RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 Q5VSD8 79 aa7.63□□□□□ -1.19
HIF3A-201ENST00000244302 ZCCHC13Q8WW36 166 aaKnown RBP7.63□□□□□ -1.19
HIF3A-201ENST00000244302 ZNF706Q9Y5V0 76 aaPredicted RBP7.63□□□□□ -1.19
HIF3A-201ENST00000244302 FAT3Q8TDW7 4589 aa7.62□□□□□ -1.19
HIF3A-201ENST00000244302 PLA2G1BP04054 148 aaKnown RBP7.61□□□□□ -1.19
HIF3A-201ENST00000244302 SPINK6Q6UWN8 80 aa7.61□□□□□ -1.19
HIF3A-201ENST00000244302 PRO0628Q9UI54 55 aa7.61□□□□□ -1.19
HIF3A-201ENST00000244302 ABCA13Q86UQ4 5058 aa7.6□□□□□ -1.19
HIF3A-201ENST00000244302 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
HIF3A-201ENST00000244302 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
HIF3A-201ENST00000244302 TNXBP22105 4242 aa7.59□□□□□ -1.19
HIF3A-201ENST00000244302 PRR26Q8N8Z3 221 aa7.58□□□□□ -1.2
HIF3A-201ENST00000244302 NDUFB1O75438 58 aa7.58□□□□□ -1.2
HIF3A-201ENST00000244302 A0A087WSZ3 146 aa7.57□□□□□ -1.2
HIF3A-201ENST00000244302 HERC2O95714 4834 aa7.57□□□□□ -1.2
HIF3A-201ENST00000244302 hDV103S1A0JD37 113 aa7.56□□□□□ -1.2
HIF3A-201ENST00000244302 FAM229BQ4G0N7 80 aa7.56□□□□□ -1.2
HIF3A-201ENST00000244302 CYP4F30PQ9H0H9 118 aa7.56□□□□□ -1.2
HIF3A-201ENST00000244302 DEFB116Q30KQ4 102 aa7.55□□□□□ -1.2
HIF3A-201ENST00000244302 MP68P56378 58 aa7.55□□□□□ -1.2
HIF3A-201ENST00000244302 H3BPC8 53 aa7.54□□□□□ -1.2
HIF3A-201ENST00000244302 Q8N1X5 172 aa7.54□□□□□ -1.2
HIF3A-201ENST00000244302 KRTAP29-1A8MX34 341 aaPredicted RBP7.52□□□□□ -1.2
HIF3A-201ENST00000244302 WFDC13Q8IUB5 93 aa7.51□□□□□ -1.21
HIF3A-201ENST00000244302 PRR15Q8IV56 129 aa7.51□□□□□ -1.21
HIF3A-201ENST00000244302 C1orf64Q8NEQ6 169 aa7.51□□□□□ -1.21
HIF3A-201ENST00000244302 MPLKIPQ8TAP9 179 aa7.51□□□□□ -1.21
HIF3A-201ENST00000244302 A8MWP4 228 aa7.5□□□□□ -1.21
HIF3A-201ENST00000244302 TYMSOSQ8TAI1 123 aa7.49□□□□□ -1.21
HIF3A-201ENST00000244302 TRAV22A0A0B4J277 110 aa7.49□□□□□ -1.21
HIF3A-201ENST00000244302 Q1T7F1 81 aa7.49□□□□□ -1.21
HIF3A-201ENST00000244302 CASC2Q6XLA1 102 aa7.49□□□□□ -1.21
HIF3A-201ENST00000244302 LINC00472Q9H8W2 130 aa7.49□□□□□ -1.21
HIF3A-201ENST00000244302 SSBP3-AS1Q7Z2R9 100 aa7.48□□□□□ -1.21
HIF3A-201ENST00000244302 SPANXA2-OT1Q8N9U9 137 aa7.48□□□□□ -1.21
HIF3A-201ENST00000244302 DMBT1Q9UGM3 2413 aaPredicted RBP7.45□□□□□ -1.22
HIF3A-201ENST00000244302 H0Y9P7 68 aa7.45□□□□□ -1.22
HIF3A-201ENST00000244302 BRK1Q8WUW1 75 aa7.45□□□□□ -1.22
HIF3A-201ENST00000244302 LINC00208Q96KT6 92 aa7.44□□□□□ -1.22
HIF3A-201ENST00000244302 V9GYY9 64 aa7.43□□□□□ -1.22
HIF3A-201ENST00000244302 Q96NJ1 140 aa7.41□□□□□ -1.22
HIF3A-201ENST00000244302 MMP24-AS1A0A0U1RRL7 71 aa7.4□□□□□ -1.23
HIF3A-201ENST00000244302 KRTAP10-8P60410 259 aa7.39□□□□□ -1.23
HIF3A-201ENST00000244302 LINC00304Q8N9R0 145 aa7.39□□□□□ -1.23
HIF3A-201ENST00000244302 PCLOQ9Y6V0 5065 aa7.38□□□□□ -1.23
HIF3A-201ENST00000244302 TP53AIP1Q9HCN2 124 aa7.37□□□□□ -1.23
HIF3A-201ENST00000244302 MT1HL1P0DM35 61 aa7.37□□□□□ -1.23
HIF3A-201ENST00000244302 PRR4Q16378 134 aa7.37□□□□□ -1.23
HIF3A-201ENST00000244302 ASB16-AS1Q495Z4 193 aa7.36□□□□□ -1.23
HIF3A-201ENST00000244302 CD164Q04900 197 aa7.36□□□□□ -1.23
HIF3A-201ENST00000244302 C4orf48Q5BLP8 95 aa7.36□□□□□ -1.23
HIF3A-201ENST00000244302 C1orf195Q5TG92 126 aa7.34□□□□□ -1.23
HIF3A-201ENST00000244302 RETNLBQ9BQ08 111 aa7.34□□□□□ -1.23
HIF3A-201ENST00000244302 SPINK1P00995 79 aa7.32□□□□□ -1.24
HIF3A-201ENST00000244302 IGLV7-46A0A075B6I9 117 aa7.31□□□□□ -1.24
HIF3A-201ENST00000244302 LIMD2Q9BT23 127 aa7.31□□□□□ -1.24
HIF3A-201ENST00000244302 NOTCH2NLQ7Z3S9 236 aa7.31□□□□□ -1.24
HIF3A-201ENST00000244302 C8orf17Q9NRJ1 99 aa7.31□□□□□ -1.24
HIF3A-201ENST00000244302 A0A1B0GVX0 72 aa7.29□□□□□ -1.24
HIF3A-201ENST00000244302 PSPHP1O15172 72 aa7.29□□□□□ -1.24
HIF3A-201ENST00000244302 SPAG11AQ6PDA7 123 aa7.27□□□□□ -1.25
HIF3A-201ENST00000244302 Q8N9P0 234 aaPredicted RBP7.27□□□□□ -1.25
HIF3A-201ENST00000244302 IGHV6-1A0A0B4J1U7 121 aa7.26□□□□□ -1.25
HIF3A-201ENST00000244302 HERC1Q15751 4861 aa7.26□□□□□ -1.25
HIF3A-201ENST00000244302 A8MUN3 132 aa7.25□□□□□ -1.25
HIF3A-201ENST00000244302 COA5Q86WW8 74 aa7.25□□□□□ -1.25
HIF3A-201ENST00000244302 Q5VV11 94 aa7.24□□□□□ -1.25
HIF3A-201ENST00000244302 MRPL34Q9BQ48 92 aaKnown RBP7.24□□□□□ -1.25
HIF3A-201ENST00000244302 LPAP08519 4548 aa7.23□□□□□ -1.25
HIF3A-201ENST00000244302 LOC101927531A0A1B0GV80 90 aa7.2□□□□□ -1.26
HIF3A-201ENST00000244302 NDUFS5O43920 106 aa7.2□□□□□ -1.26
HIF3A-201ENST00000244302 RPS29P62273 56 aaKnown RBP7.2□□□□□ -1.26
HIF3A-201ENST00000244302 PCOTHQ58A44 107 aa7.19□□□□□ -1.26
HIF3A-201ENST00000244302 Q75L30 129 aa7.19□□□□□ -1.26
HIF3A-201ENST00000244302 PRR15LQ9BU68 103 aa7.19□□□□□ -1.26
HIF3A-201ENST00000244302 CHKB-CPT1BH3BT56 60 aa7.17□□□□□ -1.26
HIF3A-201ENST00000244302 C9orf92A6NGG3 77 aa7.16□□□□□ -1.26
HIF3A-201ENST00000244302 C8orf87E5RJ46 101 aa7.15□□□□□ -1.27
HIF3A-201ENST00000244302 LINC01558Q9Y6Z2 57 aa7.15□□□□□ -1.27
HIF3A-201ENST00000244302 J3QL48 77 aa7.13□□□□□ -1.27
HIF3A-201ENST00000244302 LRP2P98164 4655 aa7.13□□□□□ -1.27
HIF3A-201ENST00000244302 LINC00313P59037 77 aa7.12□□□□□ -1.27
HIF3A-201ENST00000244302 PMAIP1Q13794 54 aa7.12□□□□□ -1.27
HIF3A-201ENST00000244302 KRTAP13-3Q3SY46 172 aa7.11□□□□□ -1.27
HIF3A-201ENST00000244302 KRTAP16-1A8MUX0 517 aa7.1□□□□□ -1.27
HIF3A-201ENST00000244302 HRES1P13985 223 aa7.1□□□□□ -1.27
HIF3A-201ENST00000244302 A6NED7 52 aa7.08□□□□□ -1.28
HIF3A-201ENST00000244302 ATP11AUNQ6ZP68 121 aa7.07□□□□□ -1.28
HIF3A-201ENST00000244302 Q5W150 140 aa7.06□□□□□ -1.28
HIF3A-201ENST00000244302 CDC42SE1Q9NRR8 79 aa7.06□□□□□ -1.28
HIF3A-201ENST00000244302 ACYP2P14621 99 aa7.03□□□□□ -1.28
HIF3A-201ENST00000244302 LCA10Q71F78 164 aa7.03□□□□□ -1.28
HIF3A-201ENST00000244302 HMCN2Q8NDA2 5059 aa7.03□□□□□ -1.28
HIF3A-201ENST00000244302 A8MU10 97 aa7.03□□□□□ -1.28
HIF3A-201ENST00000244302 DMAC1Q96GE9 116 aa7□□□□□ -1.29
HIF3A-201ENST00000244302 SPTSSBQ8NFR3 76 aa6.97□□□□□ -1.29
HIF3A-201ENST00000244302 KTN1-AS1Q86SY8 53 aa6.97□□□□□ -1.29
HIF3A-201ENST00000244302 IGKV2-30P06310 120 aa6.96□□□□□ -1.3
HIF3A-201ENST00000244302 SEC61GP60059 68 aa6.96□□□□□ -1.3
HIF3A-201ENST00000244302 XP32Q5T750 250 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms