RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FLNBO75369 2602 aaKnown RBP2.78□□□□□ -1.96
SCN1A-220ENST00000641603 EP400Q96L91 3159 aa2.78□□□□□ -1.96
SCN1A-220ENST00000641603 MAST4O15021 2626 aa2.78□□□□□ -1.96
SCN1A-220ENST00000641603 M0QZ58 72 aa2.77□□□□□ -1.97
SCN1A-220ENST00000641603 S4R3F8 94 aa2.77□□□□□ -1.97
SCN1A-220ENST00000641603 C20orf166-AS1Q96NR2 134 aa2.76□□□□□ -1.97
SCN1A-220ENST00000641603 STAB1Q9NY15 2570 aa2.76□□□□□ -1.97
SCN1A-220ENST00000641603 HECTD1Q9ULT8 2610 aa2.76□□□□□ -1.97
SCN1A-220ENST00000641603 PP632Q6XCG6 107 aa2.76□□□□□ -1.97
SCN1A-220ENST00000641603 KRTAP11-1Q8IUC1 163 aa2.76□□□□□ -1.97
SCN1A-220ENST00000641603 ITPR3Q14573 2671 aa2.75□□□□□ -1.97
SCN1A-220ENST00000641603 NDUFAF8A1L188 74 aa2.74□□□□□ -1.97
SCN1A-220ENST00000641603 AKAP13Q12802 2813 aa2.74□□□□□ -1.97
SCN1A-220ENST00000641603 A8MUU9 505 aa2.74□□□□□ -1.97
SCN1A-220ENST00000641603 CASC10Q5T4H9 136 aa2.74□□□□□ -1.97
SCN1A-220ENST00000641603 FLNAP21333 2647 aaKnown RBP2.73□□□□□ -1.97
SCN1A-220ENST00000641603 ITPR2Q14571 2701 aa2.73□□□□□ -1.97
SCN1A-220ENST00000641603 DMBT1Q9UGM3 2413 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-220ENST00000641603 MGAM2Q2M2H8 2515 aa2.73□□□□□ -1.97
SCN1A-220ENST00000641603 ADM2Q7Z4H4 148 aa2.72□□□□□ -1.97
SCN1A-220ENST00000641603 KRTAP10-11P60412 298 aa2.72□□□□□ -1.97
SCN1A-220ENST00000641603 R4GN34 69 aa2.71□□□□□ -1.97
SCN1A-220ENST00000641603 PLAC4Q8WY50 150 aa2.71□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP21-3Q3LHN1 58 aa2.7□□□□□ -1.98
SCN1A-220ENST00000641603 C9orf92A6NGG3 77 aa2.7□□□□□ -1.98
SCN1A-220ENST00000641603 K7EIL1 84 aa2.7□□□□□ -1.98
SCN1A-220ENST00000641603 SMR3AQ99954 134 aa2.7□□□□□ -1.98
SCN1A-220ENST00000641603 CENPEQ02224 2701 aa2.7□□□□□ -1.98
SCN1A-220ENST00000641603 A8MU10 97 aa2.69□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP13-1Q8IUC0 172 aa2.69□□□□□ -1.98
SCN1A-220ENST00000641603 J3QL48 77 aa2.69□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP24-1Q3LI83 254 aa2.69□□□□□ -1.98
SCN1A-220ENST00000641603 BAHCC1Q9P281 2608 aa2.69□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP10-3P60369 221 aa2.68□□□□□ -1.98
SCN1A-220ENST00000641603 NBEAL1Q6ZS30 2694 aa2.68□□□□□ -1.98
SCN1A-220ENST00000641603 UNC79Q9P2D8 2635 aa2.68□□□□□ -1.98
SCN1A-220ENST00000641603 GCN1Q92616 2671 aaKnown RBP2.68□□□□□ -1.98
SCN1A-220ENST00000641603 TEX15Q9BXT5 2789 aa2.67□□□□□ -1.98
SCN1A-220ENST00000641603 Q6ZSA8 131 aa2.67□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP1-1Q07627 177 aa2.67□□□□□ -1.98
SCN1A-220ENST00000641603 KRTAP1-3Q8IUG1 177 aa2.66□□□□□ -1.98
SCN1A-220ENST00000641603 P0C880 135 aa2.64□□□□□ -1.99
SCN1A-220ENST00000641603 CENPFP49454 3210 aa2.63□□□□□ -1.99
SCN1A-220ENST00000641603 TEP1Q99973 2627 aaKnown RBP2.63□□□□□ -1.99
SCN1A-220ENST00000641603 CHD6Q8TD26 2715 aa2.63□□□□□ -1.99
SCN1A-220ENST00000641603 NOTCH1P46531 2555 aa2.62□□□□□ -1.99
SCN1A-220ENST00000641603 NSD1Q96L73 2696 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-220ENST00000641603 ZNF292O60281 2723 aa2.61□□□□□ -1.99
SCN1A-220ENST00000641603 SETXQ7Z333 2677 aaKnown RBP2.6□□□□□ -1.99
SCN1A-220ENST00000641603 KRTAP7-1Q8IUC3 87 aa2.6□□□□□ -1.99
SCN1A-220ENST00000641603 MAP1AP78559 2803 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-220ENST00000641603 H0YAA0 97 aa2.59□□□□□ -1.99
SCN1A-220ENST00000641603 KRTAP1-5Q9BYS1 174 aa2.59□□□□□ -1.99
SCN1A-220ENST00000641603 TNP1P09430 55 aa2.59□□□□□ -2
SCN1A-220ENST00000641603 Q6ZRN7 208 aaPredicted RBP2.58□□□□□ -2
SCN1A-220ENST00000641603 KRTAP13-3Q3SY46 172 aa2.58□□□□□ -2
SCN1A-220ENST00000641603 STAB2Q8WWQ8 2551 aa2.58□□□□□ -2
SCN1A-220ENST00000641603 TRANK1O15050 2925 aa2.57□□□□□ -2
SCN1A-220ENST00000641603 COL6A5A8TX70 2615 aa2.57□□□□□ -2
SCN1A-220ENST00000641603 KRTAP13-2Q52LG2 175 aa2.52□□□□□ -2.01
SCN1A-220ENST00000641603 DNAH12Q6ZR08 3092 aa2.52□□□□□ -2.01
SCN1A-220ENST00000641603 UTP20O75691 2785 aaKnown RBP2.52□□□□□ -2.01
SCN1A-220ENST00000641603 INE1O15225 51 aa2.5□□□□□ -2.01
SCN1A-220ENST00000641603 C10orf95Q9H7T3 257 aa2.49□□□□□ -2.01
SCN1A-220ENST00000641603 SMR3BP02814 79 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-220ENST00000641603 IGSF10Q6WRI0 2623 aa2.48□□□□□ -2.01
SCN1A-220ENST00000641603 APCP25054 2843 aa2.47□□□□□ -2.01
SCN1A-220ENST00000641603 KRTAP10-1P60331 282 aa2.46□□□□□ -2.02
SCN1A-220ENST00000641603 CEP350Q5VT06 3117 aa2.46□□□□□ -2.02
SCN1A-220ENST00000641603 FLNCQ14315 2725 aa2.45□□□□□ -2.02
SCN1A-220ENST00000641603 FRYLO94915 3013 aa2.44□□□□□ -2.02
SCN1A-220ENST00000641603 KRTAP15-1Q3LI76 137 aa2.43□□□□□ -2.02
SCN1A-220ENST00000641603 KRTAP10-2P60368 255 aa2.43□□□□□ -2.02
SCN1A-220ENST00000641603 UBR5O95071 2799 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-220ENST00000641603 KRTAP13-4Q3LI77 160 aa2.42□□□□□ -2.02
SCN1A-220ENST00000641603 PRO2289Q9P1D8 64 aa2.42□□□□□ -2.02
SCN1A-220ENST00000641603 M0R2T5 61 aa2.42□□□□□ -2.02
SCN1A-220ENST00000641603 KRTAP1-4P0C5Y4 121 aa2.42□□□□□ -2.02
SCN1A-220ENST00000641603 Q5VSD8 79 aa2.41□□□□□ -2.02
SCN1A-220ENST00000641603 DSPP15924 2871 aaKnown RBP2.41□□□□□ -2.02
SCN1A-220ENST00000641603 TPRXLQ17RH7 258 aa2.4□□□□□ -2.03
SCN1A-220ENST00000641603 A0A0C4DFX4 3053 aa2.39□□□□□ -2.03
SCN1A-220ENST00000641603 C5orf42Q9H799 3197 aa2.39□□□□□ -2.03
SCN1A-220ENST00000641603 LAMA2P24043 3122 aaKnown RBP2.39□□□□□ -2.03
SCN1A-220ENST00000641603 XP32Q5T750 250 aa2.38□□□□□ -2.03
SCN1A-220ENST00000641603 KRTAP23-1A1A580 65 aa2.37□□□□□ -2.03
SCN1A-220ENST00000641603 ITPR1Q14643 2758 aa2.36□□□□□ -2.03
SCN1A-220ENST00000641603 NIPBLQ6KC79 2804 aaeCLIP2.36□□□□□ -2.03
SCN1A-220ENST00000641603 TENM1Q9UKZ4 2725 aa2.36□□□□□ -2.03
SCN1A-220ENST00000641603 MGAQ8IWI9 3026 aa2.36□□□□□ -2.03
SCN1A-220ENST00000641603 WDFY4Q6ZS81 3184 aa2.36□□□□□ -2.03
SCN1A-220ENST00000641603 KRTAP12-1P59990 96 aa2.36□□□□□ -2.03
SCN1A-220ENST00000641603 KRTAP10-8P60410 259 aa2.35□□□□□ -2.03
SCN1A-220ENST00000641603 GOLGB1Q14789 3259 aaKnown RBP2.34□□□□□ -2.03
SCN1A-220ENST00000641603 NBEAQ8NFP9 2946 aa2.34□□□□□ -2.03
SCN1A-220ENST00000641603 VPS13AQ96RL7 3174 aa2.34□□□□□ -2.03
SCN1A-220ENST00000641603 SRCAPQ6ZRS2 3230 aa2.34□□□□□ -2.04
SCN1A-220ENST00000641603 CHD7Q9P2D1 2997 aa2.33□□□□□ -2.04
SCN1A-220ENST00000641603 KRTAP12-2P59991 146 aa2.33□□□□□ -2.04
SCN1A-220ENST00000641603 NF1P21359 2839 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms