RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FAM218AQ96MZ4 157 aa11.65□□□□□ -0.54
UPF3A-211ENST00000618700 PSMB2P49721 201 aa11.64□□□□□ -0.55
UPF3A-211ENST00000618700 HERC1Q15751 4861 aa11.64□□□□□ -0.55
UPF3A-211ENST00000618700 IGLV5-48A0A075B6I7 105 aa11.63□□□□□ -0.55
UPF3A-211ENST00000618700 LINC01547P58512 204 aaPredicted RBP11.63□□□□□ -0.55
UPF3A-211ENST00000618700 Q6ZQY7 126 aa11.61□□□□□ -0.55
UPF3A-211ENST00000618700 A0A1B0GX51 115 aa11.6□□□□□ -0.55
UPF3A-211ENST00000618700 COX6CP09669 75 aa11.6□□□□□ -0.55
UPF3A-211ENST00000618700 C3orf22Q8N5N4 141 aa11.6□□□□□ -0.55
UPF3A-211ENST00000618700 TEX49A0A1B0GTD5 131 aa11.59□□□□□ -0.55
UPF3A-211ENST00000618700 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-211ENST00000618700 CLEC2BQ92478 149 aa11.59□□□□□ -0.55
UPF3A-211ENST00000618700 SNHG12Q9BXW3 62 aa11.59□□□□□ -0.55
UPF3A-211ENST00000618700 DEFB105AQ8NG35 78 aa11.58□□□□□ -0.56
UPF3A-211ENST00000618700 TYMSOSQ8TAI1 123 aa11.58□□□□□ -0.56
UPF3A-211ENST00000618700 PCP4L1A6NKN8 68 aa11.56□□□□□ -0.56
UPF3A-211ENST00000618700 KRTAP19-4Q3LI73 84 aa11.56□□□□□ -0.56
UPF3A-211ENST00000618700 Q8N377 158 aa11.56□□□□□ -0.56
UPF3A-211ENST00000618700 NAA38Q9BRA0 125 aaKnown RBP11.56□□□□□ -0.56
UPF3A-211ENST00000618700 SNCGO76070 127 aa11.55□□□□□ -0.56
UPF3A-211ENST00000618700 SMIM29Q86T20 159 aa11.55□□□□□ -0.56
UPF3A-211ENST00000618700 IGLV9-49A0A0B4J1Y8 123 aa11.53□□□□□ -0.56
UPF3A-211ENST00000618700 TAX1BP3O14907 124 aa11.53□□□□□ -0.56
UPF3A-211ENST00000618700 SCGB1C2P0DMR2 95 aa11.53□□□□□ -0.56
UPF3A-211ENST00000618700 MOBPQ13875 183 aa11.52□□□□□ -0.57
UPF3A-211ENST00000618700 PPDPFLQ8WWR9 84 aa11.52□□□□□ -0.57
UPF3A-211ENST00000618700 LAMTOR3Q9UHA4 124 aa11.52□□□□□ -0.57
UPF3A-211ENST00000618700 LST1O00453 97 aa11.51□□□□□ -0.57
UPF3A-211ENST00000618700 OCIAD2Q56VL3 154 aa11.51□□□□□ -0.57
UPF3A-211ENST00000618700 C9orf118A6NHY6 69 aa11.49□□□□□ -0.57
UPF3A-211ENST00000618700 H3BUT2 72 aa11.49□□□□□ -0.57
UPF3A-211ENST00000618700 Q8NBF4 154 aa11.49□□□□□ -0.57
UPF3A-211ENST00000618700 TRACP01848 142 aa11.48□□□□□ -0.57
UPF3A-211ENST00000618700 C9orf153Q5TBE3 101 aa11.48□□□□□ -0.57
UPF3A-211ENST00000618700 SSBP3-AS1Q7Z2R9 100 aa11.48□□□□□ -0.57
UPF3A-211ENST00000618700 DNAL4O96015 105 aa11.47□□□□□ -0.57
UPF3A-211ENST00000618700 COL5A1-AS1Q5SY13 56 aa11.47□□□□□ -0.57
UPF3A-211ENST00000618700 LYRM7Q5U5X0 104 aa11.46□□□□□ -0.57
UPF3A-211ENST00000618700 LINC00304Q8N9R0 145 aa11.46□□□□□ -0.57
UPF3A-211ENST00000618700 TCL1BO95988 128 aa11.45□□□□□ -0.58
UPF3A-211ENST00000618700 A0A1W2PPM0 123 aa11.43□□□□□ -0.58
UPF3A-211ENST00000618700 ATXN8Q156A1 80 aa11.43□□□□□ -0.58
UPF3A-211ENST00000618700 ORMDL1Q9P0S3 153 aa11.43□□□□□ -0.58
UPF3A-211ENST00000618700 IGLV8-61A0A075B6I0 122 aa11.4□□□□□ -0.58
UPF3A-211ENST00000618700 TRBV20-1A0A075B6N2 111 aa11.4□□□□□ -0.58
UPF3A-211ENST00000618700 F8WEM9 126 aa11.4□□□□□ -0.58
UPF3A-211ENST00000618700 H3BQ85 93 aa11.4□□□□□ -0.58
UPF3A-211ENST00000618700 SPAG11AQ6PDA7 123 aa11.39□□□□□ -0.59
UPF3A-211ENST00000618700 FABP2P12104 132 aa11.38□□□□□ -0.59
UPF3A-211ENST00000618700 CDIP1Q9H305 208 aa11.38□□□□□ -0.59
UPF3A-211ENST00000618700 KRTAP4-8A0A0G2JLE6 195 aa11.37□□□□□ -0.59
UPF3A-211ENST00000618700 NDUFV3P56181 108 aaKnown RBP11.37□□□□□ -0.59
UPF3A-211ENST00000618700 TMEM256-PLSCR3K7ERE1 68 aa11.36□□□□□ -0.59
UPF3A-211ENST00000618700 SPINK1P00995 79 aa11.34□□□□□ -0.59
UPF3A-211ENST00000618700 UBE2V1Q13404 147 aa11.33□□□□□ -0.6
UPF3A-211ENST00000618700 LCE4AQ5TA78 99 aa11.33□□□□□ -0.6
UPF3A-211ENST00000618700 Q6JHZ5 121 aa11.33□□□□□ -0.6
UPF3A-211ENST00000618700 UBR4Q5T4S7 5183 aa11.32□□□□□ -0.6
UPF3A-211ENST00000618700 A0A0G2JQZ4 141 aa11.32□□□□□ -0.6
UPF3A-211ENST00000618700 HMCN2Q8NDA2 5059 aa11.31□□□□□ -0.6
UPF3A-211ENST00000618700 BAALC-AS2P0C853 105 aa11.31□□□□□ -0.6
UPF3A-211ENST00000618700 RPS29P62273 56 aaKnown RBP11.31□□□□□ -0.6
UPF3A-211ENST00000618700 IGFL1Q6UW32 110 aa11.31□□□□□ -0.6
UPF3A-211ENST00000618700 CD164Q04900 197 aa11.3□□□□□ -0.6
UPF3A-211ENST00000618700 SPCS1Q9Y6A9 102 aa11.3□□□□□ -0.6
UPF3A-211ENST00000618700 H3BMG7 143 aa11.29□□□□□ -0.6
UPF3A-211ENST00000618700 C9JAW5 83 aa11.28□□□□□ -0.6
UPF3A-211ENST00000618700 HRCT1Q6UXD1 115 aa11.26□□□□□ -0.61
UPF3A-211ENST00000618700 ANKRD29Q8N6D5 301 aa11.26□□□□□ -0.61
UPF3A-211ENST00000618700 K7EP34 96 aa11.23□□□□□ -0.61
UPF3A-211ENST00000618700 A0A1B0GV72 72 aa11.22□□□□□ -0.61
UPF3A-211ENST00000618700 H3BT86 120 aa11.22□□□□□ -0.61
UPF3A-211ENST00000618700 Q5XG85 94 aa11.2□□□□□ -0.62
UPF3A-211ENST00000618700 Q6Q795 121 aa11.2□□□□□ -0.62
UPF3A-211ENST00000618700 LIMD2Q9BT23 127 aa11.2□□□□□ -0.62
UPF3A-211ENST00000618700 MTURNQ8N3F0 131 aa11.19□□□□□ -0.62
UPF3A-211ENST00000618700 RETNLBQ9BQ08 111 aa11.19□□□□□ -0.62
UPF3A-211ENST00000618700 TRBV7-4A0A0J9YYF1 115 aa11.18□□□□□ -0.62
UPF3A-211ENST00000618700 TRBV7-7A0A0K0K1E9 115 aa11.18□□□□□ -0.62
UPF3A-211ENST00000618700 KRTAP9-7A8MTY7 169 aa11.18□□□□□ -0.62
UPF3A-211ENST00000618700 LCE1DQ5T752 114 aa11.18□□□□□ -0.62
UPF3A-211ENST00000618700 RBM3P98179 157 aaKnown RBP11.17□□□□□ -0.62
UPF3A-211ENST00000618700 A0A1W2PNM2 257 aa11.16□□□□□ -0.62
UPF3A-211ENST00000618700 TEN1Q86WV5 123 aa11.16□□□□□ -0.62
UPF3A-211ENST00000618700 JMJD7-PLA2G4BH0Y9G9 81 aa11.15□□□□□ -0.62
UPF3A-211ENST00000618700 OBSCN-AS1Q96MR7 158 aa11.15□□□□□ -0.62
UPF3A-211ENST00000618700 GTF2H5Q6ZYL4 71 aa11.14□□□□□ -0.63
UPF3A-211ENST00000618700 PRO0461Q9UI25 63 aa11.14□□□□□ -0.63
UPF3A-211ENST00000618700 PRR4Q16378 134 aa11.13□□□□□ -0.63
UPF3A-211ENST00000618700 DSCR8Q96T75 97 aa11.13□□□□□ -0.63
UPF3A-211ENST00000618700 FP248Q71RG6 208 aaPredicted RBP11.11□□□□□ -0.63
UPF3A-211ENST00000618700 LOC110117498A0A087WWA1 95 aa11.09□□□□□ -0.63
UPF3A-211ENST00000618700 CCKP06307 115 aa11.09□□□□□ -0.63
UPF3A-211ENST00000618700 ASB16-AS1Q495Z4 193 aa11.09□□□□□ -0.63
UPF3A-211ENST00000618700 A0A087WSZ3 146 aa11.07□□□□□ -0.64
UPF3A-211ENST00000618700 Q6ZQT0 140 aa11.07□□□□□ -0.64
UPF3A-211ENST00000618700 C14orf132Q9NPU4 83 aa11.07□□□□□ -0.64
UPF3A-211ENST00000618700 C1orf195Q5TG92 126 aa11.06□□□□□ -0.64
UPF3A-211ENST00000618700 IGLV7-46A0A075B6I9 117 aa11.05□□□□□ -0.64
UPF3A-211ENST00000618700 PDE6GP18545 87 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms