RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 C20orf202A1L168 122 aa9.31□□□□□ -0.92
CIITA-215ENST00000637439 Q75L30 129 aa9.31□□□□□ -0.92
CIITA-215ENST00000637439 TRBV7-7A0A0K0K1E9 115 aa9.3□□□□□ -0.92
CIITA-215ENST00000637439 ANKRD39Q53RE8 183 aa9.3□□□□□ -0.92
CIITA-215ENST00000637439 CLEC2BQ92478 149 aa9.3□□□□□ -0.92
CIITA-215ENST00000637439 OBSCN-AS1Q96MR7 158 aa9.29□□□□□ -0.92
CIITA-215ENST00000637439 LINC00575Q6W349 94 aa9.28□□□□□ -0.92
CIITA-215ENST00000637439 SLC7A5P1Q8MH63 180 aa9.28□□□□□ -0.92
CIITA-215ENST00000637439 IGFL1Q6UW32 110 aa9.26□□□□□ -0.93
CIITA-215ENST00000637439 Q6ZQY7 126 aa9.26□□□□□ -0.93
CIITA-215ENST00000637439 hADV29S1A0JD25 119 aa9.25□□□□□ -0.93
CIITA-215ENST00000637439 CFC1P0CG37 223 aa9.25□□□□□ -0.93
CIITA-215ENST00000637439 OCIAD2Q56VL3 154 aa9.25□□□□□ -0.93
CIITA-215ENST00000637439 COA6Q5JTJ3 125 aaKnown RBP9.24□□□□□ -0.93
CIITA-215ENST00000637439 ATOH7Q8N100 152 aa9.23□□□□□ -0.93
CIITA-215ENST00000637439 LST1O00453 97 aa9.21□□□□□ -0.94
CIITA-215ENST00000637439 SNRPEP62304 92 aaKnown RBP9.21□□□□□ -0.94
CIITA-215ENST00000637439 PPDPFLQ8WWR9 84 aa9.2□□□□□ -0.94
CIITA-215ENST00000637439 Q96NJ1 140 aa9.2□□□□□ -0.94
CIITA-215ENST00000637439 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.19□□□□□ -0.94
CIITA-215ENST00000637439 KRTAP9-7A8MTY7 169 aa9.18□□□□□ -0.94
CIITA-215ENST00000637439 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.18□□□□□ -0.94
CIITA-215ENST00000637439 SCGB1D1O95968 90 aa9.18□□□□□ -0.94
CIITA-215ENST00000637439 SNHG12Q9BXW3 62 aa9.17□□□□□ -0.94
CIITA-215ENST00000637439 TRBV20-1A0A075B6N2 111 aa9.16□□□□□ -0.94
CIITA-215ENST00000637439 SS18L2Q9UHA2 77 aa9.16□□□□□ -0.94
CIITA-215ENST00000637439 USH2AO75445 5202 aa9.16□□□□□ -0.94
CIITA-215ENST00000637439 C20orf166-AS1Q96NR2 134 aa9.15□□□□□ -0.94
CIITA-215ENST00000637439 KRTAP9-8Q9BYQ0 159 aa9.15□□□□□ -0.94
CIITA-215ENST00000637439 BVES-AS1Q5T3Y7 98 aa9.14□□□□□ -0.95
CIITA-215ENST00000637439 SSPOA2VEC9 5147 aa9.13□□□□□ -0.95
CIITA-215ENST00000637439 A8MUU9 505 aa9.11□□□□□ -0.95
CIITA-215ENST00000637439 H3BUT2 72 aa9.11□□□□□ -0.95
CIITA-215ENST00000637439 HSBP1L1C9JCN9 74 aa9.08□□□□□ -0.96
CIITA-215ENST00000637439 TEN1Q86WV5 123 aa9.07□□□□□ -0.96
CIITA-215ENST00000637439 C12orf57Q99622 126 aa9.07□□□□□ -0.96
CIITA-215ENST00000637439 SNCGO76070 127 aa9.06□□□□□ -0.96
CIITA-215ENST00000637439 HIST1H4GQ99525 98 aa9.02□□□□□ -0.97
CIITA-215ENST00000637439 A0A087WSZ3 146 aa9.01□□□□□ -0.97
CIITA-215ENST00000637439 FAM236DA0A1B0GTK5 79 aa9□□□□□ -0.97
CIITA-215ENST00000637439 FAM236CP0DP71 79 aa9□□□□□ -0.97
CIITA-215ENST00000637439 NDUFV3P56181 108 aaKnown RBP9□□□□□ -0.97
CIITA-215ENST00000637439 FCGBPQ9Y6R7 5405 aaPredicted RBP9□□□□□ -0.97
CIITA-215ENST00000637439 MT2AP02795 61 aa8.99□□□□□ -0.97
CIITA-215ENST00000637439 H0YGX0 51 aa8.98□□□□□ -0.97
CIITA-215ENST00000637439 DSCR10P59022 87 aa8.98□□□□□ -0.97
CIITA-215ENST00000637439 GHRHP01286 108 aa8.97□□□□□ -0.97
CIITA-215ENST00000637439 S100A2P29034 98 aa8.97□□□□□ -0.97
CIITA-215ENST00000637439 HIST1H2BLQ99880 126 aa8.96□□□□□ -0.98
CIITA-215ENST00000637439 H3BMG7 143 aa8.95□□□□□ -0.98
CIITA-215ENST00000637439 HIST3H2BBQ8N257 126 aa8.95□□□□□ -0.98
CIITA-215ENST00000637439 SIGMAR1Q99720 223 aa8.95□□□□□ -0.98
CIITA-215ENST00000637439 RBM12B-AS1Q9P1G2 102 aa8.95□□□□□ -0.98
CIITA-215ENST00000637439 LINC00313P59037 77 aa8.94□□□□□ -0.98
CIITA-215ENST00000637439 RAB37Q96AX2 223 aa8.94□□□□□ -0.98
CIITA-215ENST00000637439 KRTAP16-1A8MUX0 517 aa8.92□□□□□ -0.98
CIITA-215ENST00000637439 KRTAP19-1Q8IUB9 90 aa8.91□□□□□ -0.98
CIITA-215ENST00000637439 FAM218AQ96MZ4 157 aa8.91□□□□□ -0.98
CIITA-215ENST00000637439 A0A1B0GX51 115 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 LCE2BO14633 110 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 MT1FP04733 61 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 COX8AP10176 69 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 KRTAP10-10P60014 251 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 MPLKIPQ8TAP9 179 aa8.9□□□□□ -0.98
CIITA-215ENST00000637439 FABP2P12104 132 aa8.89□□□□□ -0.99
CIITA-215ENST00000637439 A0A0B4J2C4 111 aa8.88□□□□□ -0.99
CIITA-215ENST00000637439 DLEU1O43261 78 aa8.88□□□□□ -0.99
CIITA-215ENST00000637439 IGKV4-1P06312 121 aa8.88□□□□□ -0.99
CIITA-215ENST00000637439 HRES1P13985 223 aa8.88□□□□□ -0.99
CIITA-215ENST00000637439 KRTAP9-3Q9BYQ3 159 aa8.88□□□□□ -0.99
CIITA-215ENST00000637439 A0A1W2PNM2 257 aa8.87□□□□□ -0.99
CIITA-215ENST00000637439 TRBV7-4A0A0J9YYF1 115 aa8.84□□□□□ -0.99
CIITA-215ENST00000637439 S100A6P06703 90 aa8.82□□□□□ -1
CIITA-215ENST00000637439 NOTCH2NLQ7Z3S9 236 aa8.82□□□□□ -1
CIITA-215ENST00000637439 MTURNQ8N3F0 131 aa8.82□□□□□ -1
CIITA-215ENST00000637439 ANKRD29Q8N6D5 301 aa8.82□□□□□ -1
CIITA-215ENST00000637439 HIGD1BQ9P298 99 aa8.82□□□□□ -1
CIITA-215ENST00000637439 LINC00846Q9NV44 126 aa8.81□□□□□ -1
CIITA-215ENST00000637439 MACF1Q9UPN3 7388 aaKnown RBP8.8□□□□□ -1
CIITA-215ENST00000637439 PRO1854Q9UHT4 67 aa8.79□□□□□ -1
CIITA-215ENST00000637439 IGHV6-1A0A0B4J1U7 121 aa8.78□□□□□ -1
CIITA-215ENST00000637439 H3BQ85 93 aa8.78□□□□□ -1
CIITA-215ENST00000637439 C14orf144Q96I85 54 aa8.77□□□□□ -1.01
CIITA-215ENST00000637439 LINC00472Q9H8W2 130 aa8.77□□□□□ -1.01
CIITA-215ENST00000637439 TMEM238LA0A1B0GVL6 79 aa8.76□□□□□ -1.01
CIITA-215ENST00000637439 A6NJY4 79 aa8.76□□□□□ -1.01
CIITA-215ENST00000637439 DEFB116Q30KQ4 102 aa8.76□□□□□ -1.01
CIITA-215ENST00000637439 DNAL4O96015 105 aa8.75□□□□□ -1.01
CIITA-215ENST00000637439 ORMDL1Q9P0S3 153 aa8.75□□□□□ -1.01
CIITA-215ENST00000637439 SYNE2Q8WXH0 6885 aaKnown RBP8.75□□□□□ -1.01
CIITA-215ENST00000637439 TRACP01848 142 aa8.74□□□□□ -1.01
CIITA-215ENST00000637439 CEND1Q8N111 149 aa8.74□□□□□ -1.01
CIITA-215ENST00000637439 C8orf87E5RJ46 101 aa8.73□□□□□ -1.01
CIITA-215ENST00000637439 TRIAP1O43715 76 aa8.73□□□□□ -1.01
CIITA-215ENST00000637439 CCKP06307 115 aa8.73□□□□□ -1.01
CIITA-215ENST00000637439 TMEM256-PLSCR3K7ERE1 68 aa8.72□□□□□ -1.01
CIITA-215ENST00000637439 A0A1B0GV72 72 aa8.71□□□□□ -1.02
CIITA-215ENST00000637439 SPATA45Q537H7 98 aa8.71□□□□□ -1.02
CIITA-215ENST00000637439 C2orf91Q6ZV80 131 aa8.71□□□□□ -1.02
CIITA-215ENST00000637439 PAM16Q9Y3D7 125 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms