RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 A0A087X002 238 aa12.86□□□□□ -0.35
SMARCD2-201ENST00000225742 NOTCH2NLQ7Z3S9 236 aa12.86□□□□□ -0.35
SMARCD2-201ENST00000225742 FBN3Q75N90 2809 aa12.86□□□□□ -0.35
SMARCD2-201ENST00000225742 C1orf195Q5TG92 126 aa12.85□□□□□ -0.35
SMARCD2-201ENST00000225742 SPINK6Q6UWN8 80 aa12.85□□□□□ -0.35
SMARCD2-201ENST00000225742 BRK1Q8WUW1 75 aa12.83□□□□□ -0.36
SMARCD2-201ENST00000225742 PCOTHQ58A44 107 aa12.82□□□□□ -0.36
SMARCD2-201ENST00000225742 LOC101927531A0A1B0GV80 90 aa12.81□□□□□ -0.36
SMARCD2-201ENST00000225742 KRTAP10-1P60331 282 aa12.8□□□□□ -0.36
SMARCD2-201ENST00000225742 ALMS1Q8TCU4 4167 aa12.79□□□□□ -0.36
SMARCD2-201ENST00000225742 COA5Q86WW8 74 aa12.78□□□□□ -0.36
SMARCD2-201ENST00000225742 LIMD2Q9BT23 127 aa12.77□□□□□ -0.37
SMARCD2-201ENST00000225742 TGP01266 2768 aa12.76□□□□□ -0.37
SMARCD2-201ENST00000225742 KRTAP13-3Q3SY46 172 aa12.75□□□□□ -0.37
SMARCD2-201ENST00000225742 KRTAP13-2Q52LG2 175 aa12.75□□□□□ -0.37
SMARCD2-201ENST00000225742 Q8N9P0 234 aaPredicted RBP12.74□□□□□ -0.37
SMARCD2-201ENST00000225742 PSPHP1O15172 72 aa12.73□□□□□ -0.37
SMARCD2-201ENST00000225742 FRAS1Q86XX4 4008 aa12.71□□□□□ -0.37
SMARCD2-201ENST00000225742 LINC00313P59037 77 aa12.7□□□□□ -0.38
SMARCD2-201ENST00000225742 DNAH5Q8TE73 4624 aa12.69□□□□□ -0.38
SMARCD2-201ENST00000225742 Q5W150 140 aa12.69□□□□□ -0.38
SMARCD2-201ENST00000225742 DNAH11Q96DT5 4516 aa12.69□□□□□ -0.38
SMARCD2-201ENST00000225742 KRTAP21-3Q3LHN1 58 aa12.68□□□□□ -0.38
SMARCD2-201ENST00000225742 A8MUN3 132 aa12.67□□□□□ -0.38
SMARCD2-201ENST00000225742 KRTAP1-4P0C5Y4 121 aa12.65□□□□□ -0.38
SMARCD2-201ENST00000225742 FAM229AH3BQW9 127 aa12.63□□□□□ -0.39
SMARCD2-201ENST00000225742 Q5VV11 94 aa12.63□□□□□ -0.39
SMARCD2-201ENST00000225742 DNHD1Q96M86 4753 aa12.62□□□□□ -0.39
SMARCD2-201ENST00000225742 HRES1P13985 223 aa12.6□□□□□ -0.39
SMARCD2-201ENST00000225742 PRR15LQ9BU68 103 aa12.58□□□□□ -0.4
SMARCD2-201ENST00000225742 PKD1P98161 4303 aa12.56□□□□□ -0.4
SMARCD2-201ENST00000225742 C4orf48Q5BLP8 95 aa12.55□□□□□ -0.4
SMARCD2-201ENST00000225742 LINC01558Q9Y6Z2 57 aa12.55□□□□□ -0.4
SMARCD2-201ENST00000225742 Q75L30 129 aa12.54□□□□□ -0.4
SMARCD2-201ENST00000225742 KRTAP16-1A8MUX0 517 aa12.53□□□□□ -0.4
SMARCD2-201ENST00000225742 PLA2G1BP04054 148 aaKnown RBP12.52□□□□□ -0.41
SMARCD2-201ENST00000225742 SPINK1P00995 79 aa12.51□□□□□ -0.41
SMARCD2-201ENST00000225742 CHKB-CPT1BH3BT56 60 aa12.51□□□□□ -0.41
SMARCD2-201ENST00000225742 TYMSOSQ8TAI1 123 aa12.51□□□□□ -0.41
SMARCD2-201ENST00000225742 ACYP2P14621 99 aa12.5□□□□□ -0.41
SMARCD2-201ENST00000225742 IGKV2-30P06310 120 aa12.49□□□□□ -0.41
SMARCD2-201ENST00000225742 FAT2Q9NYQ8 4349 aa12.46□□□□□ -0.41
SMARCD2-201ENST00000225742 SPAG11AQ6PDA7 123 aa12.45□□□□□ -0.42
SMARCD2-201ENST00000225742 DMAC1Q96GE9 116 aa12.45□□□□□ -0.42
SMARCD2-201ENST00000225742 RPS29P62273 56 aaKnown RBP12.44□□□□□ -0.42
SMARCD2-201ENST00000225742 LRP1BQ9NZR2 4599 aa12.43□□□□□ -0.42
SMARCD2-201ENST00000225742 RETNLBQ9BQ08 111 aa12.37□□□□□ -0.43
SMARCD2-201ENST00000225742 HYDINQ4G0P3 5121 aa12.35□□□□□ -0.43
SMARCD2-201ENST00000225742 LINC00304Q8N9R0 145 aa12.35□□□□□ -0.43
SMARCD2-201ENST00000225742 A6NED7 52 aa12.34□□□□□ -0.43
SMARCD2-201ENST00000225742 PRR26Q8N8Z3 221 aa12.32□□□□□ -0.44
SMARCD2-201ENST00000225742 VPS13BQ7Z7G8 4022 aa12.28□□□□□ -0.44
SMARCD2-201ENST00000225742 CDC42SE1Q9NRR8 79 aa12.27□□□□□ -0.44
SMARCD2-201ENST00000225742 LCA10Q71F78 164 aa12.27□□□□□ -0.45
SMARCD2-201ENST00000225742 ATP11AUNQ6ZP68 121 aa12.25□□□□□ -0.45
SMARCD2-201ENST00000225742 IGKV2D-30A0A075B6S6 120 aa12.24□□□□□ -0.45
SMARCD2-201ENST00000225742 A0A1B0GVY2 172 aa12.23□□□□□ -0.45
SMARCD2-201ENST00000225742 A8MU10 97 aa12.23□□□□□ -0.45
SMARCD2-201ENST00000225742 SACSQ9NZJ4 4579 aa12.23□□□□□ -0.45
SMARCD2-201ENST00000225742 SMR3BP02814 79 aaPredicted RBP12.16□□□□□ -0.46
SMARCD2-201ENST00000225742 PMAIP1Q13794 54 aa12.16□□□□□ -0.46
SMARCD2-201ENST00000225742 C7orf65Q6ZTY9 151 aa12.16□□□□□ -0.46
SMARCD2-201ENST00000225742 SPINK7P58062 85 aa12.15□□□□□ -0.46
SMARCD2-201ENST00000225742 KRTAP10-4P60372 401 aaPredicted RBP12.14□□□□□ -0.47
SMARCD2-201ENST00000225742 SPTSSBQ8NFR3 76 aa12.1□□□□□ -0.47
SMARCD2-201ENST00000225742 A0A1B0GU69 56 aa12.07□□□□□ -0.48
SMARCD2-201ENST00000225742 A8MUU9 505 aa12.07□□□□□ -0.48
SMARCD2-201ENST00000225742 C20orf166-AS1Q96NR2 134 aa12.07□□□□□ -0.48
SMARCD2-201ENST00000225742 DYNC1H1Q14204 4646 aaKnown RBP12.03□□□□□ -0.48
SMARCD2-201ENST00000225742 A6NN06 94 aa11.99□□□□□ -0.49
SMARCD2-201ENST00000225742 PKHD1P08F94 4074 aa11.97□□□□□ -0.49
SMARCD2-201ENST00000225742 C9orf92A6NGG3 77 aa11.94□□□□□ -0.5
SMARCD2-201ENST00000225742 PKHD1L1Q86WI1 4243 aa11.94□□□□□ -0.5
SMARCD2-201ENST00000225742 APOBP04114 4563 aaKnown RBP11.92□□□□□ -0.5
SMARCD2-201ENST00000225742 KTN1-AS1Q86SY8 53 aa11.92□□□□□ -0.5
SMARCD2-201ENST00000225742 Q8N1X5 172 aa11.9□□□□□ -0.5
SMARCD2-201ENST00000225742 SPATA8Q6RVD6 105 aa11.9□□□□□ -0.5
SMARCD2-201ENST00000225742 UQCR11O14957 56 aa11.86□□□□□ -0.51
SMARCD2-201ENST00000225742 MIR22HGQ0VDD5 57 aa11.8□□□□□ -0.52
SMARCD2-201ENST00000225742 SEC61GP60059 68 aa11.79□□□□□ -0.52
SMARCD2-201ENST00000225742 RYR2Q92736 4967 aa11.75□□□□□ -0.53
SMARCD2-201ENST00000225742 KRTAP10-8P60410 259 aa11.73□□□□□ -0.53
SMARCD2-201ENST00000225742 FAT1Q14517 4588 aa11.73□□□□□ -0.53
SMARCD2-201ENST00000225742 KRTAP3-1Q9BYR8 98 aa11.71□□□□□ -0.54
SMARCD2-201ENST00000225742 FLG2Q5D862 2391 aaPredicted RBP11.67□□□□□ -0.54
SMARCD2-201ENST00000225742 COX6B2Q6YFQ2 88 aa11.64□□□□□ -0.55
SMARCD2-201ENST00000225742 Q5VSD8 79 aa11.63□□□□□ -0.55
SMARCD2-201ENST00000225742 RPL37P61927 97 aaKnown RBP11.53□□□□□ -0.56
SMARCD2-201ENST00000225742 RBM12B-AS1Q9P1G2 102 aa11.51□□□□□ -0.57
SMARCD2-201ENST00000225742 FAT3Q8TDW7 4589 aa11.47□□□□□ -0.57
SMARCD2-201ENST00000225742 A0A1B0GU33 70 aa11.46□□□□□ -0.57
SMARCD2-201ENST00000225742 TNXBP22105 4242 aa11.46□□□□□ -0.57
SMARCD2-201ENST00000225742 H1FX-AS1Q4G0G2 97 aa11.44□□□□□ -0.58
SMARCD2-201ENST00000225742 XP32Q5T750 250 aa11.43□□□□□ -0.58
SMARCD2-201ENST00000225742 H0YAA0 97 aa11.4□□□□□ -0.58
SMARCD2-201ENST00000225742 KMT2CQ8NEZ4 4911 aaKnown RBP11.39□□□□□ -0.59
SMARCD2-201ENST00000225742 HSPG2P98160 4391 aa11.35□□□□□ -0.59
SMARCD2-201ENST00000225742 MT1HL1P0DM35 61 aa11.31□□□□□ -0.6
SMARCD2-201ENST00000225742 LRP1Q07954 4544 aaKnown RBP11.29□□□□□ -0.6
SMARCD2-201ENST00000225742 RYR1P21817 5038 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms