RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PLA2G2DQ9UNK4 145 aa3.54□□□□□ -1.84
SCN1A-216ENST00000637968 CSNK1G2-AS1Q8NCQ2 148 aa3.54□□□□□ -1.84
SCN1A-216ENST00000637968 CIRBP-AS1Q8TBR5 109 aa3.54□□□□□ -1.84
SCN1A-216ENST00000637968 VPS13AQ96RL7 3174 aa3.54□□□□□ -1.84
SCN1A-216ENST00000637968 HTTP42858 3142 aa3.53□□□□□ -1.84
SCN1A-216ENST00000637968 USP24Q9UPU5 2620 aa3.53□□□□□ -1.84
SCN1A-216ENST00000637968 EYSQ5T1H1 3165 aa3.53□□□□□ -1.84
SCN1A-216ENST00000637968 BAHCC1Q9P281 2608 aa3.53□□□□□ -1.84
SCN1A-216ENST00000637968 IGLV5-52A0A0A0MRZ9 124 aa3.53□□□□□ -1.84
SCN1A-216ENST00000637968 PRRC2CQ9Y520 2896 aaKnown RBP3.52□□□□□ -1.85
SCN1A-216ENST00000637968 ZFHX3Q15911 3703 aa3.52□□□□□ -1.85
SCN1A-216ENST00000637968 CRIPTQ9P021 101 aa3.52□□□□□ -1.85
SCN1A-216ENST00000637968 WDFY3Q8IZQ1 3526 aa3.52□□□□□ -1.85
SCN1A-216ENST00000637968 ZNF292O60281 2723 aa3.52□□□□□ -1.85
SCN1A-216ENST00000637968 FAM168BA1KXE4 195 aa3.52□□□□□ -1.85
SCN1A-216ENST00000637968 ITPR3Q14573 2671 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 SPRR1AP35321 89 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 CASC10Q5T4H9 136 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 C15orf56Q8N910 161 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 FAM229AH3BQW9 127 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 LINC01556Q5JQF7 62 aa3.51□□□□□ -1.85
SCN1A-216ENST00000637968 GIG44P09565 113 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-216ENST00000637968 FLNAP21333 2647 aaKnown RBP3.5□□□□□ -1.85
SCN1A-216ENST00000637968 KRTAP1-3Q8IUG1 177 aa3.5□□□□□ -1.85
SCN1A-216ENST00000637968 H3BNG1 76 aa3.5□□□□□ -1.85
SCN1A-216ENST00000637968 IGKV2D-30A0A075B6S6 120 aa3.48□□□□□ -1.85
SCN1A-216ENST00000637968 IGKV2-30P06310 120 aa3.48□□□□□ -1.85
SCN1A-216ENST00000637968 K7EIL1 84 aa3.48□□□□□ -1.85
SCN1A-216ENST00000637968 KRTAP1-1Q07627 177 aa3.48□□□□□ -1.85
SCN1A-216ENST00000637968 P0C880 135 aa3.47□□□□□ -1.85
SCN1A-216ENST00000637968 TEP1Q99973 2627 aaKnown RBP3.47□□□□□ -1.85
SCN1A-216ENST00000637968 TRIOO75962 3097 aa3.47□□□□□ -1.85
SCN1A-216ENST00000637968 CENPEQ02224 2701 aa3.47□□□□□ -1.85
SCN1A-216ENST00000637968 KRTAP4-16G5E9R7 235 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-216ENST00000637968 FREM2Q5SZK8 3169 aa3.47□□□□□ -1.85
SCN1A-216ENST00000637968 A0A1B0GU33 70 aa3.46□□□□□ -1.86
SCN1A-216ENST00000637968 KRTAP26-1Q6PEX3 210 aa3.46□□□□□ -1.86
SCN1A-216ENST00000637968 LINC00304Q8N9R0 145 aa3.46□□□□□ -1.86
SCN1A-216ENST00000637968 J3QL48 77 aa3.45□□□□□ -1.86
SCN1A-216ENST00000637968 SPTBN5Q9NRC6 3674 aaKnown RBP3.45□□□□□ -1.86
SCN1A-216ENST00000637968 NBDYA0A0U1RRE5 68 aa3.45□□□□□ -1.86
SCN1A-216ENST00000637968 FRYQ5TBA9 3013 aa3.45□□□□□ -1.86
SCN1A-216ENST00000637968 CHD7Q9P2D1 2997 aa3.44□□□□□ -1.86
SCN1A-216ENST00000637968 STAB1Q9NY15 2570 aa3.44□□□□□ -1.86
SCN1A-216ENST00000637968 CHD9Q3L8U1 2897 aa3.44□□□□□ -1.86
SCN1A-216ENST00000637968 Q5W150 140 aa3.43□□□□□ -1.86
SCN1A-216ENST00000637968 REV3LO60673 3130 aa3.43□□□□□ -1.86
SCN1A-216ENST00000637968 UNC79Q9P2D8 2635 aa3.43□□□□□ -1.86
SCN1A-216ENST00000637968 KRTAP11-1Q8IUC1 163 aa3.43□□□□□ -1.86
