RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 TRBV7-7A0A0K0K1E9 115 aa12.37□□□□□ -0.43
CPSF1-214ENST00000622776 Q6JHZ5 121 aa12.37□□□□□ -0.43
CPSF1-214ENST00000622776 ATP11AUNQ6ZP68 121 aa12.37□□□□□ -0.43
CPSF1-214ENST00000622776 VAMP3Q15836 100 aa12.36□□□□□ -0.43
CPSF1-214ENST00000622776 LINC00575Q6W349 94 aa12.36□□□□□ -0.43
CPSF1-214ENST00000622776 ATOH7Q8N100 152 aa12.36□□□□□ -0.43
CPSF1-214ENST00000622776 OBSCN-AS1Q96MR7 158 aa12.36□□□□□ -0.43
CPSF1-214ENST00000622776 Q75L30 129 aa12.35□□□□□ -0.43
CPSF1-214ENST00000622776 CLEC2BQ92478 149 aa12.35□□□□□ -0.43
CPSF1-214ENST00000622776 COA6Q5JTJ3 125 aaKnown RBP12.34□□□□□ -0.43
CPSF1-214ENST00000622776 IGFL1Q6UW32 110 aa12.34□□□□□ -0.43
CPSF1-214ENST00000622776 Q6ZQY7 126 aa12.33□□□□□ -0.44
CPSF1-214ENST00000622776 hADV29S1A0JD25 119 aa12.31□□□□□ -0.44
CPSF1-214ENST00000622776 OCIAD2Q56VL3 154 aa12.31□□□□□ -0.44
CPSF1-214ENST00000622776 LST1O00453 97 aa12.22□□□□□ -0.45
CPSF1-214ENST00000622776 SNRPEP62304 92 aaKnown RBP12.22□□□□□ -0.45
CPSF1-214ENST00000622776 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.22□□□□□ -0.45
CPSF1-214ENST00000622776 Q96NJ1 140 aa12.22□□□□□ -0.45
CPSF1-214ENST00000622776 CFC1P0CG37 223 aa12.2□□□□□ -0.46
CPSF1-214ENST00000622776 SNHG12Q9BXW3 62 aa12.19□□□□□ -0.46
CPSF1-214ENST00000622776 KRTAP9-8Q9BYQ0 159 aa12.19□□□□□ -0.46
CPSF1-214ENST00000622776 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.18□□□□□ -0.46
CPSF1-214ENST00000622776 PPDPFLQ8WWR9 84 aa12.18□□□□□ -0.46
CPSF1-214ENST00000622776 H3BUT2 72 aa12.17□□□□□ -0.46
CPSF1-214ENST00000622776 KRTAP9-7A8MTY7 169 aa12.16□□□□□ -0.46
CPSF1-214ENST00000622776 C20orf166-AS1Q96NR2 134 aa12.15□□□□□ -0.46
CPSF1-214ENST00000622776 USH2AO75445 5202 aa12.15□□□□□ -0.46
CPSF1-214ENST00000622776 SSPOA2VEC9 5147 aa12.15□□□□□ -0.47
CPSF1-214ENST00000622776 SCGB1D1O95968 90 aa12.14□□□□□ -0.47
CPSF1-214ENST00000622776 A8MUU9 505 aa12.12□□□□□ -0.47
CPSF1-214ENST00000622776 BVES-AS1Q5T3Y7 98 aa12.12□□□□□ -0.47
CPSF1-214ENST00000622776 SS18L2Q9UHA2 77 aa12.12□□□□□ -0.47
CPSF1-214ENST00000622776 TRBV20-1A0A075B6N2 111 aa12.1□□□□□ -0.47
CPSF1-214ENST00000622776 C12orf57Q99622 126 aa12.09□□□□□ -0.47
CPSF1-214ENST00000622776 HSBP1L1C9JCN9 74 aa12.07□□□□□ -0.48
CPSF1-214ENST00000622776 TEN1Q86WV5 123 aa12.04□□□□□ -0.48
CPSF1-214ENST00000622776 HIST1H4GQ99525 98 aa12.01□□□□□ -0.49
CPSF1-214ENST00000622776 A0A087WSZ3 146 aa12□□□□□ -0.49
CPSF1-214ENST00000622776 HIST1H2BLQ99880 126 aa11.99□□□□□ -0.49
CPSF1-214ENST00000622776 NDUFV3P56181 108 aaKnown RBP11.98□□□□□ -0.49
CPSF1-214ENST00000622776 DSCR10P59022 87 aa11.98□□□□□ -0.49
CPSF1-214ENST00000622776 HIST3H2BBQ8N257 126 aa11.98□□□□□ -0.49
CPSF1-214ENST00000622776 MT2AP02795 61 aa11.97□□□□□ -0.49
CPSF1-214ENST00000622776 SNCGO76070 127 aa11.95□□□□□ -0.5
CPSF1-214ENST00000622776 S100A2P29034 98 aa11.95□□□□□ -0.5
CPSF1-214ENST00000622776 FCGBPQ9Y6R7 5405 aaPredicted RBP11.94□□□□□ -0.5
CPSF1-214ENST00000622776 KRTAP16-1A8MUX0 517 aa11.93□□□□□ -0.5
CPSF1-214ENST00000622776 FAM236DA0A1B0GTK5 79 aa11.92□□□□□ -0.5
CPSF1-214ENST00000622776 H0YGX0 51 aa11.92□□□□□ -0.5
CPSF1-214ENST00000622776 FAM236CP0DP71 79 aa11.92□□□□□ -0.5
CPSF1-214ENST00000622776 FAM218AQ96MZ4 157 aa11.92□□□□□ -0.5
CPSF1-214ENST00000622776 H3BMG7 143 aa11.9□□□□□ -0.5
CPSF1-214ENST00000622776 SIGMAR1Q99720 223 aa11.9□□□□□ -0.5
CPSF1-214ENST00000622776 COX8AP10176 69 aa11.88□□□□□ -0.51
CPSF1-214ENST00000622776 RAB37Q96AX2 223 aa11.88□□□□□ -0.51
CPSF1-214ENST00000622776 LCE2BO14633 110 aa11.87□□□□□ -0.51
CPSF1-214ENST00000622776 MT1FP04733 61 aa11.87□□□□□ -0.51
CPSF1-214ENST00000622776 LINC00313P59037 77 aa11.87□□□□□ -0.51
CPSF1-214ENST00000622776 A0A1W2PNM2 257 aa11.85□□□□□ -0.51
CPSF1-214ENST00000622776 KRTAP19-1Q8IUB9 90 aa11.85□□□□□ -0.51
CPSF1-214ENST00000622776 FABP2P12104 132 aa11.84□□□□□ -0.51
CPSF1-214ENST00000622776 MPLKIPQ8TAP9 179 aa11.84□□□□□ -0.51
CPSF1-214ENST00000622776 KRTAP9-3Q9BYQ3 159 aa11.83□□□□□ -0.52
CPSF1-214ENST00000622776 RBM12B-AS1Q9P1G2 102 aa11.83□□□□□ -0.52
CPSF1-214ENST00000622776 A0A0B4J2C4 111 aa11.82□□□□□ -0.52
CPSF1-214ENST00000622776 DLEU1O43261 78 aa11.82□□□□□ -0.52
CPSF1-214ENST00000622776 GHRHP01286 108 aa11.82□□□□□ -0.52
CPSF1-214ENST00000622776 HRES1P13985 223 aa11.82□□□□□ -0.52
CPSF1-214ENST00000622776 IGKV4-1P06312 121 aa11.81□□□□□ -0.52
CPSF1-214ENST00000622776 KRTAP10-10P60014 251 aa11.81□□□□□ -0.52
CPSF1-214ENST00000622776 A0A1B0GX51 115 aa11.8□□□□□ -0.52
CPSF1-214ENST00000622776 NOTCH2NLQ7Z3S9 236 aa11.78□□□□□ -0.52
CPSF1-214ENST00000622776 S100A6P06703 90 aa11.75□□□□□ -0.53
CPSF1-214ENST00000622776 C14orf144Q96I85 54 aa11.75□□□□□ -0.53
CPSF1-214ENST00000622776 HIGD1BQ9P298 99 aa11.75□□□□□ -0.53
CPSF1-214ENST00000622776 TRBV7-4A0A0J9YYF1 115 aa11.73□□□□□ -0.53
CPSF1-214ENST00000622776 S100A1P23297 94 aa11.73□□□□□ -0.53
CPSF1-214ENST00000622776 ANKRD29Q8N6D5 301 aa11.73□□□□□ -0.53
CPSF1-214ENST00000622776 DEFB116Q30KQ4 102 aa11.71□□□□□ -0.53
CPSF1-214ENST00000622776 PRO1854Q9UHT4 67 aa11.7□□□□□ -0.54
CPSF1-214ENST00000622776 LINC00472Q9H8W2 130 aa11.69□□□□□ -0.54
CPSF1-214ENST00000622776 MACF1Q9UPN3 7388 aaKnown RBP11.69□□□□□ -0.54
CPSF1-214ENST00000622776 C2orf91Q6ZV80 131 aa11.68□□□□□ -0.54
CPSF1-214ENST00000622776 IGHV6-1A0A0B4J1U7 121 aa11.67□□□□□ -0.54
CPSF1-214ENST00000622776 A0A1B0GV72 72 aa11.67□□□□□ -0.54
CPSF1-214ENST00000622776 TRIAP1O43715 76 aa11.66□□□□□ -0.54
CPSF1-214ENST00000622776 CEND1Q8N111 149 aa11.66□□□□□ -0.54
CPSF1-214ENST00000622776 PAM16Q9Y3D7 125 aa11.64□□□□□ -0.55
CPSF1-214ENST00000622776 SPATA45Q537H7 98 aa11.63□□□□□ -0.55
CPSF1-214ENST00000622776 ORMDL1Q9P0S3 153 aa11.63□□□□□ -0.55
CPSF1-214ENST00000622776 TMEM238LA0A1B0GVL6 79 aa11.62□□□□□ -0.55
CPSF1-214ENST00000622776 A6NJY4 79 aa11.62□□□□□ -0.55
CPSF1-214ENST00000622776 DNAL4O96015 105 aa11.62□□□□□ -0.55
CPSF1-214ENST00000622776 H3BQ85 93 aa11.61□□□□□ -0.55
CPSF1-214ENST00000622776 TRACP01848 142 aa11.61□□□□□ -0.55
CPSF1-214ENST00000622776 CCKP06307 115 aa11.61□□□□□ -0.55
CPSF1-214ENST00000622776 MTURNQ8N3F0 131 aa11.61□□□□□ -0.55
CPSF1-214ENST00000622776 SYNE2Q8WXH0 6885 aaKnown RBP11.6□□□□□ -0.55
CPSF1-214ENST00000622776 FXYD2P54710 66 aa11.59□□□□□ -0.55
CPSF1-214ENST00000622776 C8orf87E5RJ46 101 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms