RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SPRR4Q96PI1 79 aa13.63□□□□□ -0.23
PNKP-220ENST00000627232 NREPQ16612 68 aa13.62□□□□□ -0.23
PNKP-220ENST00000627232 DNAH17Q9UFH2 4485 aa13.58□□□□□ -0.24
PNKP-220ENST00000627232 CCDC179H3BU77 68 aa13.56□□□□□ -0.24
PNKP-220ENST00000627232 CRYGAP11844 174 aa13.56□□□□□ -0.24
PNKP-220ENST00000627232 IGFL1Q6UW32 110 aa13.56□□□□□ -0.24
PNKP-220ENST00000627232 ALMS1Q8TCU4 4167 aa13.56□□□□□ -0.24
PNKP-220ENST00000627232 KMT2AQ03164 3969 aa13.52□□□□□ -0.24
PNKP-220ENST00000627232 SCXQ7RTU7 201 aa13.52□□□□□ -0.25
PNKP-220ENST00000627232 PSORS1C2Q9UIG4 136 aa13.52□□□□□ -0.25
PNKP-220ENST00000627232 DNAH2Q9P225 4427 aa13.51□□□□□ -0.25
PNKP-220ENST00000627232 BPY2O14599 106 aa13.5□□□□□ -0.25
PNKP-220ENST00000627232 UQCRQO14949 82 aa13.5□□□□□ -0.25
PNKP-220ENST00000627232 COX7CP15954 63 aa13.49□□□□□ -0.25
PNKP-220ENST00000627232 KRTAP10-2P60368 255 aa13.48□□□□□ -0.25
PNKP-220ENST00000627232 SERP2Q8N6R1 65 aa13.47□□□□□ -0.25
PNKP-220ENST00000627232 ZNF706Q9Y5V0 76 aaPredicted RBP13.47□□□□□ -0.25
PNKP-220ENST00000627232 LINC00483Q53H64 154 aa13.45□□□□□ -0.26
PNKP-220ENST00000627232 ZNF861PO60384 105 aa13.44□□□□□ -0.26
PNKP-220ENST00000627232 HECTD4Q9Y4D8 3996 aa13.44□□□□□ -0.26
PNKP-220ENST00000627232 A0A0G2JQZ4 141 aa13.44□□□□□ -0.26
PNKP-220ENST00000627232 IGKV4-1P06312 121 aa13.44□□□□□ -0.26
PNKP-220ENST00000627232 TGP01266 2768 aa13.43□□□□□ -0.26
PNKP-220ENST00000627232 SMIM20Q8N5G0 67 aa13.39□□□□□ -0.27
PNKP-220ENST00000627232 RPL37AP61513 92 aaKnown RBP13.39□□□□□ -0.27
PNKP-220ENST00000627232 C9orf153Q5TBE3 101 aa13.38□□□□□ -0.27
PNKP-220ENST00000627232 FAM30AQ9NZY2 134 aa13.38□□□□□ -0.27
PNKP-220ENST00000627232 A0A087WSZ3 146 aa13.37□□□□□ -0.27
PNKP-220ENST00000627232 Q6ZSA8 131 aa13.37□□□□□ -0.27
PNKP-220ENST00000627232 Q8N9L7 120 aa13.37□□□□□ -0.27
PNKP-220ENST00000627232 CIRBP-AS1Q8TBR5 109 aa13.37□□□□□ -0.27
PNKP-220ENST00000627232 IGLV7-43P04211 117 aa13.36□□□□□ -0.27
PNKP-220ENST00000627232 TRAV7A0A075B6U4 112 aa13.34□□□□□ -0.27
PNKP-220ENST00000627232 DSCR10P59022 87 aa13.33□□□□□ -0.28
PNKP-220ENST00000627232 KRTAP10-1P60331 282 aa13.33□□□□□ -0.28
PNKP-220ENST00000627232 FRAS1Q86XX4 4008 aa13.3□□□□□ -0.28
PNKP-220ENST00000627232 IGLV9-49A0A0B4J1Y8 123 aa13.29□□□□□ -0.28
PNKP-220ENST00000627232 LCE6AA0A183 80 aa13.23□□□□□ -0.29
PNKP-220ENST00000627232 K7EQZ3 153 aa13.23□□□□□ -0.29
PNKP-220ENST00000627232 DNAH8Q96JB1 4490 aa13.23□□□□□ -0.29
PNKP-220ENST00000627232 DNAH11Q96DT5 4516 aa13.23□□□□□ -0.29
PNKP-220ENST00000627232 LINC00472Q9H8W2 130 aa13.22□□□□□ -0.29
PNKP-220ENST00000627232 MOBPQ13875 183 aa13.2□□□□□ -0.3
PNKP-220ENST00000627232 LINC00336Q6ZUF6 198 aa13.2□□□□□ -0.3
PNKP-220ENST00000627232 SRRM2Q9UQ35 2752 aaKnown RBP13.19□□□□□ -0.3
PNKP-220ENST00000627232 DEFB116Q30KQ4 102 aa13.18□□□□□ -0.3
PNKP-220ENST00000627232 DNAH5Q8TE73 4624 aa13.18□□□□□ -0.3
PNKP-220ENST00000627232 ANAPC11Q9NYG5 84 aa13.18□□□□□ -0.3
PNKP-220ENST00000627232 OCR1Q9BZK8 76 aa13.17□□□□□ -0.3
PNKP-220ENST00000627232 SS18L2Q9UHA2 77 aa13.17□□□□□ -0.3
PNKP-220ENST00000627232 J3KT08 172 aa13.16□□□□□ -0.3
PNKP-220ENST00000627232 HCG22E2RYF7 251 aa13.14□□□□□ -0.31
PNKP-220ENST00000627232 C20orf197Q8N268 126 aa13.13□□□□□ -0.31
PNKP-220ENST00000627232 PKD1P98161 4303 aa13.13□□□□□ -0.31
PNKP-220ENST00000627232 A8MWP4 228 aa13.13□□□□□ -0.31
PNKP-220ENST00000627232 CYSTM1Q9H1C7 97 aa13.13□□□□□ -0.31
PNKP-220ENST00000627232 FAT2Q9NYQ8 4349 aa13.12□□□□□ -0.31
PNKP-220ENST00000627232 HYDINQ4G0P3 5121 aa13.11□□□□□ -0.31
PNKP-220ENST00000627232 PRR15Q8IV56 129 aa13.11□□□□□ -0.31
PNKP-220ENST00000627232 KLKP1Q107X0 134 aa13.09□□□□□ -0.31
PNKP-220ENST00000627232 SSBP3-AS1Q7Z2R9 100 aa13.09□□□□□ -0.31
PNKP-220ENST00000627232 HRCT1Q6UXD1 115 aa13.08□□□□□ -0.31
PNKP-220ENST00000627232 Q96NJ1 140 aa13.08□□□□□ -0.31
PNKP-220ENST00000627232 CD164Q04900 197 aa13.08□□□□□ -0.32
PNKP-220ENST00000627232 TMEM258P61165 79 aa13.06□□□□□ -0.32
PNKP-220ENST00000627232 FAM229BQ4G0N7 80 aa13.05□□□□□ -0.32
PNKP-220ENST00000627232 NDUFB1O75438 58 aa13.03□□□□□ -0.32
PNKP-220ENST00000627232 KRTAP29-1A8MX34 341 aaPredicted RBP13.03□□□□□ -0.32
PNKP-220ENST00000627232 A0A1B0GVY2 172 aa13.02□□□□□ -0.33
PNKP-220ENST00000627232 TMEM254Q8TBM7 123 aa13.01□□□□□ -0.33
PNKP-220ENST00000627232 WFDC13Q8IUB5 93 aa13□□□□□ -0.33
PNKP-220ENST00000627232 SACSQ9NZJ4 4579 aa12.99□□□□□ -0.33
PNKP-220ENST00000627232 CASC2Q6XLA1 102 aa12.98□□□□□ -0.33
PNKP-220ENST00000627232 SNURFQ9Y675 71 aa12.98□□□□□ -0.33
PNKP-220ENST00000627232 NDUFC1O43677 76 aa12.98□□□□□ -0.33
PNKP-220ENST00000627232 A0A0U1RQV1 116 aa12.96□□□□□ -0.33
PNKP-220ENST00000627232 H7BZZ5 65 aa12.95□□□□□ -0.34
PNKP-220ENST00000627232 A0A087X002 238 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 MMP24-AS1A0A0U1RRL7 71 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 KRTAP1-4P0C5Y4 121 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 KRTAP13-2Q52LG2 175 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 ASB16-AS1Q495Z4 193 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 C5orf47Q569G3 176 aa12.93□□□□□ -0.34
PNKP-220ENST00000627232 CDK2AP2O75956 126 aa12.91□□□□□ -0.34
PNKP-220ENST00000627232 A0A1B0GVX0 72 aa12.89□□□□□ -0.35
PNKP-220ENST00000627232 SPINK6Q6UWN8 80 aa12.88□□□□□ -0.35
PNKP-220ENST00000627232 hDV103S1A0JD37 113 aa12.87□□□□□ -0.35
PNKP-220ENST00000627232 C8orf17Q9NRJ1 99 aa12.87□□□□□ -0.35
PNKP-220ENST00000627232 LRP1BQ9NZR2 4599 aa12.86□□□□□ -0.35
PNKP-220ENST00000627232 Q5XG85 94 aa12.86□□□□□ -0.35
PNKP-220ENST00000627232 FAM236DA0A1B0GTK5 79 aa12.83□□□□□ -0.35
PNKP-220ENST00000627232 FAM236CP0DP71 79 aa12.83□□□□□ -0.35
PNKP-220ENST00000627232 IGHV6-1A0A0B4J1U7 121 aa12.82□□□□□ -0.36
PNKP-220ENST00000627232 RPS28P62857 69 aaKnown RBP12.82□□□□□ -0.36
PNKP-220ENST00000627232 ZCCHC13Q8WW36 166 aaKnown RBP12.82□□□□□ -0.36
PNKP-220ENST00000627232 PLA2G1BP04054 148 aaKnown RBP12.81□□□□□ -0.36
PNKP-220ENST00000627232 MP68P56378 58 aa12.78□□□□□ -0.36
PNKP-220ENST00000627232 ATP5EP56381 51 aaPredicted RBP12.78□□□□□ -0.36
PNKP-220ENST00000627232 H3BPC8 53 aa12.76□□□□□ -0.37
PNKP-220ENST00000627232 LIMD2Q9BT23 127 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms