2.04
VPS13C-201ENST00000249837 A0A1B0GVY2 172 aa2.31□□□□□ -2.04
VPS13C-201ENST00000249837 KRTAP12-2P59991 146 aa2.3□□□□□ -2.04
VPS13C-201ENST00000249837 KRTAP21-3Q3LHN1 58 aa2.29□□□□□ -2.04
VPS13C-201ENST00000249837 KRTAP10-6P60371 365 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-201ENST00000249837 DNAH9Q9NYC9 4486 aa2.28□□□□□ -2.04
VPS13C-201ENST00000249837 ALMS1Q8TCU4 4167 aa2.28□□□□□ -2.04
VPS13C-201ENST00000249837 DNAH2Q9P225 4427 aa2.27□□□□□ -2.05
VPS13C-201ENST00000249837 KRTAP12-1P59990 96 aa2.26□□□□□ -2.05
VPS13C-201ENST00000249837 KRTAP3-2Q9BYR7 98 aa2.25□□□□□ -2.05
VPS13C-201ENST00000249837 TNP1P09430 55 aa2.24□□□□□ -2.05
VPS13C-201ENST00000249837 LYSTQ99698 3801 aa2.24□□□□□ -2.05
VPS13C-201ENST00000249837 KRTAP3-3Q9BYR6 98 aa2.24□□□□□ -2.05
VPS13C-201ENST00000249837 DNAH10Q8IVF4 4471 aa2.22□□□□□ -2.05
VPS13C-201ENST00000249837 CMYA5Q8N3K9 4069 aa2.22□□□□□ -2.05
VPS13C-201ENST00000249837 KRTAP10-4P60372 401 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-201ENST00000249837 DNAH3Q8TD57 4116 aa2.21□□□□□ -2.06
VPS13C-201ENST00000249837 PP632Q6XCG6 107 aa2.2□□□□□ -2.06
VPS13C-201ENST00000249837 HECTD4Q9Y4D8 3996 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms