RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 TENM4Q6N022 2769 aa4.43□□□□□ -1.7
RIF1-201ENST00000243326 DMAC1Q96GE9 116 aa4.42□□□□□ -1.7
RIF1-201ENST00000243326 KRTAP29-1A8MX34 341 aaPredicted RBP4.42□□□□□ -1.7
RIF1-201ENST00000243326 COL7A1Q02388 2944 aa4.41□□□□□ -1.7
RIF1-201ENST00000243326 LINC00483Q53H64 154 aa4.41□□□□□ -1.7
RIF1-201ENST00000243326 Q6ZR54 194 aa4.41□□□□□ -1.7
RIF1-201ENST00000243326 KRTAP10-1P60331 282 aa4.41□□□□□ -1.7
RIF1-201ENST00000243326 PLAC8Q9NZF1 115 aa4.41□□□□□ -1.7
RIF1-201ENST00000243326 M0R2T5 61 aa4.4□□□□□ -1.7
RIF1-201ENST00000243326 KRTAP4-16G5E9R7 235 aaPredicted RBP4.38□□□□□ -1.71
RIF1-201ENST00000243326 KRTAP7-1Q8IUC3 87 aa4.38□□□□□ -1.71
RIF1-201ENST00000243326 M0QZ58 72 aa4.38□□□□□ -1.71
RIF1-201ENST00000243326 RANBP2P49792 3224 aaKnown RBP4.38□□□□□ -1.71
RIF1-201ENST00000243326 TENM2Q9NT68 2774 aa4.37□□□□□ -1.71
RIF1-201ENST00000243326 HRNRQ86YZ3 2850 aaPredicted RBP4.36□□□□□ -1.71
RIF1-201ENST00000243326 R4GN34 69 aa4.36□□□□□ -1.71
RIF1-201ENST00000243326 NDUFAF8A1L188 74 aa4.36□□□□□ -1.71
RIF1-201ENST00000243326 SPRR1BP22528 89 aa4.35□□□□□ -1.71
RIF1-201ENST00000243326 LAMA3Q16787 3333 aa4.35□□□□□ -1.71
RIF1-201ENST00000243326 RPL37P61927 97 aaKnown RBP4.35□□□□□ -1.71
RIF1-201ENST00000243326 USP34Q70CQ2 3546 aa4.34□□□□□ -1.71
RIF1-201ENST00000243326 KRTAP25-1Q3LHN0 102 aa4.34□□□□□ -1.71
RIF1-201ENST00000243326 COL6A3P12111 3177 aa4.33□□□□□ -1.72
RIF1-201ENST00000243326 KRTAP16-1A8MUX0 517 aa4.32□□□□□ -1.72
RIF1-201ENST00000243326 C10orf95Q9H7T3 257 aa4.31□□□□□ -1.72
RIF1-201ENST00000243326 UNC80Q8N2C7 3258 aa4.3□□□□□ -1.72
RIF1-201ENST00000243326 CELSR3Q9NYQ7 3312 aa4.28□□□□□ -1.72
RIF1-201ENST00000243326 OTOGQ6ZRI0 2925 aa4.26□□□□□ -1.73
RIF1-201ENST00000243326 Q5VSD8 79 aa4.25□□□□□ -1.73
RIF1-201ENST00000243326 KRTAP13-2Q52LG2 175 aa4.25□□□□□ -1.73
RIF1-201ENST00000243326 AKAP9Q99996 3911 aa4.23□□□□□ -1.73
RIF1-201ENST00000243326 MEGF8Q7Z7M0 2845 aa4.23□□□□□ -1.73
RIF1-201ENST00000243326 C20orf166-AS1Q96NR2 134 aa4.22□□□□□ -1.73
RIF1-201ENST00000243326 A8MUU9 505 aa4.22□□□□□ -1.73
RIF1-201ENST00000243326 LCE6AA0A183 80 aa4.21□□□□□ -1.73
RIF1-201ENST00000243326 NBPF19A0A087WUL8 3843 aa4.21□□□□□ -1.74
RIF1-201ENST00000243326 PLAC4Q8WY50 150 aa4.2□□□□□ -1.74
RIF1-201ENST00000243326 FBN1P35555 2871 aaKnown RBP4.19□□□□□ -1.74
RIF1-201ENST00000243326 VCANP13611 3396 aa4.18□□□□□ -1.74
RIF1-201ENST00000243326 MYO15AQ9UKN7 3530 aa4.17□□□□□ -1.74
RIF1-201ENST00000243326 A0A1B0GVY2 172 aa4.14□□□□□ -1.75
RIF1-201ENST00000243326 ASB16-AS1Q495Z4 193 aa4.14□□□□□ -1.75
RIF1-201ENST00000243326 SPEGQ15772 3267 aa4.13□□□□□ -1.75
RIF1-201ENST00000243326 KRTAP13-1Q8IUC0 172 aa4.11□□□□□ -1.75
RIF1-201ENST00000243326 SEC61BP60468 96 aaKnown RBP4.11□□□□□ -1.75
RIF1-201ENST00000243326 Q6ZRN7 208 aaPredicted RBP4.11□□□□□ -1.75
RIF1-201ENST00000243326 SPTBN5Q9NRC6 3674 aaKnown RBP4.1□□□□□ -1.75
RIF1-201ENST00000243326 H0YAA0 97 aa4.1□□□□□ -1.75
RIF1-201ENST00000243326 ASPMQ8IZT6 3477 aa4.08□□□□□ -1.76
RIF1-201ENST00000243326 WDFY3Q8IZQ1 3526 aa4.08□□□□□ -1.76
RIF1-201ENST00000243326 KRTAP10-8P60410 259 aa4.08□□□□□ -1.76
RIF1-201ENST00000243326 EYSQ5T1H1 3165 aa4.07□□□□□ -1.76
RIF1-201ENST00000243326 ZFHX4Q86UP3 3567 aa4.02□□□□□ -1.77
RIF1-201ENST00000243326 ZFHX3Q15911 3703 aa4□□□□□ -1.77
RIF1-201ENST00000243326 P0C880 135 aa3.97□□□□□ -1.77
RIF1-201ENST00000243326 FBN3Q75N90 2809 aa3.94□□□□□ -1.78
RIF1-201ENST00000243326 CSMD1Q96PZ7 3565 aa3.93□□□□□ -1.78
RIF1-201ENST00000243326 TNP1P09430 55 aa3.92□□□□□ -1.78
RIF1-201ENST00000243326 KRTAP1-4P0C5Y4 121 aa3.9□□□□□ -1.78
RIF1-201ENST00000243326 CMYA5Q8N3K9 4069 aa3.9□□□□□ -1.79
RIF1-201ENST00000243326 BSNQ9UPA5 3926 aa3.9□□□□□ -1.79
RIF1-201ENST00000243326 KRTAP12-2P59991 146 aa3.89□□□□□ -1.79
RIF1-201ENST00000243326 XP32Q5T750 250 aa3.89□□□□□ -1.79
RIF1-201ENST00000243326 TPRXLQ17RH7 258 aa3.88□□□□□ -1.79
RIF1-201ENST00000243326 DCHS1Q96JQ0 3298 aa3.88□□□□□ -1.79
RIF1-201ENST00000243326 LOC400499M0QZD8 3231 aa3.86□□□□□ -1.79
RIF1-201ENST00000243326 TRRAPQ9Y4A5 3859 aa3.83□□□□□ -1.8
RIF1-201ENST00000243326 RPS29P62273 56 aaKnown RBP3.83□□□□□ -1.8
RIF1-201ENST00000243326 DNAH3Q8TD57 4116 aa3.81□□□□□ -1.8
RIF1-201ENST00000243326 KRTAP13-3Q3SY46 172 aa3.8□□□□□ -1.8
RIF1-201ENST00000243326 RELNP78509 3460 aa3.79□□□□□ -1.8
RIF1-201ENST00000243326 LYSTQ99698 3801 aa3.77□□□□□ -1.81
RIF1-201ENST00000243326 KRTAP13-4Q3LI77 160 aa3.76□□□□□ -1.81
RIF1-201ENST00000243326 ZNF469Q96JG9 3925 aaPredicted RBP3.75□□□□□ -1.81
RIF1-201ENST00000243326 KRTAP10-10P60014 251 aa3.75□□□□□ -1.81
RIF1-201ENST00000243326 SVEP1Q4LDE5 3571 aa3.74□□□□□ -1.81
RIF1-201ENST00000243326 KRTAP3-1Q9BYR8 98 aa3.74□□□□□ -1.81
RIF1-201ENST00000243326 PP632Q6XCG6 107 aa3.73□□□□□ -1.81
RIF1-201ENST00000243326 ALMS1Q8TCU4 4167 aa3.73□□□□□ -1.81
RIF1-201ENST00000243326 VPS13CQ709C8 3753 aa3.73□□□□□ -1.81
RIF1-201ENST00000243326 DMDP11532 3685 aa3.72□□□□□ -1.81
RIF1-201ENST00000243326 DNAH7Q8WXX0 4024 aa3.71□□□□□ -1.82
RIF1-201ENST00000243326 SMG1Q96Q15 3661 aaKnown RBP3.71□□□□□ -1.82
RIF1-201ENST00000243326 SPENQ96T58 3664 aaKnown RBP3.7□□□□□ -1.82
RIF1-201ENST00000243326 KRTAP12-1P59990 96 aa3.7□□□□□ -1.82
RIF1-201ENST00000243326 LAMA5O15230 3695 aa3.69□□□□□ -1.82
RIF1-201ENST00000243326 HECTD4Q9Y4D8 3996 aa3.64□□□□□ -1.83
RIF1-201ENST00000243326 ANK2Q01484 3957 aa3.61□□□□□ -1.83
RIF1-201ENST00000243326 CUBNO60494 3623 aa3.58□□□□□ -1.84
RIF1-201ENST00000243326 KRTAP10-6P60371 365 aaPredicted RBP3.57□□□□□ -1.84
RIF1-201ENST00000243326 KRTAP15-1Q3LI76 137 aa3.57□□□□□ -1.84
RIF1-201ENST00000243326 DNAH1Q9P2D7 4330 aa3.57□□□□□ -1.84
RIF1-201ENST00000243326 KMT2AQ03164 3969 aa3.56□□□□□ -1.84
RIF1-201ENST00000243326 CRCT1Q9UGL9 99 aa3.54□□□□□ -1.84
RIF1-201ENST00000243326 CSMD2Q7Z408 3487 aa3.52□□□□□ -1.85
RIF1-201ENST00000243326 FLGP20930 4061 aaPredicted RBP3.5□□□□□ -1.85
RIF1-201ENST00000243326 FRAS1Q86XX4 4008 aa3.49□□□□□ -1.85
RIF1-201ENST00000243326 CSMD3Q7Z407 3707 aa3.47□□□□□ -1.85
RIF1-201ENST00000243326 KRTAP3-2Q9BYR7 98 aa3.47□□□□□ -1.85
RIF1-201ENST00000243326 KRTAP3-3Q9BYR6 98 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 170.2 ms