SCN1A-216ENST00000637968 CHD6Q8TD26 2715 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 PRUNE2Q8WUY3 3088 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 KRTAP10-11P60412 298 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 ZZEF1O43149 2961 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 PSORS1C2Q9UIG4 136 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 SPRR1BP22528 89 aa3.42□□□□□ -1.86
SCN1A-216ENST00000637968 COL6A5A8TX70 2615 aa3.41□□□□□ -1.86
SCN1A-216ENST00000637968 KRTAP10-3P60369 221 aa3.41□□□□□ -1.86
SCN1A-216ENST00000637968 SPACA4Q8TDM5 124 aa3.41□□□□□ -1.86
SCN1A-216ENST00000637968 PANO1I0J062 215 aa3.41□□□□□ -1.86
SCN1A-216ENST00000637968 WDFY4Q6ZS81 3184 aa3.4□□□□□ -1.86
SCN1A-216ENST00000637968 FLG2Q5D862 2391 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-216ENST00000637968 LAMA1P25391 3075 aa3.4□□□□□ -1.87
SCN1A-216ENST00000637968 FRYLO94915 3013 aa3.39□□□□□ -1.87
SCN1A-216ENST00000637968 IGSF10Q6WRI0 2623 aa3.39□□□□□ -1.87
SCN1A-216ENST00000637968 TRANK1O15050 2925 aa3.38□□□□□ -1.87
SCN1A-216ENST00000637968 GCN1Q92616 2671 aaKnown RBP3.38□□□□□ -1.87
SCN1A-216ENST00000637968 DSPP15924 2871 aaKnown RBP3.38□□□□□ -1.87
SCN1A-216ENST00000637968 H1FX-AS1Q4G0G2 97 aa3.37□□□□□ -1.87
SCN1A-216ENST00000637968 Q96NJ1 140 aa3.37□□□□□ -1.87
SCN1A-216ENST00000637968 A0A087WTM6 91 aa3.37□□□□□ -1.87
SCN1A-216ENST00000637968 ITPR1Q14643 2758 aa3.37□□□□□ -1.87
SCN1A-216ENST00000637968 KRTAP21-3Q3LHN1 58 aa3.36□□□□□ -1.87
SCN1A-216ENST00000637968 CELSR3Q9NYQ7 3312 aa3.36□□□□□ -1.87
SCN1A-216ENST00000637968 TNRC18O15417 2968 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-216ENST00000637968 TEX15Q9BXT5 2789 aa3.35□□□□□ -1.87
SCN1A-216ENST00000637968 Q8N1X5 172 aa3.35□□□□□ -1.87
SCN1A-216ENST00000637968 DMDP11532 3685 aa3.35□□□□□ -1.87
SCN1A-216ENST00000637968 KALRNO60229 2985 aa3.35□□□□□ -1.87
SCN1A-216ENST00000637968 CAMK2N1Q7Z7J9 78 aa3.34□□□□□ -1.87
SCN1A-216ENST00000637968 APLNQ9ULZ1 77 aa3.34□□□□□ -1.87
SCN1A-216ENST00000637968 RPL37P61927 97 aaKnown RBP3.34□□□□□ -1.88
SCN1A-216ENST00000637968 COX6B2Q6YFQ2 88 aa3.34□□□□□ -1.88
SCN1A-216ENST00000637968 AKAP13Q12802 2813 aa3.33□□□□□ -1.88
SCN1A-216ENST00000637968 H0YAA0 97 aa3.33□□□□□ -1.88
SCN1A-216ENST00000637968 Q6ZSA8 131 aa3.33□□□□□ -1.88
SCN1A-216ENST00000637968 TYMSOSQ8TAI1 123 aa3.32□□□□□ -1.88
SCN1A-216ENST00000637968 ASPMQ8IZT6 3477 aa3.31□□□□□ -1.88
SCN1A-216ENST00000637968 CFAP47Q6ZTR5 3102 aa3.31□□□□□ -1.88
SCN1A-216ENST00000637968 A0A0D9SG42 100 aa3.31□□□□□ -1.88
SCN1A-216ENST00000637968 MUC3AQ02505 3323 aa3.31□□□□□ -1.88
SCN1A-216ENST00000637968 NOTCH1P46531 2555 aa3.3□□□□□ -1.88
SCN1A-216ENST00000637968 ANAPC11Q9NYG5 84 aa3.29□□□□□ -1.88
SCN1A-216ENST00000637968 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-216ENST00000637968 TACC2O95359 2948 aa3.29□□□□□ -1.88
SCN1A-216ENST00000637968 KRTAP15-1Q3LI76 137 aa3.29□□□□□ -1.88
SCN1A-216ENST00000637968 KRTAP7-1Q8IUC3 87 aa3.29□□□□□ -1.88
SCN1A-216ENST00000637968 NBEAL1Q6ZS30 2694 aa3.28□□□□□ -1.88
SCN1A-216ENST00000637968 LOC400499M0QZD8 3231 aa3.28□□□□□ -1.88
SCN1A-216ENST00000637968 MAP1AP78559 2803 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-216ENST00000637968 LCE2DQ5TA82 110 aaPredicted RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms